##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547962_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4134477 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.872859130671184 31.0 31.0 31.0 30.0 33.0 2 31.1997144983513 31.0 31.0 33.0 30.0 34.0 3 31.284205233213292 31.0 31.0 34.0 30.0 34.0 4 35.24012275313177 37.0 35.0 37.0 33.0 37.0 5 35.13109856458266 37.0 35.0 37.0 32.0 37.0 6 35.18108553996068 37.0 35.0 37.0 32.0 37.0 7 35.557235897067514 35.0 35.0 37.0 35.0 37.0 8 35.64561974827772 37.0 35.0 37.0 35.0 37.0 9 37.46343660878994 39.0 37.0 39.0 35.0 39.0 10 36.44191345120556 38.0 35.0 39.0 32.0 39.0 11 36.19720341895722 38.0 35.0 39.0 31.0 39.0 12 35.88288869426532 37.0 35.0 39.0 31.0 39.0 13 35.75729650932875 37.0 35.0 39.0 30.0 39.0 14 36.740220588964455 39.0 35.0 40.0 31.0 41.0 15 36.87218625233615 39.0 35.0 40.0 31.0 41.0 16 36.9516357207937 39.0 35.0 41.0 31.0 41.0 17 36.86950683242403 38.0 35.0 40.0 31.0 41.0 18 36.7562535720963 38.0 35.0 40.0 31.0 41.0 19 36.68346056828953 38.0 35.0 40.0 31.0 41.0 20 36.538634995429895 38.0 35.0 40.0 30.0 41.0 21 36.44965348700694 38.0 35.0 40.0 30.0 41.0 22 36.336280985478936 38.0 35.0 40.0 30.0 41.0 23 36.24293060524947 38.0 34.0 40.0 30.0 41.0 24 36.12508498656541 38.0 34.0 40.0 30.0 41.0 25 35.96022278029361 38.0 34.0 40.0 30.0 41.0 26 35.753956304509614 38.0 34.0 40.0 29.0 41.0 27 35.86436760925263 38.0 34.0 40.0 29.0 41.0 28 35.8872590172832 38.0 34.0 40.0 30.0 41.0 29 35.86756994899234 38.0 34.0 40.0 29.0 41.0 30 35.75714993698114 38.0 34.0 40.0 29.0 41.0 31 35.65329036780226 38.0 34.0 40.0 29.0 41.0 32 35.47707243261965 38.0 34.0 40.0 27.0 41.0 33 35.279589897343726 38.0 34.0 40.0 27.0 41.0 34 35.023557030308794 38.0 34.0 40.0 25.0 41.0 35 34.79794445585258 38.0 33.0 40.0 24.0 41.0 36 34.71253365298682 38.0 33.0 40.0 24.0 41.0 37 34.65888720628994 38.0 33.0 40.0 24.0 41.0 38 34.55898968599898 38.0 33.0 40.0 23.0 41.0 39 34.50787173323252 38.0 33.0 40.0 23.0 41.0 40 34.344950522157944 37.0 33.0 40.0 23.0 41.0 41 34.265774365173634 37.0 33.0 40.0 23.0 41.0 42 34.23004046219147 37.0 33.0 40.0 23.0 41.0 43 34.18715426400969 37.0 33.0 40.0 23.0 41.0 44 34.04833162695064 37.0 33.0 40.0 22.0 41.0 45 33.921855412425806 37.0 33.0 40.0 22.0 41.0 46 33.858960879453434 37.0 33.0 40.0 22.0 41.0 47 33.80370262067004 37.0 33.0 40.0 22.0 41.0 48 33.71872669747589 36.0 32.0 40.0 22.0 41.0 49 33.595103080752416 36.0 32.0 40.0 21.0 41.0 50 33.51161126304488 36.0 32.0 40.0 20.0 41.0 51 33.19504183963292 36.0 31.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 14.0 14 70.0 15 173.0 16 420.0 17 1178.0 18 2544.0 19 4691.0 20 8253.0 21 12808.0 22 19544.0 23 28678.0 24 42716.0 25 61768.0 26 80817.0 27 91112.0 28 97990.0 29 109609.0 30 128602.0 31 155004.0 32 188954.0 33 236137.0 34 331487.0 35 373283.0 36 365449.0 37 453272.0 38 611776.0 39 728052.0 40 74.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.82670988374104 25.59569203069699 28.571594424155705 14.006003661406266 2 32.060258165664 26.84216165672224 27.75064415644349 13.346936021170272 3 29.432864180886725 25.613517743598525 31.394684261153223 13.558933814361525 4 25.25446386568362 28.248530588028427 31.555139864123078 14.94186568216488 5 23.50872915727914 32.09532910692211 30.31527324979677 14.08066848600198 6 21.793397326917045 41.23542107018615 26.900959903755663 10.070221699141149 7 89.50912050060987 2.581680826861535 6.919980447345578 0.9892182251830158 8 89.83162803904823 2.1605634763477943 6.812494059103486 1.1953144255004926 9 84.76288536615392 4.275026805083206 9.025833255330722 1.9362545734321415 10 34.933559915800714 28.264445539302795 25.412573343617584 11.389421201278903 11 30.652800825836014 26.0920546903514 26.068593439992533 17.186551043820053 12 28.813849974253092 24.053513902725786 28.72256877955785 18.410067343463272 13 24.41143099840681 26.630139676674947 30.122890996854018 18.835538328064228 14 20.692919563949687 28.472307380111197 31.634037388525805 19.200735667413316 15 21.194047034243994 26.593448216062153 34.76084157681854 17.45166317287531 16 24.657991808879334 25.418354002211164 32.57471259363639 17.348941595273114 17 23.955750630611806 25.10310252058483 30.065350466334678 20.87579638246869 18 24.318214855228366 25.19484326554483 31.955529079010475 18.531412800216327 19 25.42599704871983 27.224313982155422 28.745304424235517 18.604384544889232 20 26.719800352015504 27.304227354511827 28.893835907177618 17.082136386295048 21 25.429818571974156 26.677497540801415 30.5512160304677 17.341467856756733 22 24.79290609187087 23.66654839294063 31.116293548131964 20.424251967056534 23 22.10971303020914 26.782468496015337 31.287270433479254 19.82054804029627 24 21.84772100558305 26.40795921709082 33.188671747357645 18.555648029968484 25 22.350589929512246 27.734511523464754 30.471157536975053 19.443741010047948 26 21.512031630602856 28.84014108676865 29.277560378253405 20.370266904375086 27 20.350240187573906 28.68007247349544 31.086809770619112 19.882877568311542 28 18.99014071187238 28.752439546767345 32.36868895388703 19.888730787473243 29 20.55786015982191 27.10028378438192 32.16247181928936 20.179384236506817 30 21.602635593328976 27.17961667219336 32.173718707347994 19.04402902712967 31 23.85762455565722 27.262359906706457 29.790200792022787 19.08981474561353 32 24.205891095778256 26.814419332844274 29.961564667066714 19.018124904310753 33 23.902031623346797 27.567694777356362 28.762452905167933 19.767820694128908 34 20.925185942502523 28.031574489348955 31.075248453431957 19.967991114716565 35 21.42989306749076 28.15543537913018 30.727804266416285 19.686867286962777 36 23.583442355586932 29.71275447898247 28.048118298880365 18.65568486655023 37 21.734937695868183 29.694686897520533 28.51574697355917 20.054628433052113 38 22.35477425560718 29.740859605701036 27.79746990973707 20.106896228954714 39 21.777554936210795 28.72960715466551 28.16992330589818 21.32291460322551 40 23.538575737632595 27.527254354057355 28.452570905582498 20.481599002727553 41 20.511058593384362 27.426637032930646 29.11400885771042 22.94829551597457 42 21.683975990191744 27.466013234563892 28.69973638745602 22.150274387788347 43 21.60756971196115 27.186074562756062 29.242513623851334 21.96384210143145 44 21.379898836055926 27.906794499038213 28.78015768378927 21.933148981116595 45 21.090841719520995 29.057726043705166 27.727231279796694 22.12420095697715 46 21.798017016420697 28.844301226007545 28.254383807190127 21.103297950381634 47 21.0937441422458 28.404245567214424 29.54726800995628 20.954742280583496 48 21.715346342475723 28.027245042117784 29.89466382325987 20.362744792146625 49 22.166818197319756 27.310491750226205 29.69693627513226 20.825753777321776 50 21.07642635332111 28.343173755713234 29.28225262832518 21.298147262640473 51 20.410151029985172 29.098964633253495 28.630561979181408 21.860322357579932 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1148.0 1 2592.5 2 4037.0 3 25753.0 4 47469.0 5 37632.5 6 27796.0 7 25863.0 8 23930.0 9 24139.5 10 24349.0 11 24550.5 12 24752.0 13 24166.5 14 23581.0 15 23055.5 16 22530.0 17 21768.0 18 21006.0 19 20983.5 20 20961.0 21 21350.0 22 21739.0 23 24493.5 24 27248.0 25 31822.0 26 43891.0 27 51386.0 28 60157.5 29 68929.0 30 83370.0 31 97811.0 32 110926.0 33 124041.0 34 140353.5 35 156666.0 36 165157.5 37 173649.0 38 189700.0 39 205751.0 40 224115.5 41 242480.0 42 257518.5 43 272557.0 44 276943.5 45 281330.0 46 286732.0 47 292134.0 48 289144.0 49 286154.0 50 281700.0 51 277246.0 52 262279.5 53 247313.0 54 230260.0 55 213207.0 56 202066.0 57 190925.0 58 177696.0 59 164467.0 60 150740.0 61 137013.0 62 119891.0 63 102769.0 64 89054.0 65 75339.0 66 63240.0 67 51141.0 68 41963.5 69 32786.0 70 27482.5 71 22179.0 72 19100.0 73 16021.0 74 13292.0 75 8689.5 76 6816.0 77 5031.0 78 3246.0 79 2483.5 80 1721.0 81 1352.5 82 984.0 83 733.5 84 483.0 85 350.0 86 217.0 87 161.0 88 105.0 89 91.5 90 78.0 91 51.0 92 24.0 93 14.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4134477.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.768925251464072 #Duplication Level Percentage of deduplicated Percentage of total 1 77.75028355025356 16.147898273353526 2 6.770186082305646 2.812189773638167 3 2.260863341059383 1.4086710520271293 4 1.1849312984328777 0.984389982610908 5 0.8005598478144335 0.8313383819290711 6 0.6098272696348517 0.7599274187610394 7 0.4666469453883375 0.6784228869316092 8 0.4083978563304456 0.678558764078815 9 0.35962606512664064 0.6722142178584014 >10 7.03089542442594 38.64629276668264 >50 2.1841628214994055 30.4699432678585 >100 0.17024942061081685 4.7510961231139195 >500 0.0027682776323399447 0.3690624559263953 >1k 4.8143958822769215E-4 0.200354618275719 >5k 0.0 0.0 >10k+ 1.2035989705692304E-4 0.5896400169541682 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23588 0.5705195602732824 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4186856040074718E-5 0.0 0.0 0.010666403513672951 0.0 2 2.4186856040074718E-5 0.0 0.0 0.04619689503654271 0.0 3 2.4186856040074718E-5 0.0 0.0 0.07207683099942266 0.0 4 2.4186856040074718E-5 0.0 0.0 0.12323203152418069 0.0 5 2.4186856040074718E-5 0.0 0.0 0.24007873305378166 0.0 6 2.4186856040074718E-5 0.0 0.0 0.44085382504244186 0.0 7 2.4186856040074718E-5 0.0 0.0 0.5470824967704501 0.0 8 2.4186856040074718E-5 0.0 0.0 0.7971262145127425 0.0 9 2.4186856040074718E-5 0.0 0.0 0.9003073423797012 0.0 10 2.4186856040074718E-5 0.0 0.0 1.077621184009489 0.0 11 2.4186856040074718E-5 0.0 0.0 1.2762194589545426 0.0 12 2.4186856040074718E-5 0.0 0.0 1.4020636709310512 0.0 13 2.4186856040074718E-5 0.0 0.0 1.4606684231161522 0.0 14 2.4186856040074718E-5 0.0 0.0 1.4891847263874003 0.0 15 2.4186856040074718E-5 0.0 0.0 1.533059683244096 0.0 16 2.4186856040074718E-5 0.0 0.0 1.6408121269026288 0.0 17 2.4186856040074718E-5 0.0 0.0 1.7676238131207405 0.0 18 2.4186856040074718E-5 0.0 0.0 1.9188400370832877 0.0 19 2.4186856040074718E-5 0.0 0.0 1.9983906065990935 0.0 20 2.4186856040074718E-5 0.0 0.0 2.0880996556517304 0.0 21 2.4186856040074718E-5 0.0 0.0 2.21092051062323 0.0 22 2.4186856040074718E-5 0.0 0.0 2.3544211275089935 0.0 23 2.4186856040074718E-5 0.0 0.0 2.514634861918448 0.0 24 2.4186856040074718E-5 0.0 0.0 2.6415916692728003 0.0 25 2.4186856040074718E-5 0.0 0.0 2.755076397812831 0.0 26 2.4186856040074718E-5 0.0 0.0 2.8701090851394264 0.0 27 2.4186856040074718E-5 0.0 0.0 3.0041768281695607 0.0 28 2.4186856040074718E-5 0.0 0.0 3.1342295530970423 0.0 29 2.4186856040074718E-5 0.0 0.0 3.283389894296183 0.0 30 2.4186856040074718E-5 0.0 0.0 3.453350931689788 0.0 31 2.4186856040074718E-5 0.0 0.0 3.6027531414493295 0.0 32 2.4186856040074718E-5 0.0 0.0 3.7500994684454647 0.0 33 2.4186856040074718E-5 0.0 0.0 3.9079912646750725 0.0 34 2.4186856040074718E-5 0.0 0.0 4.077226696387475 0.0 35 2.4186856040074718E-5 0.0 0.0 4.271326216109075 0.0 36 2.4186856040074718E-5 0.0 0.0 4.444745973916411 0.0 37 2.4186856040074718E-5 0.0 0.0 4.636015631481322 0.0 38 2.4186856040074718E-5 0.0 0.0 4.850069307435983 0.0 39 2.4186856040074718E-5 2.4186856040074718E-5 0.0 5.148027186993663 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 18655 0.0 41.5264 1 CACGACC 1465 0.0 38.70307 27 GGGCGAT 6800 0.0 38.61397 7 GCGATAT 445 0.0 37.92135 9 ACGGGTA 995 0.0 37.53769 5 AACACGT 1475 0.0 37.372883 41 ACGGGAT 1340 0.0 37.276115 5 ACGGGTC 790 0.0 37.025314 5 GCGAGAC 1520 0.0 37.00658 21 AGGGCGA 3485 0.0 36.994263 6 TAGGGAT 4880 0.0 36.885246 5 GGCGATA 1525 0.0 36.885246 8 GTAGGGA 4635 0.0 36.60194 4 GGCACCG 1660 0.0 36.596386 8 TAGGGTC 2830 0.0 36.57244 5 TGGGCGA 2020 0.0 36.53465 6 CGTTAGG 635 0.0 36.496063 2 ACACGAC 1560 0.0 36.490383 26 ACGACCA 1540 0.0 36.379868 28 AGGGTAC 2765 0.0 36.374317 6 >>END_MODULE