##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547958_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2699161 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.391272695478335 31.0 31.0 33.0 30.0 34.0 2 31.783696118905098 31.0 31.0 34.0 30.0 34.0 3 31.87906056733926 31.0 31.0 34.0 30.0 34.0 4 35.64804433674019 37.0 35.0 37.0 33.0 37.0 5 35.56400340698462 37.0 35.0 37.0 33.0 37.0 6 35.627884738998524 37.0 35.0 37.0 33.0 37.0 7 35.967853714543146 37.0 35.0 37.0 35.0 37.0 8 35.97949362783472 37.0 35.0 37.0 35.0 37.0 9 37.76309342051104 39.0 38.0 39.0 35.0 39.0 10 37.21880984498517 39.0 37.0 39.0 33.0 39.0 11 36.94753110318354 39.0 37.0 39.0 33.0 39.0 12 36.47223489076791 39.0 35.0 39.0 32.0 39.0 13 36.307876039999094 39.0 35.0 39.0 32.0 39.0 14 37.365112714654664 39.0 35.0 41.0 32.0 41.0 15 37.562924182736786 40.0 35.0 41.0 32.0 41.0 16 37.63667858271515 40.0 35.0 41.0 33.0 41.0 17 37.5694599173595 39.0 35.0 41.0 33.0 41.0 18 37.481812681792604 39.0 36.0 41.0 32.0 41.0 19 37.43345728543055 39.0 36.0 41.0 32.0 41.0 20 37.28210803282946 39.0 35.0 41.0 32.0 41.0 21 37.17027031733194 39.0 35.0 41.0 32.0 41.0 22 37.09804972730415 39.0 35.0 41.0 32.0 41.0 23 36.96525364733708 39.0 35.0 41.0 32.0 41.0 24 36.943494663712166 39.0 35.0 41.0 32.0 41.0 25 36.96755991954537 39.0 35.0 41.0 32.0 41.0 26 36.88640433082725 39.0 35.0 41.0 32.0 41.0 27 36.817613695515014 39.0 35.0 41.0 31.0 41.0 28 36.776643927501915 39.0 35.0 41.0 31.0 41.0 29 36.77615340470613 38.0 35.0 41.0 31.0 41.0 30 36.71615105582809 38.0 35.0 41.0 31.0 41.0 31 36.57417545674378 38.0 35.0 41.0 31.0 41.0 32 36.42773032064408 38.0 35.0 41.0 30.0 41.0 33 36.31439250937606 38.0 35.0 41.0 30.0 41.0 34 36.17744588040506 38.0 35.0 41.0 30.0 41.0 35 36.10193426772245 38.0 35.0 41.0 30.0 41.0 36 36.014005092693615 38.0 35.0 41.0 30.0 41.0 37 35.92883232974987 38.0 35.0 41.0 29.0 41.0 38 35.83125904679269 38.0 35.0 40.0 29.0 41.0 39 35.76646891385879 38.0 35.0 40.0 29.0 41.0 40 35.61575800776612 38.0 35.0 40.0 27.0 41.0 41 35.528730594432865 38.0 35.0 40.0 27.0 41.0 42 35.52388834900919 38.0 35.0 40.0 27.0 41.0 43 35.46168049997758 38.0 35.0 40.0 27.0 41.0 44 35.309679563390254 38.0 34.0 40.0 27.0 41.0 45 35.20737110531754 38.0 34.0 40.0 27.0 41.0 46 35.17908083289585 38.0 34.0 40.0 26.0 41.0 47 35.12860737095712 38.0 34.0 40.0 26.0 41.0 48 35.03574110621782 38.0 34.0 40.0 26.0 41.0 49 34.904670006716906 37.0 34.0 40.0 26.0 41.0 50 34.80305102215096 37.0 34.0 40.0 25.0 41.0 51 34.48213982048496 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 5.0 13 12.0 14 19.0 15 63.0 16 141.0 17 372.0 18 898.0 19 1707.0 20 3035.0 21 4966.0 22 7953.0 23 11924.0 24 17949.0 25 26772.0 26 35517.0 27 40909.0 28 45092.0 29 51535.0 30 61087.0 31 75439.0 32 94241.0 33 122039.0 34 200941.0 35 291901.0 36 195626.0 37 254278.0 38 403981.0 39 750635.0 40 122.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.61440832910671 24.023465069330804 29.55674003884911 12.805386562713378 2 30.461169229994063 25.716880171282853 30.447313072469555 13.374637526253528 3 29.219894626515426 25.674570727718727 31.771391184149444 13.334143461616407 4 25.168042958534155 28.357552587637418 31.704444455147357 14.76995999868107 5 23.581549970527877 33.27593278059368 29.39754242151543 13.744974827363022 6 21.739496087858413 41.90505864600148 26.085698481861584 10.26974678427852 7 89.6328525790051 3.1371970771658306 5.894831764389008 1.3351185794400555 8 90.14704939794255 2.5466431976454906 5.5961463580720086 1.710161046339955 9 85.57740720171935 5.4880016419917155 6.766732329045952 2.167858827242984 10 38.33457878207339 41.60433556946029 11.297769936658094 8.763315711808223 11 32.14246945624955 24.92533791055813 27.629511540808423 15.302681092383894 12 31.114261061122328 23.920951732779187 28.12988925077089 16.834897955327598 13 23.401864505303685 31.72419133204725 28.806321668103536 16.067622494545528 14 17.484655416998095 35.049483895180764 29.834048432086856 17.631812255734282 15 16.1683945492692 28.23799691830165 39.356377778131794 16.237230754297354 16 19.787296867433994 26.494640371582136 37.39413840078454 16.323924360199335 17 19.628729075442333 25.41074800651017 29.525434014495616 25.435088903551883 18 21.492122922641517 26.99901932489392 32.53277592555613 18.976081826908437 19 24.392320428459065 27.930123471701023 28.869193056657235 18.808363043182677 20 26.746607556940845 28.110327616618648 27.57434625055712 17.568718575883395 21 22.738250886108684 28.691878698603013 30.832173404995107 17.7376970102932 22 21.949450218049236 25.04441194875 29.89380774247998 23.112330090720786 23 18.24815192572803 29.672294464835552 30.202125771674975 21.877427837761438 24 19.023207581911564 27.386065521841786 35.22498287430798 18.365744021938667 25 18.65568597056641 28.978819714718757 32.66889229653214 19.696602018182688 26 18.819514656591437 33.23191910375113 28.422646889162966 19.52591935049447 27 18.09525256181458 32.737395064614525 30.918867010897088 18.248485362673808 28 16.67306989097723 30.08831262751648 35.0297740668304 18.208843414675894 29 17.58798382163939 27.950500173942938 33.78868470609942 20.672831298318258 30 18.97867522537559 30.587912317938798 31.932589423157786 18.500823033527823 31 23.339956379037783 28.984673385544617 28.769384264221365 18.905985971196234 32 23.989862034906402 29.80959638939656 28.82469774867079 17.375843827026248 33 23.47907368252579 29.90532984138404 27.99807051154044 18.617525964549724 34 19.177181353761412 30.24617649706705 30.084422529815747 20.492219619355794 35 19.37235311268946 29.630911235009695 30.08312583058217 20.913609821718676 36 23.728743857813594 29.17936351332877 28.613372822147326 18.47851980671031 37 19.886068300483 31.672249265605128 29.830936353926273 18.610746079985596 38 19.509284551755158 32.0664087840629 27.878996473348572 20.545310190833373 39 20.07675718491783 30.7199162999169 28.674873414368392 20.528453100796877 40 22.099607989297414 28.817880815557128 28.478034470711457 20.604476724434 41 18.284237212970993 28.59432986768852 29.060734057731274 24.060698861609218 42 20.77804917898562 28.962925886970066 27.691975395317286 22.567049538727034 43 20.741667503346413 28.466401226158794 29.108860123571734 21.683071146923062 44 19.480460780220223 30.97481032068854 29.223969966963807 20.32075893212743 45 18.661836029788514 33.11503092998158 27.077969783943974 21.145163256285933 46 20.706730721138904 31.344777136302724 28.223029304291224 19.72546283826715 47 19.802746112588316 29.97298049282722 29.02561203277611 21.198661361808355 48 20.766638225730144 28.584956584657235 30.159705182462254 20.48870000715037 49 20.86911451373223 27.07819207524116 30.937428334212 21.11526507681461 50 19.19500170608571 31.212106280433066 28.918912210127516 20.67397980335371 51 18.273085599562233 31.730193197071237 27.549931256416343 22.446789946950183 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2241.0 1 3356.0 2 4471.0 3 13918.5 4 23366.0 5 17569.0 6 11772.0 7 11533.0 8 11294.0 9 12111.0 10 12928.0 11 14185.0 12 15442.0 13 15173.0 14 14904.0 15 14782.0 16 14660.0 17 13917.0 18 13174.0 19 13268.0 20 13362.0 21 14441.0 22 15520.0 23 17241.0 24 18962.0 25 22472.5 26 30688.5 27 35394.0 28 41899.0 29 48404.0 30 57886.0 31 67368.0 32 77502.0 33 87636.0 34 95948.0 35 104260.0 36 115822.0 37 127384.0 38 137669.0 39 147954.0 40 168132.5 41 188311.0 42 212638.5 43 236966.0 44 245398.0 45 253830.0 46 253587.0 47 253344.0 48 232376.5 49 211409.0 50 195562.0 51 179715.0 52 161035.0 53 142355.0 54 127787.0 55 113219.0 56 103327.5 57 93436.0 58 83390.0 59 73344.0 60 63341.5 61 53339.0 62 44005.5 63 34672.0 64 28645.5 65 22619.0 66 17464.5 67 12310.0 68 9001.0 69 5692.0 70 4643.0 71 3594.0 72 2877.5 73 2161.0 74 1621.0 75 821.5 76 562.0 77 417.5 78 273.0 79 281.0 80 289.0 81 173.5 82 58.0 83 55.0 84 52.0 85 34.0 86 16.0 87 16.5 88 17.0 89 12.5 90 8.0 91 8.5 92 9.0 93 5.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2699161.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.16502117439188 #Duplication Level Percentage of deduplicated Percentage of total 1 75.85814649353662 15.296811302922869 2 9.769457752737846 3.9400264489257117 3 3.4800977762401533 2.1052873604051037 4 1.7775417248220275 1.43376666077605 5 1.0487605042301447 1.0574138887333384 6 0.7044770761113878 0.8523477093995889 7 0.4870331334583208 0.6874723414172226 8 0.37698340506769945 0.6081502676467608 9 0.2927983698430505 0.5313856794941285 >10 3.287668026734958 16.276585911335783 >50 1.8739031660539054 27.812536164469975 >100 1.0369690507367073 27.83697669979885 >500 0.00504288034957304 0.6569160371277605 >1k 9.338667314024149E-4 0.3583246862305649 >5k 0.0 0.0 >10k+ 1.8677334628048296E-4 0.5459988413164283 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14497 0.5370928225474508 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3879 0.14371132362982422 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.7048549530761595E-5 0.0 0.0 0.06650214640771707 0.0 2 3.7048549530761595E-5 0.0 0.0 0.2197719958164778 0.0 3 3.7048549530761595E-5 0.0 0.0 0.3292134111303475 0.0 4 3.7048549530761595E-5 0.0 0.0 0.5301647437851984 0.0 5 3.7048549530761595E-5 0.0 0.0 0.9197672906506874 0.0 6 3.7048549530761595E-5 0.0 0.0 1.3245597428237885 0.0 7 3.7048549530761595E-5 0.0 0.0 1.543924204595428 0.0 8 3.7048549530761595E-5 0.0 0.0 2.093984019478645 0.0 9 3.7048549530761595E-5 0.0 0.0 2.2822647481939757 0.0 10 3.7048549530761595E-5 0.0 0.0 2.6518981268623842 0.0 11 3.7048549530761595E-5 0.0 0.0 3.1732823644087924 0.0 12 3.7048549530761595E-5 0.0 0.0 3.5816314773368467 0.0 13 3.7048549530761595E-5 0.0 0.0 3.7503876204494655 0.0 14 3.7048549530761595E-5 0.0 0.0 3.820557573260728 0.0 15 3.7048549530761595E-5 0.0 0.0 3.9365936303910734 0.0 16 3.7048549530761595E-5 0.0 0.0 4.190598485973974 0.0 17 3.7048549530761595E-5 0.0 0.0 4.520330576797753 0.0 18 3.7048549530761595E-5 0.0 0.0 4.909081007024034 0.0 19 3.7048549530761595E-5 0.0 0.0 5.137633509079302 0.0 20 3.7048549530761595E-5 0.0 0.0 5.378967760722684 0.0 21 3.7048549530761595E-5 0.0 0.0 5.679135109020915 0.0 22 3.7048549530761595E-5 0.0 0.0 6.0284288339969345 0.0 23 3.7048549530761595E-5 0.0 0.0 6.399395960448451 0.0 24 3.7048549530761595E-5 0.0 0.0 6.664293089593396 0.0 25 3.7048549530761595E-5 0.0 0.0 6.889807610587142 0.0 26 3.7048549530761595E-5 0.0 0.0 7.116507685165872 0.0 27 3.7048549530761595E-5 0.0 0.0 7.344949041572548 0.0 28 3.7048549530761595E-5 0.0 0.0 7.599324382650757 0.0 29 3.7048549530761595E-5 0.0 0.0 7.873965280322293 0.0 30 3.7048549530761595E-5 0.0 0.0 8.211440517998 0.0 31 3.7048549530761595E-5 0.0 0.0 8.517646779869745 0.0 32 3.7048549530761595E-5 0.0 0.0 8.799438047600717 0.0 33 3.7048549530761595E-5 0.0 0.0 9.073300925732108 0.0 34 3.7048549530761595E-5 0.0 0.0 9.370096856023038 0.0 35 3.7048549530761595E-5 0.0 0.0 9.705608520573616 0.0 36 3.7048549530761595E-5 0.0 0.0 10.017001579379667 0.0 37 3.7048549530761595E-5 0.0 0.0 10.330506405508972 0.0 38 3.7048549530761595E-5 0.0 0.0 10.658867700000112 0.0 39 3.7048549530761595E-5 0.0 0.0 11.065327336902097 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATACCG 20 7.034979E-4 45.0 1 CGCACGA 20 7.034979E-4 45.0 20 TCGCGTG 20 7.034979E-4 45.0 1 CGACGGT 400 0.0 43.3125 28 GCTACGA 85 0.0 42.35294 10 CGGTCTA 415 0.0 42.289154 31 CGTTTTT 7765 0.0 41.49388 1 GCGCGAC 260 0.0 40.673077 9 CGTAAGG 405 0.0 40.0 2 TCGCGAG 130 0.0 39.80769 1 CTACGGG 470 0.0 39.734043 3 CGCGAGG 380 0.0 39.67105 2 GACGTAC 40 3.4605364E-7 39.375 9 TACGACG 40 3.4605364E-7 39.375 1 ACGCGGT 40 3.4605364E-7 39.375 23 ACGGTCT 440 0.0 38.863636 30 AGGGATC 4015 0.0 38.667496 6 AGGGATT 6480 0.0 38.61111 6 ACGGGAT 1440 0.0 38.59375 5 CGGTCGT 35 6.2514227E-6 38.571426 26 >>END_MODULE