SRR1547944_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547944_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2803573
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9812	0.3499819694368579	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3844	0.1371107511735917	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	35	1.2127566E-7	45.000004	8
GTCGGTA	20	7.035026E-4	45.0	20
GTACGTA	25	3.8922473E-5	45.0	38
CGGTCTA	730	0.0	42.84247	31
TTTCGCG	100	0.0	42.75	1
CGACGGT	730	0.0	42.53425	28
CTCACGA	800	0.0	41.0625	24
ACGGGTA	105	0.0	40.714287	5
TACGACG	50	1.0822987E-9	40.5	1
GCGATAA	150	0.0	40.5	9
TCACGAC	795	0.0	40.4717	25
CACGACG	770	0.0	40.324673	26
GACGGTC	770	0.0	40.324673	29
TACGGGA	1430	0.0	40.27972	4
CGTTTTT	6275	0.0	39.729084	1
CACGACC	410	0.0	39.512196	27
CGTACTC	40	3.460591E-7	39.375	45
TTAGGGA	4420	0.0	38.99321	4
ACGGGAT	1340	0.0	38.955223	5
CACAACG	1265	0.0	38.774704	12