##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547983_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1903285 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.83508775616894 31.0 31.0 31.0 30.0 33.0 2 31.184020259708873 31.0 31.0 33.0 30.0 34.0 3 31.384690154128258 31.0 31.0 34.0 30.0 34.0 4 35.25282288254255 37.0 35.0 37.0 33.0 37.0 5 35.05381537709802 35.0 35.0 37.0 32.0 37.0 6 35.08054074928348 37.0 35.0 37.0 32.0 37.0 7 35.47668636068692 35.0 35.0 37.0 35.0 37.0 8 35.552576203774 37.0 35.0 37.0 35.0 37.0 9 37.367375879072235 39.0 37.0 39.0 35.0 39.0 10 36.47181215635073 38.0 35.0 39.0 32.0 39.0 11 36.07754435095112 38.0 35.0 39.0 31.0 39.0 12 35.328985937471266 37.0 35.0 39.0 30.0 39.0 13 34.95103255686878 37.0 34.0 39.0 27.0 39.0 14 35.85876366387588 38.0 34.0 40.0 27.0 41.0 15 36.14003315320617 38.0 34.0 40.0 30.0 41.0 16 36.303196315843394 38.0 34.0 40.0 30.0 41.0 17 36.242106148054546 38.0 34.0 40.0 30.0 41.0 18 36.15352824196061 38.0 34.0 40.0 30.0 41.0 19 36.11544356205193 38.0 34.0 40.0 30.0 41.0 20 35.98748794846804 38.0 34.0 40.0 30.0 41.0 21 35.85798868797894 38.0 34.0 40.0 29.0 41.0 22 35.74672579251137 37.0 34.0 40.0 29.0 41.0 23 35.71385945877785 37.0 34.0 40.0 29.0 41.0 24 35.5905789201302 37.0 34.0 40.0 29.0 41.0 25 35.40711401603018 37.0 34.0 40.0 29.0 41.0 26 35.146249248010676 37.0 34.0 40.0 27.0 41.0 27 35.2198593484423 37.0 34.0 40.0 27.0 41.0 28 35.25978873368938 37.0 34.0 40.0 27.0 41.0 29 35.26744024147724 37.0 34.0 40.0 28.0 41.0 30 35.18069653257395 37.0 34.0 40.0 27.0 41.0 31 35.0675232558445 37.0 34.0 40.0 27.0 41.0 32 34.962839511686376 37.0 33.0 40.0 27.0 41.0 33 34.84542724815254 37.0 33.0 40.0 26.0 41.0 34 34.68793743448827 37.0 33.0 40.0 25.0 41.0 35 34.55463002125273 36.0 33.0 40.0 25.0 41.0 36 34.47480172438705 36.0 33.0 40.0 24.0 41.0 37 34.392352170063866 36.0 33.0 40.0 24.0 41.0 38 34.33895291561694 36.0 33.0 40.0 24.0 41.0 39 34.31233682816814 36.0 33.0 40.0 24.0 41.0 40 34.09844400602117 36.0 33.0 40.0 23.0 41.0 41 34.04402335961246 36.0 33.0 40.0 23.0 41.0 42 34.0076667446021 36.0 33.0 40.0 23.0 41.0 43 33.939357479305514 36.0 33.0 40.0 23.0 41.0 44 33.76820234489317 35.0 32.0 40.0 23.0 41.0 45 33.63242656774997 35.0 32.0 40.0 23.0 41.0 46 33.583603086242995 35.0 32.0 40.0 23.0 41.0 47 33.517879876108935 35.0 32.0 39.0 23.0 41.0 48 33.42007949413777 35.0 32.0 39.0 23.0 41.0 49 33.27483955371896 35.0 32.0 39.0 22.0 41.0 50 33.15494736731493 35.0 31.0 39.0 22.0 41.0 51 32.82595459954762 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 12.0 14 30.0 15 116.0 16 282.0 17 699.0 18 1524.0 19 2709.0 20 4684.0 21 7165.0 22 10751.0 23 15084.0 24 20802.0 25 27765.0 26 34421.0 27 41446.0 28 48621.0 29 57117.0 30 67723.0 31 80293.0 32 97893.0 33 123365.0 34 185899.0 35 207256.0 36 154038.0 37 186238.0 38 244615.0 39 282706.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.77791555127057 24.944819089101212 29.19457674494361 12.082688614684612 2 29.952844686949142 26.87810811307818 29.935138457981857 13.233908741990822 3 29.668651830913394 26.528659659483473 29.83142303963936 13.971265469963773 4 26.4770646540061 28.69717357095758 29.16835891629472 15.657402858741598 5 23.530317319791834 33.12893234591772 28.463367283407372 14.877383050883077 6 21.639218509051457 42.82585109429224 25.14804666668418 10.386883729972126 7 91.13285713910423 3.1072067504341176 4.488187528404837 1.2717485820568122 8 91.37512248559727 2.723449194419123 4.1580215259406765 1.7434067940429312 9 86.557767228765 5.316387193720331 5.584660205907156 2.54118537160751 10 45.29043206876532 31.054991764239197 11.932527183264725 11.722048983730762 11 39.98649703013474 23.05860656706694 20.836606183519546 16.118290219278773 12 37.250332976931986 21.35166304573409 24.24938987067097 17.148614106662954 13 25.65175472932325 30.762339849260623 25.642927885208994 17.942977536207135 14 19.772340978886504 34.22487961603228 27.203177663881135 18.799601741200085 15 18.938361832305723 25.267944632569478 38.692418634098416 17.101274901026382 16 22.960618089250953 22.661451122664236 36.463115087861254 17.91481570022356 17 23.588007050967143 22.7039040395947 25.955650362399744 27.75243854703841 18 24.433807863772373 25.259380492149102 30.200101403625833 20.106710240452692 19 27.734206910683373 26.80218674554783 25.275300335998026 20.188306007770777 20 29.90408688136564 26.821206492984494 24.25333042607912 19.021376199570742 21 26.408393908426746 26.62964295940965 28.346831924803695 18.615131207359905 22 25.339820363214127 23.806839227966385 27.15473510273028 23.69860530608921 23 23.65363043369753 27.420118374284463 26.257234202970125 22.669016989047883 24 23.52821569024082 25.191760561345255 31.931056042579016 19.348967705834912 25 22.459379441334324 25.607200182841773 29.681629393390903 22.251790982433004 26 20.833926605842006 30.5947874333061 26.264484824921126 22.306801135930773 27 20.886624966833658 30.41972169170671 28.102359867282097 20.59129347417754 28 19.121308684721416 28.444505158187027 32.18787517371282 20.246310983378738 29 20.64661887210796 26.57368707261393 30.987109129741476 21.792584925536637 30 22.351986171277556 28.155215850490073 29.224945291955752 20.267852686276623 31 27.46272891343125 26.571112576413935 25.989906924081257 19.976251586073552 32 28.403155596770844 26.38816572399825 26.143956370170525 19.06472230906039 33 27.672839327793785 26.540533866446697 25.659215514229345 20.12741129153017 34 22.270548026175796 27.296962882595093 28.26161084651011 22.170878244719 35 22.05786311561327 26.978408383400275 28.823534047712247 22.140194453274205 36 28.005895070890592 26.69132578673189 25.717903519441386 19.584875622936135 37 23.137680378923807 30.278071859968424 27.018076641175654 19.566171119932118 38 23.402328080135135 30.06128877178142 24.535053867392428 22.001329280691014 39 22.610381524574617 28.877178142001853 26.288233238847567 22.224207094575956 40 24.716266875428534 25.511313334576798 26.15141715507662 23.62100263491805 41 20.423951221178122 25.617077841731533 27.44265835121908 26.516312585871272 42 23.00469976908345 26.369829006165656 25.261061795789914 25.364409428960982 43 22.40310831010595 26.559133287973165 26.37839314658603 24.659365255334855 44 21.464730715578593 28.131887762473827 27.468088068786333 22.935293453161247 45 21.42931825764402 30.431123032020952 24.433019752690743 23.706538957644284 46 22.87103612963902 28.85248399477745 26.491881142340745 21.784598733242788 47 22.700961758223283 26.851627580735414 26.997007804926742 23.45040285611456 48 23.322833942368064 25.72420840809443 28.924622429115978 22.028335220421535 49 23.107364372650444 24.485613032204846 29.526844376958785 22.880178218185925 50 21.675891944716636 28.663494957402598 27.279361735105358 22.381251362775412 51 20.787690755719716 29.447455320669263 26.429147500243 23.33570642336802 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 948.0 1 1584.0 2 2220.0 3 5530.5 4 8841.0 5 6983.0 6 5125.0 7 5063.0 8 5001.0 9 5318.0 10 5635.0 11 6104.0 12 6573.0 13 6751.0 14 6929.0 15 6630.5 16 6332.0 17 6152.5 18 5973.0 19 6108.5 20 6244.0 21 6592.5 22 6941.0 23 8457.0 24 9973.0 25 11461.0 26 14498.0 27 16047.0 28 19674.5 29 23302.0 30 27534.5 31 31767.0 32 35453.5 33 39140.0 34 43472.5 35 47805.0 36 51769.0 37 55733.0 38 65744.5 39 75756.0 40 90278.0 41 104800.0 42 120786.5 43 136773.0 44 144064.5 45 151356.0 46 151249.0 47 151142.0 48 150890.0 49 150638.0 50 145720.0 51 140802.0 52 131100.0 53 121398.0 54 113078.0 55 104758.0 56 101521.0 57 98284.0 58 96100.5 59 93917.0 60 87687.0 61 81457.0 62 70649.0 63 59841.0 64 52748.0 65 45655.0 66 38378.0 67 31101.0 68 25419.0 69 19737.0 70 16011.0 71 12285.0 72 10341.5 73 8398.0 74 6692.5 75 4205.5 76 3424.0 77 2496.0 78 1568.0 79 1253.0 80 938.0 81 689.5 82 441.0 83 325.5 84 210.0 85 147.0 86 84.0 87 55.5 88 27.0 89 21.0 90 15.0 91 12.5 92 10.0 93 5.5 94 1.0 95 2.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1903285.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.95838301809225 #Duplication Level Percentage of deduplicated Percentage of total 1 80.43277610345893 16.05308152681291 2 7.137647314464106 2.849117979002643 3 2.260456245943105 1.3534515465651427 4 1.0809020334336374 0.8629222715321316 5 0.6848390677032894 0.683414020948773 6 0.4987115813441557 0.5972086053615078 7 0.3473910865596846 0.48533550538405973 8 0.28030977734628804 0.44756239199947 9 0.23927320961398169 0.42979557270997076 >10 3.842731225147056 20.624824830166975 >50 2.4081205455850685 34.6820459287055 >100 0.7814653706638488 19.866022851684182 >500 0.0037635071158467247 0.4881305522874152 >1k 0.0016129316210771675 0.5770864168392436 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4494 0.23611808005632368 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027636428595822486 0.0 2 0.0 0.0 0.0 0.11338291427715765 0.0 3 0.0 0.0 0.0 0.1708624824973664 0.0 4 0.0 0.0 0.0 0.3396233354437197 0.0 5 0.0 0.0 0.0 0.5923442889530469 0.0 6 0.0 0.0 0.0 0.9070633142172612 0.0 7 0.0 0.0 0.0 1.0527062421024702 0.0 8 0.0 0.0 0.0 1.4130306286236691 0.0 9 0.0 0.0 0.0 1.5181646469131003 0.0 10 0.0 0.0 0.0 1.7450355569449663 0.0 11 0.0 0.0 0.0 2.078248922258096 0.0 12 0.0 0.0 0.0 2.3364866533388327 0.0 13 0.0 0.0 0.0 2.444195167828255 0.0 14 0.0 0.0 0.0 2.4890124180036097 0.0 15 0.0 0.0 0.0 2.555739156248276 0.0 16 0.0 0.0 0.0 2.716461276162004 0.0 17 0.0 0.0 0.0 2.8910541511124186 0.0 18 0.0 0.0 0.0 3.114930239034091 0.0 19 0.0 0.0 0.0 3.2446007823316005 0.0 20 0.0 0.0 0.0 3.3827829253107127 0.0 21 0.0 0.0 0.0 3.561421437146828 0.0 22 0.0 0.0 0.0 3.741215845236 0.0 23 0.0 0.0 0.0 3.945231533900598 0.0 24 0.0 0.0 0.0 4.0936591209409 0.0 25 0.0 0.0 0.0 4.229582012152673 0.0 26 0.0 0.0 0.0 4.3567831407277415 0.0 27 0.0 0.0 0.0 4.490499320910951 0.0 28 0.0 0.0 0.0 4.634881271065552 0.0 29 0.0 0.0 0.0 4.793974628077246 0.0 30 0.0 0.0 0.0 4.999619079643879 0.0 31 0.0 0.0 0.0 5.190394502137095 0.0 32 0.0 0.0 0.0 5.351064081312047 0.0 33 0.0 0.0 0.0 5.524816304442057 0.0 34 0.0 0.0 0.0 5.7133850159067086 0.0 35 0.0 0.0 0.0 5.94346091100387 0.0 36 0.0 0.0 0.0 6.125987437509359 0.0 37 0.0 0.0 0.0 6.31849670438216 0.0 38 0.0 0.0 0.0 6.5370661776875245 0.0 39 0.0 0.0 0.0 6.874062476192478 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 95 0.0 45.000004 1 GGTACGC 20 7.034456E-4 45.0 8 CGTAACA 20 7.034456E-4 45.0 35 CCGGTTA 35 1.2124838E-7 45.0 31 GCGAATA 30 2.1662563E-6 44.999996 1 CGTACGA 30 2.1662563E-6 44.999996 36 TCATACG 30 2.1662563E-6 44.999996 1 GCGTAAT 30 2.1662563E-6 44.999996 32 TCGAACG 85 0.0 42.35294 1 TATCGCG 70 0.0 41.785713 1 CGGTCTA 245 0.0 41.32653 31 TACGTAG 135 0.0 40.000004 1 TACGCGG 90 0.0 40.0 2 CGTAAGG 440 0.0 39.886364 2 AGGGCGA 1805 0.0 39.39058 6 TACGGGA 785 0.0 39.267517 4 GGCGATA 745 0.0 38.959732 8 CTACGGG 480 0.0 38.906246 3 ACGGGAT 855 0.0 38.68421 5 GGGCGAT 3205 0.0 38.681747 7 >>END_MODULE