SRR1547965_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547965_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1285442
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27596	2.146810202249499	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2443	0.19005135976574594	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTT	2411	0.18756194367384915	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTC	1918	0.14920937700806414	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTC	1909	0.14850922873221817	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCT	1647	0.12812713447981317	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCACG	30	2.1657033E-6	44.999996	1
CGTTTTT	11330	0.0	43.272285	1
AAATGCG	60	3.6379788E-12	41.249996	1
TTGTACG	55	6.184564E-11	40.909092	1
TGTTACG	45	1.9286745E-8	40.0	1
ACGGGAT	575	0.0	39.52174	5
CGTTCGA	40	3.4586446E-7	39.375	14
GCCGACC	40	3.4586446E-7	39.375	14
TAGGGAT	1685	0.0	38.9911	5
CTTGCGG	110	0.0	38.863636	2
AGGGATC	1205	0.0	38.838173	6
AAGGGCG	420	0.0	38.57143	5
TAGGGAC	1430	0.0	38.54895	5
GGCGATA	345	0.0	38.47826	8
TAGGGCG	410	0.0	38.414635	5
CGGGATC	340	0.0	38.38235	6
TAAGGGA	1670	0.0	38.128742	4
AGGGCGA	1055	0.0	37.96209	6
ATTAGCG	95	0.0	37.894737	1
CGGTTTT	940	0.0	37.57979	1