SRR1547951_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547951_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3491465
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48803	1.3977800149793855	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	14265	0.40856775021373554	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	5672	0.16245329682525816	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4161	0.11917633428947447	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCG	50	2.1827873E-11	45.0	1
CCGCGTA	20	7.0352654E-4	45.0	30
CCGCGAC	25	3.892445E-5	45.0	42
CGTTTTT	21765	0.0	43.407997	1
CGACGGT	350	0.0	43.071426	28
CGGTCTA	370	0.0	41.351353	31
TCGCGCG	50	1.0822987E-9	40.5	1
ACGGGAT	1745	0.0	40.487106	5
CGGTTTT	1665	0.0	39.72973	1
CGAGGGT	245	0.0	39.489796	4
CGAGACA	1285	0.0	39.39689	22
TTTCGCG	40	3.4609184E-7	39.375	1
TACCGCG	40	3.4609184E-7	39.375	1
GGGCGAT	4045	0.0	39.270706	7
TACGGGA	1625	0.0	39.184616	4
CACGACC	1295	0.0	38.918922	27
AGGGCGA	2050	0.0	38.743904	6
ACACGAC	1295	0.0	38.397686	26
GGCGATT	1195	0.0	38.22176	8
GCGAGAC	1310	0.0	38.129772	21