##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547971_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2738194 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.820745717797937 31.0 31.0 31.0 30.0 33.0 2 31.144229006418097 31.0 31.0 33.0 30.0 34.0 3 31.217282267070924 31.0 31.0 34.0 28.0 34.0 4 35.15137422695397 35.0 35.0 37.0 32.0 37.0 5 35.01363416909101 35.0 35.0 37.0 32.0 37.0 6 35.063366949164305 37.0 35.0 37.0 32.0 37.0 7 35.513309137336506 35.0 35.0 37.0 35.0 37.0 8 35.615440688278476 37.0 35.0 37.0 35.0 37.0 9 37.42085476777759 39.0 37.0 39.0 35.0 39.0 10 36.53874816758783 38.0 35.0 39.0 32.0 39.0 11 36.074546215498245 38.0 35.0 39.0 31.0 39.0 12 35.82642537380478 37.0 35.0 39.0 30.0 39.0 13 35.72380810125214 37.0 35.0 39.0 30.0 39.0 14 36.75383701812216 39.0 35.0 40.0 31.0 41.0 15 36.89886910861685 39.0 35.0 40.0 31.0 41.0 16 36.970624068272734 39.0 35.0 41.0 31.0 41.0 17 36.899732086185274 38.0 35.0 40.0 31.0 41.0 18 36.777158229110135 38.0 35.0 40.0 31.0 41.0 19 36.71597008831368 38.0 35.0 40.0 31.0 41.0 20 36.56343341633208 38.0 35.0 40.0 30.0 41.0 21 36.463910884327404 38.0 35.0 40.0 30.0 41.0 22 36.341167207290646 38.0 35.0 40.0 30.0 41.0 23 36.25028175505461 38.0 34.0 40.0 30.0 41.0 24 36.148784929044474 38.0 34.0 40.0 30.0 41.0 25 35.99122049058613 38.0 34.0 40.0 29.0 41.0 26 35.76284331935575 38.0 34.0 40.0 29.0 41.0 27 35.826826002832526 38.0 34.0 40.0 29.0 41.0 28 35.82903512315051 38.0 34.0 40.0 29.0 41.0 29 35.80872830778243 38.0 34.0 40.0 29.0 41.0 30 35.72646130989988 38.0 34.0 40.0 29.0 41.0 31 35.63572011333017 38.0 34.0 40.0 28.0 41.0 32 35.490143503345635 38.0 34.0 40.0 27.0 41.0 33 35.304464548530895 38.0 34.0 40.0 27.0 41.0 34 35.10081535493833 38.0 34.0 40.0 25.0 41.0 35 34.929181423960465 38.0 34.0 40.0 25.0 41.0 36 34.84589331508286 38.0 33.0 40.0 24.0 41.0 37 34.79573032444012 38.0 33.0 40.0 24.0 41.0 38 34.722415942771036 38.0 33.0 40.0 24.0 41.0 39 34.672549132749545 38.0 33.0 40.0 24.0 41.0 40 34.52751740745908 38.0 33.0 40.0 23.0 41.0 41 34.441271144411246 38.0 33.0 40.0 23.0 41.0 42 34.41865623838194 37.0 33.0 40.0 23.0 41.0 43 34.38154929855226 37.0 33.0 40.0 23.0 41.0 44 34.24291741198761 37.0 33.0 40.0 23.0 41.0 45 34.1230555614394 37.0 33.0 40.0 23.0 41.0 46 34.05851448071247 37.0 33.0 40.0 23.0 41.0 47 34.01995366288875 37.0 33.0 40.0 23.0 41.0 48 33.92594425376726 37.0 33.0 40.0 23.0 41.0 49 33.78287513594727 37.0 32.0 40.0 22.0 41.0 50 33.67523338375586 36.0 32.0 40.0 22.0 41.0 51 33.353193382207394 36.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 4.0 13 7.0 14 35.0 15 107.0 16 315.0 17 744.0 18 1571.0 19 2968.0 20 5233.0 21 8201.0 22 12512.0 23 18296.0 24 27400.0 25 39100.0 26 51569.0 27 58813.0 28 65668.0 29 74327.0 30 87059.0 31 104027.0 32 125778.0 33 154262.0 34 211315.0 35 245434.0 36 241490.0 37 295172.0 38 405087.0 39 501651.0 40 47.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.41263913367716 24.899148855048253 28.89696639463822 14.791245616636367 2 31.918702619317695 25.946444992575397 28.818337926385055 13.316514461721852 3 28.226232326854856 25.793716588379056 32.573002497266444 13.407048587499643 4 24.493991294992245 28.960329326556117 31.786279569672566 14.759399808779072 5 21.99727265489589 32.531807461414346 31.12160789191708 14.349311991772678 6 21.16022458598624 40.78918440402689 27.882173432561753 10.16841757742512 7 89.55121514399637 2.423129990059141 6.854992743392177 1.1706621225523102 8 90.01498798112917 1.9751704955894285 6.518603137688564 1.4912383855928397 9 85.10700848807645 5.059721845858986 7.875263768746846 1.958005897317721 10 38.208578354930296 40.78407154496723 12.384257653037002 8.623092447065476 11 24.871941140766506 26.709174003010745 31.24778594942506 17.171098906797692 12 26.416280219736077 24.350502557525143 30.796904821206972 18.43631240153181 13 23.00852313605245 26.956125095592203 31.78916468299909 18.24618708535626 14 18.07443154137362 30.832147028296752 31.756661507548404 19.33675992278122 15 17.742533947558133 29.180949194980343 35.668765617045395 17.40775124041613 16 21.805211756362038 27.999038782496783 34.071289324277245 16.124460136863934 17 21.615634246514308 27.10669879489912 30.196216922540913 21.081450036045656 18 21.468822150658426 27.29463288576339 32.336131041116886 18.9004139224613 19 23.43727288862659 28.373336586085575 29.54863680221343 18.640753723074404 20 24.36602373681339 29.223532006862918 29.33082900627202 17.079615250051678 21 23.93815047436376 27.8277214835764 30.96771083422139 17.26641720783845 22 22.81701004384642 25.214210534388727 31.395401494561742 20.57337792720311 23 19.82397887074473 28.712501743850144 31.198081655280816 20.265437730124308 24 19.67895627555973 28.16359980337405 33.58326692703293 18.57417699403329 25 20.56768074139378 29.621056798751294 30.789162491773777 19.02209996808115 26 19.904652482621756 31.768603685494888 28.843463976621088 19.483279855262264 27 18.940330743548483 30.77900981449817 31.03837785051023 19.24228159144312 28 18.1679603417435 30.071974447391238 32.776019522356705 18.98404568850856 29 19.08352731764075 27.718123697590457 32.63570806159096 20.56264092317783 30 19.892892906784546 28.382758854924084 31.774227830460518 19.950120407830855 31 21.598469648242602 28.574162385864554 29.752019031522238 20.07534893437061 32 21.91389653180162 28.78338788267011 29.92322676917706 19.379488816351216 33 21.192252995952806 29.021391471897168 29.499151630600316 20.28720390154971 34 19.691300178146616 29.178794490090915 30.738837350458002 20.391067981304463 35 19.327264613099 28.98118248743515 30.981369471995045 20.710183427470806 36 21.637071734143014 29.769914038231036 29.38856779322429 19.204446434401653 37 20.05800173398963 30.5245720354365 29.87640758835933 19.54101864221454 38 20.208283269921708 30.954344359822567 28.775901196189896 20.061471174065826 39 19.92495783717297 30.44346017849721 29.095747050793335 20.535834933536485 40 21.85535429556854 28.98439628455836 29.170285231798772 19.98996418807433 41 18.988245537021847 29.503424519957317 29.774625172650293 21.733704770370544 42 20.628815927578543 29.440974598585782 28.601589222677433 21.328620251158245 43 20.437704560012914 29.187413309648626 29.309866284127423 21.065015846211043 44 20.557455023274464 29.88999318528928 28.83849719924885 20.714054592187406 45 19.755539600189028 30.681463767724278 28.11842404153979 21.44457259054691 46 20.52546313372975 30.373669652332886 28.606154275409267 20.494712938528096 47 19.77770749625483 29.3217354212302 30.015842559000568 20.884714523514404 48 20.41915218571073 28.75859051623077 30.145928301646997 20.676328996411502 49 20.425689341222718 28.31041189922993 29.708815372468127 21.555083387079222 50 19.3470952021661 30.07668558181049 30.016499926593955 20.559719289429456 51 18.959321362912927 29.719552376493414 29.379182044807635 21.941944215786023 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1254.0 1 1762.5 2 2271.0 3 18082.0 4 33893.0 5 25651.5 6 17410.0 7 16267.5 8 15125.0 9 16356.5 10 17588.0 11 18223.0 12 18858.0 13 19374.5 14 19891.0 15 19326.0 16 18761.0 17 17937.0 18 17113.0 19 17189.0 20 17265.0 21 18182.0 22 19099.0 23 21086.0 24 23073.0 25 25989.0 26 34878.5 27 40852.0 28 48061.0 29 55270.0 30 62930.5 31 70591.0 32 79265.5 33 87940.0 34 98446.0 35 108952.0 36 117179.5 37 125407.0 38 134848.5 39 144290.0 40 156351.0 41 168412.0 42 181147.0 43 193882.0 44 201383.0 45 208884.0 46 215033.0 47 221182.0 48 216142.5 49 211103.0 50 199269.5 51 187436.0 52 173817.5 53 160199.0 54 146131.5 55 132064.0 56 117107.0 57 102150.0 58 93005.0 59 83860.0 60 74821.0 61 65782.0 62 55412.5 63 45043.0 64 37354.5 65 29666.0 66 23848.0 67 18030.0 68 14366.5 69 10703.0 70 8439.0 71 6175.0 72 4914.5 73 3654.0 74 3325.0 75 2264.5 76 1533.0 77 1075.5 78 618.0 79 531.0 80 444.0 81 356.5 82 269.0 83 229.5 84 190.0 85 125.0 86 60.0 87 42.0 88 24.0 89 17.0 90 10.0 91 9.0 92 8.0 93 7.0 94 6.0 95 4.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2738194.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.294787036207772 #Duplication Level Percentage of deduplicated Percentage of total 1 75.62198526473163 17.61598041997166 2 7.204929478730768 3.3567459563585746 3 2.866183018726174 2.0030136908406404 4 1.6799598182091509 1.5653722477827396 5 1.1525949765790042 1.3424727259205396 6 0.855918739394102 1.1963066852691016 7 0.6687704069015656 1.0905204943422995 8 0.5466070626264429 1.0186476093096057 9 0.4786674032064467 1.0035409696981896 >10 7.268771418429451 42.32504609360339 >50 1.5845154801283623 23.966665026476385 >100 0.06883522725433752 2.2929227195556128 >500 0.0014539532673812489 0.24901632379925204 >1k 6.462014521694439E-4 0.2124372295370678 >5k 0.0 0.0 >10k+ 1.6155036304236098E-4 0.7613118075349659 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20230 0.7388081341205188 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.037469952822919046 0.0 2 0.0 0.0 0.0 0.12343902586887562 0.0 3 0.0 0.0 0.0 0.20115448357567067 0.0 4 0.0 0.0 0.0 0.32148927358689705 0.0 5 0.0 0.0 0.0 0.6189115891715489 0.0 6 0.0 0.0 0.0 1.1204830629239564 0.0 7 0.0 0.0 0.0 1.4126099173396771 0.0 8 0.0 0.0 0.0 1.9537330079607216 0.0 9 0.0 0.0 0.0 2.1971416196222764 0.0 10 0.0 0.0 0.0 2.504497489951406 0.0 11 0.0 0.0 0.0 2.8328891232688407 0.0 12 0.0 0.0 0.0 3.0897007297510695 0.0 13 0.0 0.0 0.0 3.2327147017340625 0.0 14 0.0 0.0 0.0 3.3218245310595234 0.0 15 0.0 0.0 0.0 3.407647522418061 0.0 16 0.0 0.0 0.0 3.537441101689654 0.0 17 0.0 0.0 0.0 3.702111683832482 0.0 18 0.0 0.0 0.0 3.8957064400842305 0.0 19 0.0 0.0 0.0 4.032694542461199 0.0 20 0.0 0.0 0.0 4.172494717320979 0.0 21 0.0 0.0 0.0 4.334134104449867 0.0 22 0.0 0.0 0.0 4.5359459556189226 0.0 23 0.0 0.0 0.0 4.746960953095361 0.0 24 0.0 0.0 0.0 4.922076375888633 0.0 25 0.0 0.0 0.0 5.0706414519935405 0.0 26 0.0 0.0 0.0 5.211938964149363 0.0 27 0.0 0.0 0.0 5.361015326160236 0.0 28 0.0 0.0 0.0 5.5185279056195435 0.0 29 0.0 0.0 0.0 5.696747564270464 0.0 30 0.0 0.0 0.0 5.911560685619792 0.0 31 0.0 0.0 0.0 6.101722522217199 0.0 32 0.0 0.0 0.0 6.290058337721871 0.0 33 0.0 0.0 0.0 6.47090746674633 0.0 34 0.0 0.0 0.0 6.64920016624096 0.0 35 0.0 0.0 0.0 6.851085058253725 0.0 36 0.0 0.0 0.0 7.047564927831995 0.0 37 0.0 0.0 0.0 7.242583980536076 0.0 38 0.0 0.0 0.0 7.450275619623738 0.0 39 0.0 0.0 0.0 7.7145008717424695 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTCGCG 25 3.8922233E-5 45.0 1 CGTTTTT 11570 0.0 42.433018 1 CGTAAGG 485 0.0 39.896908 2 TATCGCG 80 0.0 39.375 1 TACGTCG 40 3.4605546E-7 39.375 1 GCGAACG 115 0.0 39.130436 1 CGGGATC 965 0.0 38.704662 6 CGACGGT 105 0.0 38.57143 28 AGGGCGA 2075 0.0 38.493977 6 GGGCGAT 4065 0.0 38.468636 7 GACCGAT 1360 0.0 38.38235 9 GTTAGCG 135 0.0 38.333336 1 CGTTAGG 430 0.0 38.197674 2 GGACCGA 1560 0.0 38.076927 8 TTAGGGA 4530 0.0 37.748344 4 ATAGGGA 4950 0.0 37.68182 4 AGGGATT 6625 0.0 37.664154 6 TAGGGAC 3545 0.0 37.574047 5 TAAGGGA 4735 0.0 37.539597 4 AAGGGAT 6010 0.0 37.437603 5 >>END_MODULE