SRR1547985_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547985_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2312863
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5503	0.2379302189537383	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3046	0.13169824585373194	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	2911	0.1258613242548305	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2447	0.10579960853712476	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	25	3.8920363E-5	45.0	9
TATACGG	135	0.0	43.333332	2
CGACGGT	300	0.0	41.25	28
ACGCTAG	90	0.0	40.0	1
TTACGAG	90	0.0	40.0	1
CGTAAGG	340	0.0	39.705883	2
TCACGAC	335	0.0	38.955223	25
TAAGGGA	2905	0.0	38.88124	4
ACGGGAT	790	0.0	38.734177	5
CCACGTA	35	6.2510335E-6	38.571426	33
TAGGGAT	3060	0.0	38.308826	5
CACGACG	335	0.0	38.283585	26
TACGGGA	765	0.0	37.941177	4
TAGTAAG	350	0.0	37.92857	1
TAGGGAC	2080	0.0	37.86058	5
TTAGGGA	2760	0.0	37.744568	4
TGTTACG	60	1.5643309E-10	37.500004	1
ACGCTAA	30	1.1402791E-4	37.500004	7
ATTGGGA	2365	0.0	37.29387	4
GCGTAAG	175	0.0	37.285713	1