##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547977_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2629652 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.88076292984775 31.0 31.0 31.0 30.0 33.0 2 31.23378188444707 31.0 31.0 33.0 30.0 34.0 3 31.42926744679524 31.0 31.0 34.0 30.0 34.0 4 35.318164913075954 37.0 35.0 37.0 33.0 37.0 5 35.15331306195649 37.0 35.0 37.0 32.0 37.0 6 35.1862748378873 37.0 35.0 37.0 32.0 37.0 7 35.497550626470726 35.0 35.0 37.0 35.0 37.0 8 35.558430164903946 37.0 35.0 37.0 35.0 37.0 9 37.371436220458065 39.0 37.0 39.0 35.0 39.0 10 36.531036806391114 38.0 35.0 39.0 32.0 39.0 11 36.18668705973262 38.0 35.0 39.0 31.0 39.0 12 35.745845457878076 37.0 35.0 39.0 30.0 39.0 13 35.56931563568107 37.0 35.0 39.0 30.0 39.0 14 36.56383810481387 38.0 35.0 40.0 30.0 41.0 15 36.723051567279626 38.0 35.0 40.0 31.0 41.0 16 36.815714398711314 38.0 35.0 40.0 31.0 41.0 17 36.739638552934004 38.0 35.0 40.0 31.0 41.0 18 36.6617613281149 38.0 35.0 40.0 31.0 41.0 19 36.61753266211651 38.0 35.0 40.0 30.0 41.0 20 36.50661722539712 38.0 35.0 40.0 30.0 41.0 21 36.395351552220596 38.0 35.0 40.0 30.0 41.0 22 36.27844749039036 38.0 34.0 40.0 30.0 41.0 23 36.165708618478796 38.0 34.0 40.0 30.0 41.0 24 36.05944208587296 38.0 34.0 40.0 30.0 41.0 25 35.88173910464198 38.0 34.0 40.0 29.0 41.0 26 35.65377129749488 38.0 34.0 40.0 29.0 41.0 27 35.75244823269391 38.0 34.0 40.0 29.0 41.0 28 35.76583821737629 38.0 34.0 40.0 29.0 41.0 29 35.74059989686848 38.0 34.0 40.0 29.0 41.0 30 35.64867708731041 38.0 34.0 40.0 29.0 41.0 31 35.57761102990053 38.0 34.0 40.0 28.0 41.0 32 35.465742995651134 38.0 34.0 40.0 27.0 41.0 33 35.34025376741865 38.0 34.0 40.0 27.0 41.0 34 35.169113631765725 38.0 34.0 40.0 26.0 41.0 35 35.038412687306156 38.0 34.0 40.0 25.0 41.0 36 34.97459017390894 38.0 33.0 40.0 25.0 41.0 37 34.93141031588971 38.0 33.0 40.0 25.0 41.0 38 34.84382876517501 37.0 33.0 40.0 25.0 41.0 39 34.79157166043264 37.0 33.0 40.0 25.0 41.0 40 34.6069095834734 37.0 33.0 40.0 24.0 41.0 41 34.52257827271441 37.0 33.0 40.0 24.0 41.0 42 34.48664880372004 37.0 33.0 40.0 24.0 41.0 43 34.42383554934265 37.0 33.0 40.0 24.0 41.0 44 34.26829443591776 37.0 33.0 40.0 23.0 41.0 45 34.13337924561881 36.0 33.0 40.0 23.0 41.0 46 34.056381604866345 36.0 33.0 40.0 23.0 41.0 47 34.001815449344626 36.0 33.0 40.0 23.0 41.0 48 33.90607312298357 36.0 33.0 40.0 23.0 41.0 49 33.7517800834483 36.0 32.0 40.0 23.0 41.0 50 33.65387093045011 36.0 32.0 40.0 23.0 41.0 51 33.305214910566114 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 3.0 13 13.0 14 41.0 15 138.0 16 364.0 17 783.0 18 1645.0 19 3077.0 20 5133.0 21 8191.0 22 12091.0 23 17470.0 24 24399.0 25 33242.0 26 43202.0 27 51313.0 28 59684.0 29 70314.0 30 84641.0 31 102403.0 32 125121.0 33 156747.0 34 223252.0 35 246483.0 36 236599.0 37 290129.0 38 386986.0 39 446124.0 40 60.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.144061647700916 24.943148370963154 27.712868470809067 13.199921510526869 2 30.83639964527626 26.046336169196532 28.931851058619163 14.185413126908047 3 29.713171172459322 26.26035688372454 29.69468963954166 14.331782304274482 4 26.57093029800141 28.894735881401797 28.968243706771844 15.566090113824949 5 23.703440607350327 33.05619907120791 28.015798288138505 15.224562033303265 6 22.773051339112552 42.459116263292636 24.872530661851837 9.89530173574298 7 90.8738494675341 2.9591367983292085 4.793181759411511 1.3738319747251728 8 90.98664005731557 2.577565396485923 4.800330994367315 1.6354635518311929 9 85.68498797559525 5.387556984726497 6.262919960511885 2.664535079166369 10 40.30533317716565 35.127461732579064 12.839721757859976 11.727483332395314 11 32.922150915786574 25.346775923202003 24.528873021981614 17.202200139029802 12 31.04954571935754 22.82769735310984 27.587985026155554 18.534771901377063 13 25.595934366980877 26.33880832901083 28.7722862188609 19.29297108514739 14 21.472384939147844 28.791452252997736 29.37076845149092 20.365394356363502 15 20.883067417285634 26.035764428144866 33.953998475843946 19.12716967872555 16 24.867054652098453 24.700987050758048 31.406170854546534 19.025787442596968 17 24.340749270245645 24.790504599087637 27.611638346062524 23.257107784604198 18 24.94543004169373 25.39111639106619 29.48557451708439 20.177879050155685 19 26.920862532380713 26.747645696084497 26.119349632574956 20.212142138959834 20 28.85050949707414 26.63774522256177 25.81486067357962 18.696884606784472 21 27.045631893497696 26.199550358754692 27.660656238924393 19.09416150882322 22 26.395241651747074 23.617269509425583 27.755649797007358 22.23183904181998 23 23.769114696545397 26.744565440598222 27.63894233913841 21.847377523717967 24 23.501246552775804 25.973626928582185 30.182168591129166 20.342957927512842 25 23.548286997671177 27.01798564981222 28.008534969646178 21.425192382870435 26 22.633489146092334 28.92371309968011 26.555110714269414 21.88768703995814 27 21.732001040441855 28.392388042220034 28.0399459700371 21.835664947301012 28 20.763926177304068 27.879278322759056 29.857676985395788 21.499118514541088 29 21.890767295444416 26.24571616320334 29.871975455307393 21.991541086044847 30 22.88443489861016 26.57260352320383 29.357344622026034 21.18561695615998 31 25.246040160447087 26.90017538442349 26.386457219434355 21.467327235695066 32 25.59833012124798 26.394405039145862 26.811418393004093 21.195846446602058 33 25.227748766756967 26.782060896270686 26.19985458151877 21.790335755453576 34 22.46677507137827 27.40735275998497 28.125052288287577 22.000819880349187 35 22.255036027580836 27.645483128566063 28.177720854318366 21.921759989534735 36 24.541194043926726 28.216775451656723 25.86022789327257 21.381802611143986 37 22.82803960371943 29.444618527470556 26.23944156869426 21.487900300115754 38 22.964559569098878 29.052589468112128 25.778848303882036 22.20400265890696 39 22.53975050691118 28.008078635500063 26.136576246590803 23.31559461099796 40 24.20103496584339 26.60660041708941 26.892303620403002 22.300060996664197 41 21.120056950501436 26.68596453066794 27.516492676597508 24.677485842233114 42 22.526212593909765 26.98801970755066 26.352118074939195 24.133649623600384 43 22.302228583858245 26.535146095376877 27.566423237751614 23.596202083013264 44 22.43646687850712 26.799781872278157 27.528775670697108 23.234975578517613 45 21.903240428771564 27.96655222820358 26.288231294483072 23.841976048541785 46 22.24720229140586 28.04610648100965 27.03928124329759 22.667409984286895 47 21.975683474467345 27.501167454857146 28.065728849292604 22.457420221382907 48 22.140306017678384 26.722623373739186 28.73539920871659 22.401671399865837 49 22.68942810683695 26.152928220159932 28.218296565477104 22.939347107526014 50 21.553232138701244 27.819498549617972 27.961190301986726 22.66607900969406 51 21.447552756030074 27.749451258189296 27.43587364411717 23.36712234166346 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 936.0 1 1764.5 2 2593.0 3 9346.5 4 16100.0 5 12538.5 6 8977.0 7 8264.0 8 7551.0 9 8040.0 10 8529.0 11 8847.0 12 9165.0 13 9149.0 14 9133.0 15 9117.5 16 9102.0 17 9087.5 18 9073.0 19 9323.5 20 9574.0 21 10556.0 22 11538.0 23 12773.0 24 14008.0 25 16460.0 26 22106.5 27 25301.0 28 31493.5 29 37686.0 30 44666.0 31 51646.0 32 59215.5 33 66785.0 34 75324.5 35 83864.0 36 89194.0 37 94524.0 38 103019.0 39 111514.0 40 123991.0 41 136468.0 42 148782.5 43 161097.0 44 166003.0 45 170909.0 46 177278.5 47 183648.0 48 187225.5 49 190803.0 50 185879.0 51 180955.0 52 173548.0 53 166141.0 54 157876.0 55 149611.0 56 144224.5 57 138838.0 58 131511.5 59 124185.0 60 117653.0 61 111121.0 62 102157.5 63 93194.0 64 82196.5 65 71199.0 66 60935.5 67 50672.0 68 41970.0 69 33268.0 70 28586.5 71 23905.0 72 19376.0 73 14847.0 74 12508.0 75 8138.0 76 6107.0 77 4535.5 78 2964.0 79 2285.0 80 1606.0 81 1230.5 82 855.0 83 568.0 84 281.0 85 214.5 86 148.0 87 113.0 88 78.0 89 54.5 90 31.0 91 29.0 92 27.0 93 19.0 94 11.0 95 6.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2629652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.561012145287137 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9897903555687 15.829880145639585 2 6.45832729535116 2.6557949191590926 3 2.195350740819406 1.354158997354588 4 1.2564366173047248 1.0333443419274375 5 0.8610951574485843 0.885249399527414 6 0.6837875523371196 0.8435618501039809 7 0.5624224188566191 0.8094781929424903 8 0.4988611752486102 0.8205672546479112 9 0.42276657538236234 0.7823257821952383 >10 7.774512114558238 41.782558038069325 >50 2.193593720589685 29.55246260292685 >100 0.10058908480503631 2.904995519445156 >500 0.0018978397921378127 0.2791208396851246 >1k 3.7956795842756255E-4 0.14110176936969251 >5k 1.8978397921378128E-4 0.325400347006047 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8339 0.3171142037045206 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02448993250817979 0.0 2 0.0 0.0 0.0 0.08263450829235199 0.0 3 0.0 0.0 0.0 0.1332115428201146 0.0 4 0.0 0.0 0.0 0.22166431147543478 0.0 5 0.0 0.0 0.0 0.42313583698527407 0.0 6 0.0 0.0 0.0 0.7408584862179483 0.0 7 0.0 0.0 0.0 0.9046824446732876 0.0 8 0.0 0.0 0.0 1.2563639599460308 0.0 9 0.0 0.0 0.0 1.4366920033525348 0.0 10 0.0 0.0 0.0 1.7107967137857025 0.0 11 0.0 0.0 0.0 1.9905295453542902 0.0 12 0.0 0.0 0.0 2.196944690780377 0.0 13 0.0 0.0 0.0 2.3073395262947343 0.0 14 0.0 0.0 0.0 2.3742685343916228 0.0 15 0.0 0.0 0.0 2.4434792132190877 0.0 16 0.0 0.0 0.0 2.561897924135969 0.0 17 0.0 0.0 0.0 2.6958319960207664 0.0 18 0.0 0.0 0.0 2.850339132326255 0.0 19 0.0 0.0 0.0 2.9490594192691657 0.0 20 0.0 0.0 0.0 3.052076852754661 0.0 21 0.0 0.0 0.0 3.184794033583151 0.0 22 0.0 0.0 0.0 3.331163210949586 0.0 23 0.0 0.0 0.0 3.487837934449121 0.0 24 0.0 0.0 0.0 3.6209353937327067 0.0 25 0.0 0.0 0.0 3.7401146615597805 0.0 26 0.0 0.0 0.0 3.853779891787963 0.0 27 0.0 0.0 0.0 3.98486187525954 0.0 28 0.0 0.0 0.0 4.109935459140601 0.0 29 0.0 1.1408353652878784E-4 0.0 4.24645542452005 0.0 30 0.0 1.1408353652878784E-4 0.0 4.413511749843706 0.0 31 0.0 1.1408353652878784E-4 0.0 4.557028838796921 0.0 32 3.8027845509595945E-5 1.1408353652878784E-4 0.0 4.70301773770826 0.0 33 3.8027845509595945E-5 1.1408353652878784E-4 0.0 4.845736241905773 0.0 34 3.8027845509595945E-5 1.1408353652878784E-4 0.0 4.998608180854349 0.0 35 3.8027845509595945E-5 1.1408353652878784E-4 0.0 5.16414339235762 0.0 36 3.8027845509595945E-5 1.1408353652878784E-4 0.0 5.316977303460686 0.0 37 3.8027845509595945E-5 1.1408353652878784E-4 0.0 5.483767433865774 0.0 38 3.8027845509595945E-5 1.1408353652878784E-4 0.0 5.669571487025659 0.0 39 3.8027845509595945E-5 1.1408353652878784E-4 0.0 5.932990372870631 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGCGAT 4650 0.0 39.09677 7 CGTAAGG 455 0.0 39.065933 2 ACGGGAT 1305 0.0 38.965515 5 ATAACGG 210 0.0 38.57143 2 TACGGGA 960 0.0 38.437496 4 CGTTTTT 5810 0.0 38.106712 1 TCGATAG 155 0.0 37.741936 1 CGTTAGG 295 0.0 37.372883 2 AGGGCGA 2645 0.0 37.344044 6 TAGGGAT 4190 0.0 37.321 5 TAAGGGA 3670 0.0 36.968662 4 GGCGATT 1235 0.0 36.80162 8 AGGGATT 4415 0.0 36.693092 6 ACGTAAG 135 0.0 36.666664 1 CGAATAT 345 0.0 36.52174 14 CACGACC 745 0.0 36.24161 27 ATAGGGA 4140 0.0 36.195652 4 TTAGGGA 3535 0.0 36.025463 4 AGGGATC 2530 0.0 36.017784 6 GACCGAT 1450 0.0 36.0 9 >>END_MODULE