SRR1547984_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547984_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1352087
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3322	0.2456942489647486	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2373	0.17550645779450583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTATT	25	3.8911712E-5	45.000004	29
GTATACG	50	2.1827873E-11	45.000004	1
TATAACG	25	3.8911712E-5	45.000004	28
ACCGGAT	20	7.033729E-4	45.0	45
CGTATTA	20	7.033729E-4	45.0	38
CACGATA	20	7.033729E-4	45.0	39
TACGGGT	55	1.8189894E-12	45.0	4
CACGGGT	30	2.165787E-6	44.999996	4
TCTAGCG	30	2.165787E-6	44.999996	1
TACGGGA	530	0.0	42.877357	4
CGCATCG	85	0.0	42.35294	21
TCACGAC	210	0.0	41.785717	25
CGGTCTA	205	0.0	41.70732	31
CGTTAGG	130	0.0	41.53846	2
CGACGGT	210	0.0	40.714287	28
ACGGTCT	210	0.0	40.714287	30
CGTAAGG	255	0.0	40.588234	2
TTACGGG	390	0.0	40.384613	3
AGGGCGA	1475	0.0	40.11864	6
ATCGTCC	45	1.9286745E-8	40.000004	15