##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547978_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2645618 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.857216725921884 31.0 31.0 31.0 30.0 33.0 2 31.19950196891615 31.0 31.0 33.0 30.0 34.0 3 31.30449180493934 31.0 31.0 34.0 30.0 34.0 4 35.23012052382468 37.0 35.0 37.0 33.0 37.0 5 35.07489932408987 35.0 35.0 37.0 32.0 37.0 6 35.1196438790483 37.0 35.0 37.0 32.0 37.0 7 35.52833591244087 35.0 35.0 37.0 35.0 37.0 8 35.61886296509927 37.0 35.0 37.0 35.0 37.0 9 37.42643571369714 39.0 37.0 39.0 35.0 39.0 10 36.56121480878948 38.0 35.0 39.0 32.0 39.0 11 36.1391194798342 38.0 35.0 39.0 31.0 39.0 12 35.843771096205124 37.0 35.0 39.0 30.0 39.0 13 35.72798718484679 37.0 35.0 39.0 30.0 39.0 14 36.75763167622839 39.0 35.0 40.0 31.0 41.0 15 36.89673301285371 39.0 35.0 40.0 31.0 41.0 16 36.967965140848 39.0 35.0 41.0 31.0 41.0 17 36.881012300339655 38.0 35.0 40.0 31.0 41.0 18 36.77442472798416 38.0 35.0 40.0 31.0 41.0 19 36.70992562040325 38.0 35.0 40.0 31.0 41.0 20 36.58172192659711 38.0 35.0 40.0 30.0 41.0 21 36.470464745855224 38.0 35.0 40.0 30.0 41.0 22 36.35767144009453 38.0 35.0 40.0 30.0 41.0 23 36.25233159133329 38.0 34.0 40.0 30.0 41.0 24 36.14765812751501 38.0 34.0 40.0 30.0 41.0 25 35.98532101006268 38.0 34.0 40.0 30.0 41.0 26 35.76818119622712 38.0 34.0 40.0 29.0 41.0 27 35.856357191401024 38.0 34.0 40.0 29.0 41.0 28 35.85760453701177 38.0 34.0 40.0 29.0 41.0 29 35.83356289532351 38.0 34.0 40.0 29.0 41.0 30 35.729962148730465 38.0 34.0 40.0 29.0 41.0 31 35.621254466820226 38.0 34.0 40.0 28.0 41.0 32 35.48795555518597 38.0 34.0 40.0 27.0 41.0 33 35.30343042721965 38.0 34.0 40.0 27.0 41.0 34 35.09690552453151 38.0 34.0 40.0 25.0 41.0 35 34.913980778782125 38.0 33.0 40.0 25.0 41.0 36 34.82555002271681 38.0 33.0 40.0 24.0 41.0 37 34.780447517366454 38.0 33.0 40.0 24.0 41.0 38 34.71414769630385 38.0 33.0 40.0 24.0 41.0 39 34.65295216467381 38.0 33.0 40.0 24.0 41.0 40 34.48940927979776 38.0 33.0 40.0 23.0 41.0 41 34.40169253459872 37.0 33.0 40.0 23.0 41.0 42 34.35688447840921 37.0 33.0 40.0 23.0 41.0 43 34.32353763846481 37.0 33.0 40.0 23.0 41.0 44 34.15663637002772 37.0 33.0 40.0 23.0 41.0 45 34.023666682038 37.0 33.0 40.0 23.0 41.0 46 33.94181737499518 37.0 33.0 40.0 23.0 41.0 47 33.883840751007895 37.0 33.0 40.0 22.0 41.0 48 33.77052053622254 36.0 32.0 40.0 22.0 41.0 49 33.62021728004572 36.0 32.0 40.0 21.0 41.0 50 33.5133129575018 36.0 32.0 40.0 21.0 41.0 51 33.1814033620878 36.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 4.0 13 5.0 14 35.0 15 96.0 16 284.0 17 671.0 18 1452.0 19 2903.0 20 5081.0 21 8370.0 22 12397.0 23 18390.0 24 26360.0 25 37197.0 26 48499.0 27 56306.0 28 62695.0 29 72301.0 30 84848.0 31 101243.0 32 121357.0 33 151375.0 34 207962.0 35 238791.0 36 232052.0 37 287642.0 38 392314.0 39 474943.0 40 42.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.45409427967303 25.364357212568102 29.633529859564007 14.548018648194864 2 31.369759353013173 26.440060507601626 28.853069490757928 13.337110648627275 3 28.06973644721196 26.301416153050063 32.062867730715475 13.565979669022513 4 25.238110717420277 28.744890607789937 31.419312992276282 14.5976856825135 5 23.222702597275948 32.46976698828024 30.068664485953754 14.238865928490055 6 22.087277906334172 41.489776679777655 26.162620605091135 10.260324808797037 7 89.82343633888188 2.6497022623825512 6.335948727291695 1.1909126714438742 8 90.69434816364267 1.9220083927460427 5.866039617208531 1.5176038264027536 9 85.47507614477978 4.893866007866593 7.436334346077174 2.1947235012764503 10 39.06285790314399 37.01142795369551 13.109035393620697 10.816678749539806 11 26.906718959426495 25.6668952207008 29.323772366229743 18.102613453642967 12 27.56577102212035 23.1032220071076 30.024440414300173 19.30656655647187 13 23.71563090363008 26.070997400229363 30.75092473667778 19.462446959462778 14 19.11542029121362 29.290850001776526 30.833362942042275 20.760366764967582 15 18.583748674222807 27.690240994731663 35.479725342056184 18.246284988989338 16 23.005740057710526 25.576179176283198 33.72444547927932 17.69363528672696 17 22.28103225786943 25.859742411791874 29.76726042837628 22.091964901962417 18 22.696549539653873 25.957791336466563 31.590161542596096 19.755497581283464 19 24.247982890954024 27.57136517819277 28.64343983144959 19.537212099403618 20 25.81294805221313 27.476680306831902 28.063310727399042 18.647060913555926 21 24.930318738381732 26.646477307003508 30.294471839849894 18.128732114764865 22 24.12581861780499 24.07524442304218 30.418223643776237 21.380713315376596 23 21.4307205348618 27.355649984238088 30.180849994216853 21.03277948668326 24 21.268943588983745 26.533044453129666 32.79381225861028 19.40419969927631 25 21.957062584243076 28.204563168227615 29.43198904754957 20.40638519997974 26 21.156115508739358 30.19101775086199 28.11898769966034 20.533879040738306 27 20.29446428017953 29.172994740737323 30.297155522830582 20.235385456252565 28 19.56008010226722 28.9048154344278 31.903698871114422 19.63140559219056 29 20.82670287244795 26.719919504629917 31.859701589571888 20.593676033350242 30 22.07355710461601 27.035535742499484 31.061249205289656 19.829657947594853 31 23.40995563229461 27.24558118367807 29.419137607923744 19.92532557610358 32 24.04247325199632 27.119485881937607 29.437885590436714 19.40015527562936 33 23.228258954996527 27.42716446592063 29.316250494213453 20.0283260848694 34 21.68551922461973 27.490287713494542 30.46550938192891 20.35868367995682 35 21.195274601246286 27.266521470597798 30.413612244851674 21.124591683304242 36 23.260349755709253 27.825672489376775 28.884744509600402 20.02923324531357 37 21.394093931928193 28.651377485336127 29.269985311560475 20.684543271175205 38 21.649535193667415 28.567616337657213 28.683959664622783 21.09888880405259 39 21.048276810937935 28.451537599154523 28.62370909178876 21.876476498118777 40 23.00264059285959 27.227211184683505 28.605679277960768 21.164468944496146 41 20.171695233401042 27.265387520042577 29.49549027864189 23.067426967914493 42 21.487418062622798 27.812405267880695 28.395331449967454 22.30484521952905 43 21.37916358295113 27.51243754767317 29.22787794760997 21.88052092176573 44 21.40399710011045 28.778720132687337 28.6725445623669 21.144738204835317 45 21.006509632154 28.636295942951705 27.91453641455418 22.442658010340118 46 21.61759558636205 28.82226383400778 28.1539889734648 21.406151606165363 47 21.63517181996796 27.737035354310414 29.142415874098226 21.4853769516234 48 21.314226014488863 27.090721336186856 30.14550853524583 21.44954411407845 49 21.48114353621725 26.82027412876689 29.80165692855129 21.896925406464575 50 20.30043641977035 28.288399912610213 29.98157708331286 21.429586584306577 51 20.309243435749227 28.142876258023648 29.1763209956993 22.371559310527825 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 959.0 1 1575.5 2 2192.0 3 14885.0 4 27578.0 5 20948.0 6 14318.0 7 13403.5 8 12489.0 9 13065.0 10 13641.0 11 13853.5 12 14066.0 13 14148.5 14 14231.0 15 13946.5 16 13662.0 17 13285.5 18 12909.0 19 12828.0 20 12747.0 21 13370.5 22 13994.0 23 15751.5 24 17509.0 25 20161.0 26 27400.0 27 31987.0 28 38034.0 29 44081.0 30 51514.5 31 58948.0 32 68155.5 33 77363.0 34 85568.5 35 93774.0 36 102282.5 37 110791.0 38 120223.5 39 129656.0 40 141222.5 41 152789.0 42 165150.0 43 177511.0 44 183955.0 45 190399.0 46 198298.5 47 206198.0 48 203624.0 49 201050.0 50 193122.0 51 185194.0 52 173938.5 53 162683.0 54 150225.5 55 137768.0 56 128631.0 57 119494.0 58 110732.5 59 101971.0 60 92834.5 61 83698.0 62 74021.0 63 64344.0 64 54771.0 65 45198.0 66 36944.0 67 28690.0 68 23333.0 69 17976.0 70 14961.5 71 11947.0 72 9934.5 73 7922.0 74 6611.0 75 4088.0 76 2876.0 77 2187.5 78 1499.0 79 1143.5 80 788.0 81 557.0 82 326.0 83 230.0 84 134.0 85 116.0 86 98.0 87 63.0 88 28.0 89 22.0 90 16.0 91 12.0 92 8.0 93 6.0 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2645618.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.073567998620202 #Duplication Level Percentage of deduplicated Percentage of total 1 76.55356914812336 17.66363983276298 2 6.696803259798126 3.09038290776667 3 2.5796923720202174 1.7856812208399102 4 1.5286991012052424 1.41090170644355 5 0.9635026711536882 1.111572219985841 6 0.7483766607129883 1.0360631861724874 7 0.6216156036899062 1.0040022930519679 8 0.5126836390899768 0.9463552646658112 9 0.450477813392032 0.9354717413253715 >10 7.750384918538744 45.62183653367043 >50 1.5459237035461237 22.70138087918997 >100 0.045748512862729615 1.5958141738173806 >500 0.0015135575201132396 0.23181225742174527 >1k 8.408652889517998E-4 0.2543959088813127 >5k 0.0 0.0 >10k+ 1.6817305779035996E-4 0.6106898740045911 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15738 0.5948704612684068 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018521192401926505 0.0 2 0.0 0.0 0.0 0.09177439826913787 0.0 3 0.0 0.0 0.0 0.18215025752017108 0.0 4 0.0 0.0 0.0 0.3003457037259347 0.0 5 0.0 0.0 0.0 0.5696589605906824 0.0 6 0.0 0.0 0.0 1.1572721383056812 0.0 7 0.0 0.0 0.0 1.4170224121547403 0.0 8 0.0 0.0 0.0 1.903638393751479 0.0 9 0.0 0.0 0.0 2.1787347984478487 0.0 10 0.0 0.0 0.0 2.531431219473106 0.0 11 0.0 0.0 0.0 2.897924038920207 0.0 12 0.0 0.0 0.0 3.17491036120861 0.0 13 0.0 0.0 0.0 3.3399001669931185 0.0 14 0.0 0.0 0.0 3.4432030625736596 0.0 15 0.0 0.0 0.0 3.5404204235078534 0.0 16 0.0 0.0 0.0 3.6860952715017814 0.0 17 0.0 0.0 0.0 3.852332422897032 0.0 18 0.0 0.0 0.0 4.0443102518957765 0.0 19 0.0 0.0 0.0 4.188170779001353 0.0 20 0.0 0.0 0.0 4.330897355551708 0.0 21 0.0 0.0 0.0 4.497399095409844 0.0 22 0.0 0.0 0.0 4.681136883707323 0.0 23 0.0 0.0 0.0 4.872623334132139 0.0 24 0.0 0.0 0.0 5.029448695919063 0.0 25 0.0 0.0 0.0 5.166127536174913 0.0 26 0.0 0.0 0.0 5.3113488039467525 0.0 27 0.0 0.0 0.0 5.464583322308814 0.0 28 0.0 0.0 0.0 5.617439857152469 0.0 29 0.0 0.0 0.0 5.780766535455988 0.0 30 0.0 0.0 0.0 5.977355763379293 0.0 31 0.0 0.0 0.0 6.160488778047322 0.0 32 0.0 0.0 0.0 6.335910928939854 0.0 33 0.0 0.0 0.0 6.508913985314584 0.0 34 0.0 0.0 0.0 6.6900436873350575 0.0 35 0.0 0.0 0.0 6.880660775667538 0.0 36 0.0 0.0 0.0 7.07025730850032 0.0 37 0.0 0.0 0.0 7.259060075944449 0.0 38 0.0 0.0 0.0 7.4588243654223705 0.0 39 0.0 0.0 0.0 7.7257563261211555 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9725 0.0 41.78406 1 TACGGGA 1180 0.0 40.23305 4 TAGGGAC 3250 0.0 39.25385 5 ACGGGAC 1015 0.0 38.793102 5 GGGCGAT 3865 0.0 37.606728 7 AACGGGA 1240 0.0 37.560482 4 TAGGGAT 4610 0.0 37.434925 5 ACGGGAT 1400 0.0 37.125 5 TTAGGGA 4015 0.0 36.762142 4 GCGTAAG 190 0.0 36.710526 1 CTAGGGA 2435 0.0 36.683777 4 TAAGGGA 4020 0.0 36.548508 4 TTGGGAC 2400 0.0 36.375 5 GTAGGGA 4055 0.0 36.288532 4 ATAGGGA 4160 0.0 36.237984 4 AAGGGAT 4745 0.0 36.227608 5 AGGGATC 3730 0.0 36.193027 6 AGGGCGA 2145 0.0 36.18881 6 AGGGATT 5365 0.0 35.89935 6 TAGGGCG 850 0.0 35.735294 5 >>END_MODULE