SRR1547949_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547949_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1111984
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18255	1.6416603116591606	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1616	0.14532583202636007	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1558	0.1401099296392754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	20	7.0331874E-4	45.0	1
ACGTTAC	20	7.0331874E-4	45.0	44
GCGCGTC	55	1.8189894E-12	45.0	38
CGTGATA	20	7.0331874E-4	45.0	17
GCTGCGA	25	3.890723E-5	45.0	9
GCGATAC	40	6.8139343E-9	45.0	9
ACGTCGA	20	7.0331874E-4	45.0	35
TCGCGCG	20	7.0331874E-4	45.0	1
AGTAACG	20	7.0331874E-4	45.0	1
AGTCGGC	105	0.0	45.0	30
CGTTTTT	6760	0.0	44.234467	1
CTACGGG	130	0.0	43.26923	3
ATTAGCG	80	0.0	42.1875	1
GCGCGAC	155	0.0	42.096775	9
ACGGGTA	65	0.0	41.53846	5
CGCATCG	120	0.0	41.250004	21
CGACGGT	420	0.0	41.25	28
TACGGGT	55	6.184564E-11	40.909092	4
CGTTCGG	55	6.184564E-11	40.909092	45
TAGGGCG	350	0.0	40.5	5