##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547946_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5730087 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.40027053690459 31.0 31.0 33.0 30.0 34.0 2 31.794630517826345 31.0 31.0 34.0 30.0 34.0 3 31.79415600496118 31.0 31.0 34.0 30.0 34.0 4 35.62459156379301 37.0 35.0 37.0 33.0 37.0 5 35.56685177729413 37.0 35.0 37.0 33.0 37.0 6 35.643274700715715 37.0 35.0 37.0 33.0 37.0 7 35.97977412908391 37.0 35.0 37.0 35.0 37.0 8 35.99758153759271 37.0 35.0 37.0 35.0 37.0 9 37.76751853854924 39.0 38.0 39.0 35.0 39.0 10 37.23693741473733 39.0 37.0 39.0 34.0 39.0 11 37.00608123401966 39.0 37.0 39.0 33.0 39.0 12 36.64798527491816 39.0 35.0 39.0 32.0 39.0 13 36.5507521962581 39.0 35.0 39.0 32.0 39.0 14 37.67988845544579 40.0 36.0 41.0 33.0 41.0 15 37.811849279077265 40.0 36.0 41.0 33.0 41.0 16 37.85706970941279 40.0 36.0 41.0 33.0 41.0 17 37.77770005935337 40.0 36.0 41.0 33.0 41.0 18 37.642840675892 39.0 36.0 41.0 33.0 41.0 19 37.56476629412433 39.0 36.0 41.0 33.0 41.0 20 37.401704022993016 39.0 35.0 41.0 32.0 41.0 21 37.290419150704 39.0 35.0 41.0 32.0 41.0 22 37.20823645435052 39.0 35.0 41.0 32.0 41.0 23 37.06119697659041 39.0 35.0 41.0 32.0 41.0 24 37.02575912023674 39.0 35.0 41.0 32.0 41.0 25 37.05016799919443 39.0 35.0 41.0 32.0 41.0 26 36.95264068416413 39.0 35.0 41.0 32.0 41.0 27 36.88737500844228 39.0 35.0 41.0 31.0 41.0 28 36.826909259841955 39.0 35.0 41.0 31.0 41.0 29 36.81315397130969 39.0 35.0 41.0 31.0 41.0 30 36.727948458723226 38.0 35.0 41.0 31.0 41.0 31 36.596382393495944 38.0 35.0 41.0 31.0 41.0 32 36.39494060037832 38.0 35.0 41.0 30.0 41.0 33 36.21792409085586 38.0 35.0 41.0 30.0 41.0 34 36.03019954147293 38.0 35.0 41.0 29.0 41.0 35 35.900892953283254 38.0 35.0 41.0 29.0 41.0 36 35.80550923572365 38.0 35.0 41.0 28.0 41.0 37 35.7089798113013 38.0 35.0 41.0 27.0 41.0 38 35.60892984696393 38.0 35.0 41.0 27.0 41.0 39 35.534641097072345 38.0 35.0 40.0 27.0 41.0 40 35.39947962395684 38.0 35.0 40.0 26.0 41.0 41 35.31253783755814 38.0 34.0 40.0 26.0 41.0 42 35.29742201121903 38.0 34.0 40.0 26.0 41.0 43 35.242812194649055 38.0 34.0 40.0 26.0 41.0 44 35.07400219228783 38.0 34.0 40.0 25.0 41.0 45 34.956394728387195 38.0 34.0 40.0 24.0 41.0 46 34.89245398891849 38.0 34.0 40.0 24.0 41.0 47 34.84566168018042 38.0 34.0 40.0 24.0 41.0 48 34.72954250083812 38.0 34.0 40.0 24.0 41.0 49 34.60020956051802 37.0 34.0 40.0 24.0 41.0 50 34.53538523935151 37.0 34.0 40.0 24.0 41.0 51 34.23478247363435 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 7.0 11 7.0 12 2.0 13 20.0 14 65.0 15 110.0 16 350.0 17 755.0 18 1804.0 19 3635.0 20 6640.0 21 11095.0 22 17447.0 23 27387.0 24 42536.0 25 65204.0 26 87726.0 27 98172.0 28 102857.0 29 112044.0 30 129138.0 31 155458.0 32 191584.0 33 248911.0 34 394206.0 35 557546.0 36 446173.0 37 558148.0 38 875736.0 39 1595038.0 40 283.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.80610940113126 25.83533199408665 30.12154963790253 14.23700896687956 2 32.637724348687904 26.396091368246243 28.037916352753456 12.928267930312401 3 27.73835720120829 24.987631077852747 33.46114989179048 13.812861829148492 4 25.227732144381054 27.233007107920002 32.740637271301466 14.798623476397479 5 23.290187391570143 31.462279717567988 31.234394870444376 14.01313802041749 6 21.778918889015124 39.96195869277378 27.96343231786882 10.29569010034228 7 87.72081471014315 2.9465870238968446 7.9398968985985725 1.392701367361438 8 88.28644312032262 2.4119529075212993 7.703303632213612 1.5983003399424827 9 83.1261898815847 5.7134734603506026 8.934593837754994 2.225742820309709 10 34.64160317286631 41.76889460840647 14.24062147747495 9.34888074125227 11 29.150552164391218 25.088135660069383 29.571191501978937 16.190120673560454 12 28.5184500689082 23.22938552241877 30.15828555482665 18.093878853846373 13 23.114465801304586 29.609114137359523 30.287829835742457 16.988590225593434 14 17.740707950856592 32.33561724280975 31.419592756619576 18.50408204971408 15 16.721264441534657 28.299762289822127 37.86204293233244 17.116930336310777 16 20.76671785262597 27.203339146508597 35.46618053094133 16.563762469924104 17 20.44876456500573 26.32668579028556 30.605486443748585 22.619063200960124 18 21.24416261044553 26.719541954598597 33.18399877698192 18.852296657973955 19 23.043856053145443 27.702354257448448 30.117727706403063 19.13606198300305 20 24.58978371532579 27.86596433876135 29.83230446588333 17.711947480029536 21 22.560477703043603 28.08278478145271 31.855258044075075 17.50147947142862 22 23.04205852371875 24.87442162745522 30.8182929857784 21.26522686304763 23 19.04946643916576 28.947378983949108 31.36912231873617 20.63403225814896 24 18.640572123948555 27.717100979444115 35.20033814495312 18.441988751654208 25 19.014231372054212 29.639392909741165 32.28247668839932 19.063899029805306 26 18.831616343696002 31.828382361384737 29.786999743633906 19.553001551285348 27 18.461517250959712 31.313311647798713 31.514216101779958 18.710954999461613 28 16.99593740897826 30.16277065252238 34.27750747938033 18.56378445911903 29 18.158572461465244 27.87713345364564 33.65388693051257 20.310407154376538 30 19.088558341260786 29.895217995817514 32.21633458619389 18.799889076727805 31 22.73199342348554 29.809250714692464 29.120919106463827 18.337836755358165 32 22.622797873749562 29.309904020654486 30.074185610096322 17.993112495499634 33 21.815584998971218 29.84057659159451 28.90675132855749 19.437087080876783 34 19.61615940560763 29.853525784163487 30.58494574340669 19.945369066822195 35 19.40900722798799 29.86664949415253 30.622781120077235 20.101562157782247 36 22.630127605392378 29.57506578870443 29.14313517403837 18.651671431864823 37 19.803817987405775 31.007923614423305 29.977747283767243 19.210511114403673 38 19.930168599534355 31.37861606638782 28.410790272468812 20.280425061609012 39 19.997933713746406 30.03413386219092 29.549376824470553 20.418555599592118 40 21.42735354628996 29.07886040822766 29.028372518602247 20.465413526880134 41 18.218763519646387 29.087132533938835 29.99537354319402 22.698730403220754 42 20.321680979712873 29.297775059959825 28.63101380485148 21.749530155475824 43 20.376130414773808 29.155979656155306 29.249852576409396 21.218037352661486 44 19.970743899699954 30.41892732169686 28.77027870606502 20.840050072538165 45 19.581971443016485 32.05426025817758 27.31246488927655 21.051303409529385 46 21.11517678527394 31.101081013255122 28.103814130570793 19.679928070900147 47 20.01194746257779 29.887591584560585 29.47943024250766 20.62103071035396 48 20.35379218500522 29.204059205383793 30.283606514176835 20.158542095434154 49 20.80019029379484 28.38953405070464 30.237813143151232 20.572462512349286 50 19.301295076322575 30.414651644905216 29.689060567492255 20.59499271127995 51 18.904826401414148 30.18243876576394 28.750732755017506 22.162002077804406 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3449.0 1 5812.5 2 8176.0 3 48417.0 4 88658.0 5 63787.5 6 38917.0 7 36969.5 8 35022.0 9 37690.0 10 40358.0 11 43380.0 12 46402.0 13 47034.0 14 47666.0 15 44766.0 16 41866.0 17 38876.0 18 35886.0 19 34918.5 20 33951.0 21 35096.5 22 36242.0 23 39024.0 24 41806.0 25 47651.0 26 64140.5 27 74785.0 28 91106.0 29 107427.0 30 125489.0 31 143551.0 32 164063.0 33 184575.0 34 206081.5 35 227588.0 36 241626.0 37 255664.0 38 271868.0 39 288072.0 40 327805.0 41 367538.0 42 400232.0 43 432926.0 44 440399.5 45 447873.0 46 469704.5 47 491536.0 48 469668.5 49 447801.0 50 424216.5 51 400632.0 52 369575.0 53 338518.0 54 302906.0 55 267294.0 56 237672.0 57 208050.0 58 185989.0 59 163928.0 60 142174.5 61 120421.0 62 101114.5 63 81808.0 64 68256.5 65 54705.0 66 43084.5 67 31464.0 68 24602.5 69 17741.0 70 13755.0 71 9769.0 72 8107.0 73 6445.0 74 4905.5 75 3117.5 76 2869.0 77 1936.5 78 1004.0 79 688.0 80 372.0 81 320.0 82 268.0 83 179.0 84 90.0 85 67.0 86 44.0 87 37.0 88 30.0 89 23.5 90 17.0 91 14.0 92 11.0 93 9.0 94 7.0 95 4.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 5730087.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.68467226603524 #Duplication Level Percentage of deduplicated Percentage of total 1 75.67481723315903 14.13959158793692 2 9.616642843469627 3.5936763965948644 3 3.4970067629983252 1.960212758361974 4 1.8419511921746072 1.3766501742326172 5 1.1360078424862414 1.0612967114250602 6 0.8210073332748736 0.9204151770151551 7 0.5588755081995109 0.7309683995755226 8 0.46445941354160797 0.69426175383199 9 0.3449901965706055 0.5801425882125154 >10 3.2083989653349514 13.988035247783042 >50 1.453377685280559 19.95753445386391 >100 1.3714982603441033 38.06562437245535 >500 0.008678047375433583 1.073142364316579 >1k 0.0020979894745442626 0.7191106899801566 >5k 9.53631579338301E-5 0.09744824727443074 >10k+ 9.53631579338301E-5 1.0418890771398408 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 58473 1.0204557103583245 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.490348401341899E-5 0.0 0.0 0.0349209357554257 0.0 2 3.490348401341899E-5 0.0 0.0 0.15978814981343215 0.0 3 3.490348401341899E-5 0.0 0.0 0.26910586174346046 0.0 4 3.490348401341899E-5 0.0 0.0 0.42091856545982637 0.0 5 3.490348401341899E-5 0.0 0.0 0.789796036255645 0.0 6 3.490348401341899E-5 0.0 0.0 1.217293908452001 0.0 7 3.490348401341899E-5 0.0 0.0 1.4962949079132655 0.0 8 3.490348401341899E-5 0.0 0.0 2.0054145774750016 0.0 9 3.490348401341899E-5 0.0 0.0 2.2217638231321795 0.0 10 3.490348401341899E-5 0.0 0.0 2.5843761185475893 0.0 11 3.490348401341899E-5 0.0 0.0 3.0675974029713684 0.0 12 3.490348401341899E-5 0.0 0.0 3.407330464615982 0.0 13 3.490348401341899E-5 0.0 0.0 3.548113667384108 0.0 14 3.490348401341899E-5 0.0 0.0 3.6022489710889207 0.0 15 3.490348401341899E-5 0.0 0.0 3.688320962666012 0.0 16 3.490348401341899E-5 0.0 0.0 3.8999931414653912 0.0 17 3.490348401341899E-5 0.0 0.0 4.177126804531938 0.0 18 3.490348401341899E-5 0.0 0.0 4.5312051981060675 0.0 19 3.490348401341899E-5 0.0 0.0 4.709753970576712 0.0 20 3.490348401341899E-5 0.0 0.0 4.8961385752083695 0.0 21 3.490348401341899E-5 0.0 0.0 5.139223889619826 0.0 22 3.490348401341899E-5 0.0 0.0 5.424315547041433 0.0 23 3.490348401341899E-5 0.0 0.0 5.71523608629328 0.0 24 3.490348401341899E-5 0.0 0.0 5.9280600800651015 0.0 25 3.490348401341899E-5 0.0 0.0 6.109942135259028 0.0 26 3.490348401341899E-5 0.0 0.0 6.295646121952424 0.0 27 3.490348401341899E-5 0.0 0.0 6.493269648436402 0.0 28 3.490348401341899E-5 0.0 0.0 6.70267310077491 0.0 29 3.490348401341899E-5 0.0 0.0 6.940138954260206 0.0 30 3.490348401341899E-5 0.0 0.0 7.22954119195747 0.0 31 3.490348401341899E-5 0.0 0.0 7.488594850305065 0.0 32 3.490348401341899E-5 0.0 0.0 7.722744872809087 0.0 33 3.490348401341899E-5 0.0 0.0 7.966650419094859 0.0 34 3.490348401341899E-5 0.0 0.0 8.22158546632887 0.0 35 3.490348401341899E-5 0.0 0.0 8.519486702383402 0.0 36 3.490348401341899E-5 0.0 0.0 8.780302986673675 0.0 37 3.490348401341899E-5 0.0 0.0 9.043527611360874 0.0 38 3.490348401341899E-5 0.0 0.0 9.328898496654588 0.0 39 3.490348401341899E-5 0.0 0.0 9.633605912091737 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCGC 35 1.2130658E-7 45.0 42 CCGCGTA 20 7.035644E-4 45.0 12 CGTTTTT 28465 0.0 42.952747 1 CGACGGT 850 0.0 39.441177 28 TACGGGA 2890 0.0 39.394463 4 CGGTCTA 840 0.0 39.375004 31 CGAGGGC 865 0.0 39.017338 4 TAGGGCG 1460 0.0 38.989727 5 CGAGGGA 5215 0.0 38.744007 4 TTAGGGA 9920 0.0 38.73992 4 CGTTAGG 775 0.0 38.612904 2 GACCGAT 2590 0.0 38.571426 9 TAACGGG 1670 0.0 38.263474 3 GGGCGAT 7995 0.0 38.24578 7 AGGGCGA 3960 0.0 38.18182 6 TAAGGGA 8875 0.0 38.078876 4 TAGGGAT 10485 0.0 38.025753 5 ACGGGAT 3125 0.0 37.944 5 TCGATAG 340 0.0 37.72059 1 AAGGGAT 11215 0.0 37.657154 5 >>END_MODULE