##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547952_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2021230 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.31981664629953 31.0 31.0 33.0 30.0 34.0 2 31.714036997273936 31.0 31.0 34.0 30.0 34.0 3 31.84718463509843 31.0 31.0 34.0 30.0 34.0 4 35.63017024287191 37.0 35.0 37.0 33.0 37.0 5 35.52513716895158 37.0 35.0 37.0 33.0 37.0 6 35.577172810615316 37.0 35.0 37.0 33.0 37.0 7 35.861986513162776 37.0 35.0 37.0 35.0 37.0 8 35.85152011399 37.0 35.0 37.0 35.0 37.0 9 37.62020650791845 39.0 37.0 39.0 35.0 39.0 10 37.09361576861614 39.0 37.0 39.0 33.0 39.0 11 36.86445827540656 39.0 37.0 39.0 33.0 39.0 12 36.200216699732344 38.0 35.0 39.0 32.0 39.0 13 35.90878920261425 38.0 35.0 39.0 31.0 39.0 14 36.932294197097804 39.0 35.0 41.0 31.0 41.0 15 37.122121678383955 39.0 35.0 41.0 32.0 41.0 16 37.24181166913216 39.0 35.0 41.0 32.0 41.0 17 37.17584639056416 39.0 35.0 41.0 32.0 41.0 18 37.106897780064614 39.0 35.0 41.0 32.0 41.0 19 37.0467047292985 39.0 35.0 41.0 32.0 41.0 20 36.91285454896276 38.0 35.0 41.0 32.0 41.0 21 36.796721303364784 38.0 35.0 41.0 31.0 41.0 22 36.70006778050989 38.0 35.0 41.0 31.0 41.0 23 36.59525190107014 38.0 35.0 40.0 31.0 41.0 24 36.53115578138065 38.0 35.0 40.0 31.0 41.0 25 36.5786070857844 38.0 35.0 40.0 31.0 41.0 26 36.461094482072795 38.0 35.0 40.0 31.0 41.0 27 36.38239438361789 38.0 35.0 40.0 31.0 41.0 28 36.346621611592944 38.0 35.0 40.0 30.0 41.0 29 36.36164761061334 38.0 35.0 40.0 30.0 41.0 30 36.29487985038813 38.0 35.0 40.0 30.0 41.0 31 36.156356772856135 38.0 35.0 40.0 30.0 41.0 32 36.01504430470555 38.0 35.0 40.0 30.0 41.0 33 35.92390326682268 38.0 35.0 40.0 30.0 41.0 34 35.795980665238496 38.0 35.0 40.0 29.0 41.0 35 35.743403768992145 38.0 35.0 40.0 29.0 41.0 36 35.626039095006504 38.0 35.0 40.0 29.0 41.0 37 35.52239725315773 38.0 34.0 40.0 28.0 41.0 38 35.42787856899017 38.0 34.0 40.0 27.0 41.0 39 35.36555612176744 38.0 34.0 40.0 27.0 41.0 40 35.2132404525957 38.0 34.0 40.0 27.0 41.0 41 35.115523715757234 37.0 34.0 40.0 26.0 41.0 42 35.09548146425691 37.0 34.0 40.0 26.0 41.0 43 35.01775552510105 37.0 34.0 40.0 26.0 41.0 44 34.89715519757771 37.0 34.0 40.0 26.0 41.0 45 34.79022723787001 37.0 34.0 40.0 26.0 41.0 46 34.73055367276361 37.0 34.0 40.0 26.0 41.0 47 34.66330155400424 37.0 34.0 40.0 26.0 41.0 48 34.550333212944594 36.0 34.0 40.0 25.0 41.0 49 34.42114306635069 36.0 33.0 40.0 24.0 41.0 50 34.306107172365344 36.0 33.0 40.0 24.0 41.0 51 33.98318103333119 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 3.0 11 4.0 12 2.0 13 3.0 14 21.0 15 64.0 16 141.0 17 382.0 18 917.0 19 1740.0 20 3019.0 21 4720.0 22 7199.0 23 10539.0 24 15211.0 25 21497.0 26 28215.0 27 33082.0 28 37017.0 29 43075.0 30 51233.0 31 62580.0 32 77585.0 33 101424.0 34 172141.0 35 243265.0 36 146621.0 37 189348.0 38 292002.0 39 478095.0 40 82.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.95150477679433 24.505424914532238 28.78494777932249 12.75812252935094 2 30.09805910262563 26.512569079224036 30.245296181038277 13.144075637112055 3 28.870687650588998 26.86863939284495 30.548923180439637 13.711749776126418 4 26.677369720417765 28.232264512202963 30.33108552712952 14.759280240249751 5 24.056589304532388 32.56497281358381 28.83090989150171 14.547527990382095 6 21.648253786060963 41.747896083078125 25.810768690351914 10.793081440508997 7 89.35751992598566 3.4639798538513675 5.603221800586771 1.5752784195761986 8 89.55076859140226 3.164360315253583 5.419027028096753 1.865844065247399 9 84.40073618539206 5.938661112293009 6.783938492897888 2.8766642094170383 10 40.50261474448727 37.20516715069537 12.120293088861732 10.171925015955631 11 38.568248046981296 22.529449889423766 23.2464885243144 15.655813539280535 12 36.50420783384375 21.764024875941875 25.117626395808497 16.61414089440588 13 24.482270696556057 32.81467225402354 25.82477006575204 16.87828698366836 14 18.788361542229236 35.87746075409528 27.556982629389037 17.77719507428645 15 17.018201788020164 26.97990827367494 39.475715282278614 16.52617465602628 16 20.951153505538706 24.259436085947666 37.67923492131029 17.110175487203335 17 20.641045304097013 24.062575758325377 27.498800235500166 27.79757870207745 18 23.21432988823637 25.544544658450548 31.579434304853976 19.661691148459106 19 26.338368221330576 27.954611795787716 25.608614556482934 20.098405426398777 20 27.93600926168719 27.11640931512 25.804980135857868 19.14260128733494 21 24.27393220959515 27.45857720299026 28.63672120441513 19.63076938299946 22 23.42885272828921 24.264581467720152 28.054550941753288 24.25201486223735 23 19.309925144590174 29.91856443848548 27.90330640253707 22.868204014387278 24 20.724954606848307 26.303537944716833 33.82539344854371 19.146113999891156 25 20.047495831746016 27.70407128332748 30.949867160095586 21.29856572483092 26 19.537014590125814 33.155850645399084 25.93128936340743 21.375845401067668 27 19.321997001825622 31.801526793091334 28.733592911247115 20.14288329383593 28 17.200565991994974 29.6481350464816 33.908461679274495 19.242837282248928 29 18.69089613750043 26.761229548344325 32.87953374925169 21.66834056490355 30 19.929745748875686 28.332747881240632 30.690767502956124 21.046738866927566 31 26.086046615179864 27.386888181948617 26.088520356416637 20.43854484645488 32 25.844658945295684 28.232907684924523 26.792992385824473 19.129440983955316 33 24.676113059869486 27.57098400478916 26.053887979101837 21.69901495623952 34 20.30921765459646 28.10565843570499 28.57611454411423 23.009009365584323 35 19.905354660281116 28.33022466517912 28.910415934851553 22.85400473968821 36 25.494871934416174 27.13990985686933 26.35716865473004 21.008049553984456 37 20.773192560965352 31.510367449523308 27.28026993464376 20.43617005486758 38 20.9274055896657 31.231923135912293 24.93694433587469 22.90372693854732 39 20.699475072109557 29.971997249199745 27.057781647808515 22.270746030882187 40 23.426280037402964 26.930977672011597 25.886415697372396 23.756326593213043 41 18.87444773726889 26.200877683390804 27.57316089707752 27.35151368226278 42 22.08902499962894 27.062333331684172 25.753179994359872 25.09546167432702 43 21.616194099632402 27.133626554127932 26.494263394071925 24.75591595216774 44 20.13541259530088 30.10820144169639 27.40742023421382 22.348965728788905 45 19.096193901733102 32.41501461981071 24.63123939383445 23.85755208462174 46 22.095209352720868 30.254003750191714 26.61082608114861 21.03996081593881 47 21.10937399504262 28.482112377116902 27.699173275678675 22.709340352161803 48 21.6263859135279 26.776121470589693 29.0938191101458 22.503673505736607 49 21.081173344943426 25.952563538043666 29.357717825284602 23.6085452917283 50 19.74248353725207 30.095387462089917 28.019028017593246 22.143100983064766 51 19.457607496425446 30.591718903835783 26.15966515438619 23.79100844535258 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1250.0 1 2066.0 2 2882.0 3 8515.0 4 14148.0 5 10526.0 6 6904.0 7 6911.5 8 6919.0 9 7535.0 10 8151.0 11 8656.0 12 9161.0 13 9084.0 14 9007.0 15 8684.0 16 8361.0 17 8032.5 18 7704.0 19 7334.0 20 6964.0 21 6972.5 22 6981.0 23 7978.0 24 8975.0 25 11096.5 26 15618.5 27 18019.0 28 21077.0 29 24135.0 30 28889.5 31 33644.0 32 39022.5 33 44401.0 34 51645.5 35 58890.0 36 65722.5 37 72555.0 38 82875.5 39 93196.0 40 110320.0 41 127444.0 42 146915.5 43 166387.0 44 169198.0 45 172009.0 46 169795.0 47 167581.0 48 169149.5 49 170718.0 50 167260.0 51 163802.0 52 151552.0 53 139302.0 54 125661.0 55 112020.0 56 101751.5 57 91483.0 58 83603.5 59 75724.0 60 67524.5 61 59325.0 62 52459.5 63 45594.0 64 37192.0 65 28790.0 66 23882.0 67 18974.0 68 14635.0 69 10296.0 70 8242.5 71 6189.0 72 5291.5 73 4394.0 74 3409.5 75 2024.0 76 1623.0 77 1279.0 78 935.0 79 620.5 80 306.0 81 286.5 82 267.0 83 179.0 84 91.0 85 72.5 86 54.0 87 36.0 88 18.0 89 11.0 90 4.0 91 5.5 92 7.0 93 4.0 94 1.0 95 0.5 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2021230.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.320374129778283 #Duplication Level Percentage of deduplicated Percentage of total 1 77.5903753914152 15.766654568234987 2 8.712518165598816 3.5408325747491505 3 3.0275045347517597 1.8456007447726828 4 1.4762570858754123 1.199923851868984 5 0.8863630351413758 0.9005614244439284 6 0.6258689976200875 0.7630735312721695 7 0.4606005716175091 0.6551703157760264 8 0.35344070493874774 0.5745637885638343 9 0.2978601285870094 0.5447366326108707 >10 3.6220191257689076 18.24593352457951 >50 2.017700690550105 29.988986242109085 >100 0.9223245233831138 24.256349791950896 >500 0.005931347381030993 0.8535836592926197 >1k 9.88557896838499E-4 0.4387190002694785 >5k 2.4713947420962475E-4 0.42531034950574786 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8469 0.41900229068438527 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2706 0.1338788757340827 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCG 2305 0.11403947101517393 No Hit GAATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC 2185 0.10810249204692192 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.894964947086675E-5 0.0 0.0 0.05041484640540661 0.0 2 9.894964947086675E-5 0.0 0.0 0.18815275846885313 0.0 3 9.894964947086675E-5 0.0 0.0 0.2847770911771545 0.0 4 9.894964947086675E-5 0.0 0.0 0.4898007648807904 0.0 5 9.894964947086675E-5 0.0 0.0 0.953132498528124 0.0 6 9.894964947086675E-5 0.0 0.0 1.3420540957733658 0.0 7 9.894964947086675E-5 0.0 0.0 1.599521083696561 0.0 8 9.894964947086675E-5 0.0 0.0 2.1576960563617202 0.0 9 9.894964947086675E-5 0.0 0.0 2.3314516408325625 0.0 10 9.894964947086675E-5 0.0 0.0 2.7738555236168074 0.0 11 9.894964947086675E-5 0.0 0.0 3.1939462604453723 0.0 12 9.894964947086675E-5 0.0 0.0 3.617302335706476 0.0 13 1.4842447420630012E-4 0.0 0.0 3.7642920399954485 0.0 14 1.4842447420630012E-4 0.0 0.0 3.8260860960900045 0.0 15 1.4842447420630012E-4 0.0 0.0 3.9414613873730353 0.0 16 1.4842447420630012E-4 0.0 0.0 4.151234644251272 0.0 17 1.4842447420630012E-4 0.0 0.0 4.398460343454233 0.0 18 1.4842447420630012E-4 0.0 0.0 4.690213384919084 0.0 19 1.4842447420630012E-4 0.0 0.0 4.8667890343998454 0.0 20 1.4842447420630012E-4 0.0 0.0 5.053803871899784 0.0 21 1.4842447420630012E-4 0.0 0.0 5.295884189330259 0.0 22 1.4842447420630012E-4 0.0 0.0 5.571409488281888 0.0 23 1.4842447420630012E-4 0.0 0.0 5.861876184303617 0.0 24 1.4842447420630012E-4 0.0 0.0 6.0648713901931 0.0 25 1.4842447420630012E-4 0.0 0.0 6.248422989961558 0.0 26 1.4842447420630012E-4 0.0 0.0 6.427225006555414 0.0 27 1.4842447420630012E-4 0.0 0.0 6.614190369230617 0.0 28 1.4842447420630012E-4 0.0 0.0 6.803481048668385 0.0 29 1.4842447420630012E-4 0.0 0.0 7.017113341875986 0.0 30 1.4842447420630012E-4 0.0 0.0 7.289076453446664 0.0 31 1.4842447420630012E-4 0.0 0.0 7.524279770238914 0.0 32 1.4842447420630012E-4 0.0 0.0 7.743552193466354 0.0 33 1.4842447420630012E-4 0.0 0.0 7.970839538300935 0.0 34 1.4842447420630012E-4 0.0 0.0 8.20708182641263 0.0 35 1.4842447420630012E-4 0.0 0.0 8.49364001128026 0.0 36 1.4842447420630012E-4 0.0 0.0 8.741607832854251 0.0 37 1.4842447420630012E-4 0.0 0.0 8.990911474696102 0.0 38 1.4842447420630012E-4 0.0 0.0 9.264655679957254 0.0 39 1.4842447420630012E-4 0.0 0.0 9.649124542976306 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCCGC 30 2.1663218E-6 45.000004 36 CACGCTA 20 7.034559E-4 45.0 21 CTACGCG 25 3.8918595E-5 45.0 1 TTCGCGA 20 7.034559E-4 45.0 2 CGATACG 65 0.0 44.999996 10 CGGTCTA 555 0.0 43.783783 31 CGACGGT 560 0.0 43.39286 28 GCGATAT 160 0.0 42.1875 9 CGTTTTT 4510 0.0 41.757206 1 CGTGCGG 135 0.0 41.666664 2 TCGATAG 105 0.0 40.714287 1 GACGGTC 610 0.0 40.573772 29 TCGGTTA 50 1.0822987E-9 40.5 19 GGCGATA 605 0.0 40.16529 8 TAGTACG 85 0.0 39.705883 1 ACGGTCT 615 0.0 39.5122 30 TACGATG 80 0.0 39.375 1 AGCGATA 40 3.4599543E-7 39.375 12 GACCGAT 805 0.0 39.130436 9 TAAGGGA 2910 0.0 39.12371 4 >>END_MODULE