##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547943_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3823893 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.303143681060114 31.0 31.0 33.0 30.0 34.0 2 31.69487299984597 31.0 31.0 34.0 30.0 34.0 3 31.802202624393516 31.0 31.0 34.0 30.0 34.0 4 35.600463977417775 37.0 35.0 37.0 33.0 37.0 5 35.50191310269403 37.0 35.0 37.0 33.0 37.0 6 35.552423145731325 37.0 35.0 37.0 33.0 37.0 7 35.89047653791568 37.0 35.0 37.0 35.0 37.0 8 35.89977857644029 37.0 35.0 37.0 35.0 37.0 9 37.67797765261737 39.0 37.0 39.0 35.0 39.0 10 37.079699405814964 39.0 37.0 39.0 33.0 39.0 11 36.846594033881175 39.0 37.0 39.0 32.0 39.0 12 36.31332179012331 38.0 35.0 39.0 32.0 39.0 13 36.10123321965337 38.0 35.0 39.0 32.0 39.0 14 36.96802081020572 39.0 35.0 41.0 31.0 41.0 15 37.19560223050174 39.0 35.0 41.0 31.0 41.0 16 37.308158465731125 39.0 35.0 41.0 32.0 41.0 17 37.263064369217446 39.0 35.0 41.0 32.0 41.0 18 37.18387256128767 39.0 35.0 41.0 32.0 41.0 19 37.1358570964198 39.0 35.0 41.0 32.0 41.0 20 36.97419671523236 39.0 35.0 41.0 31.0 41.0 21 36.88088238870701 39.0 35.0 41.0 31.0 41.0 22 36.8403953771719 39.0 35.0 41.0 31.0 41.0 23 36.713967153369616 38.0 35.0 41.0 31.0 41.0 24 36.66789211936631 38.0 35.0 40.0 31.0 41.0 25 36.67729065640697 38.0 35.0 41.0 31.0 41.0 26 36.589120563781464 38.0 35.0 41.0 31.0 41.0 27 36.52643287874425 38.0 35.0 40.0 31.0 41.0 28 36.47374782714893 38.0 35.0 40.0 31.0 41.0 29 36.43869585262977 38.0 35.0 40.0 30.0 41.0 30 36.33930107353945 38.0 35.0 40.0 30.0 41.0 31 36.187107222927004 38.0 35.0 40.0 30.0 41.0 32 36.08770721356481 38.0 35.0 40.0 30.0 41.0 33 35.967484445825235 38.0 35.0 40.0 30.0 41.0 34 35.78916329510266 38.0 35.0 40.0 29.0 41.0 35 35.74365731467905 38.0 34.0 40.0 29.0 41.0 36 35.66021094209488 38.0 34.0 40.0 28.0 41.0 37 35.565509547469034 38.0 34.0 40.0 27.0 41.0 38 35.428438243434115 38.0 34.0 40.0 27.0 41.0 39 35.364862719746604 38.0 34.0 40.0 27.0 41.0 40 35.19981207633163 38.0 34.0 40.0 26.0 41.0 41 35.08227845287512 38.0 34.0 40.0 25.0 41.0 42 35.089057669762205 38.0 34.0 40.0 26.0 41.0 43 35.03811168356437 38.0 34.0 40.0 25.0 41.0 44 34.91410925985638 38.0 34.0 40.0 25.0 41.0 45 34.81643340961685 37.0 34.0 40.0 25.0 41.0 46 34.7669566067879 37.0 34.0 40.0 24.0 41.0 47 34.68411119244184 37.0 34.0 40.0 24.0 41.0 48 34.53987676956442 37.0 33.0 40.0 24.0 41.0 49 34.396027556210385 37.0 33.0 40.0 24.0 41.0 50 34.30750415871992 36.0 33.0 40.0 24.0 41.0 51 33.99679750453269 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 1.0 12 7.0 13 17.0 14 43.0 15 116.0 16 309.0 17 779.0 18 1780.0 19 3396.0 20 5715.0 21 9416.0 22 14152.0 23 20759.0 24 30148.0 25 43148.0 26 56361.0 27 66160.0 28 72951.0 29 82154.0 30 97641.0 31 118719.0 32 147106.0 33 188084.0 34 301660.0 35 387204.0 36 285657.0 37 369425.0 38 571704.0 39 949133.0 40 145.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.298602497507126 24.63973233560667 30.150085266507197 12.91157990037901 2 30.69497499014748 25.752420373687237 30.26936161655151 13.28324301961378 3 28.700750779375888 25.60150087881643 31.88598634951344 13.811761992294242 4 26.214854861263113 27.43311593708297 31.369444699420196 14.982584502233717 5 23.188018074773538 32.3895307740044 30.289602768696717 14.132848382525347 6 21.514958708311138 41.276442620125614 26.707284958025763 10.501313713537487 7 89.58446274516572 3.01757920527588 5.86480845567593 1.5331495938824649 8 90.44818984213208 2.2914082585469835 5.520604263769933 1.7397976355509948 9 85.74447559071345 4.911068379789916 7.00118962533732 2.3432664041593214 10 39.72522243692488 35.086415859439576 13.460235419767239 11.728126283868297 11 35.38679037305699 22.920803484825544 25.050674796601264 16.641731345516206 12 34.081236059691 21.985290906413958 26.276650523432533 17.656822510462504 13 27.04089784939066 26.515543191192847 28.182404685486755 18.261154273929737 14 19.748565140290275 30.940954676294552 29.908315949217197 19.402164234197976 15 19.033273159055444 26.58711946176318 37.00838386429746 17.371223514883916 16 24.389777642836762 24.260066900407516 33.757717593039345 17.592437863716377 17 24.043899763931677 23.792768259990538 27.546011355443262 24.61732062063452 18 24.20541055934358 26.25473568428824 30.646987245720524 18.892866510647657 19 26.228244357255814 27.056301000054134 26.85985198853629 19.855602654153763 20 26.166108727414706 28.873114388922495 26.007474581532485 18.953302302130314 21 24.20038949834632 26.96568653986919 30.721466317179903 18.112457644604596 22 23.33577325516169 23.50583554508455 30.58453779956709 22.573853400186668 23 21.604160995090606 27.09592030948565 29.943044954448254 21.356873740975495 24 22.17271769895235 26.818454386668243 31.977751469510263 19.031076444869143 25 22.4227769971597 26.3195649041435 29.97382510441584 21.28383299428096 26 20.14823636540039 29.337222563497463 27.15575461970301 23.358786451399137 27 19.583759273598922 29.281180200387407 30.682788456685373 20.452272069328302 28 18.307049909607827 28.92588783211246 31.60067501888782 21.1663872393919 29 20.330223675191746 27.595620484150572 30.53260119987667 21.541554640781005 30 22.12789426900805 27.357852324842774 30.42658358902825 20.08766981712093 31 24.46757793693495 26.674491153387397 28.321399160489065 20.536531749188587 32 26.37003702770972 26.44485606684078 27.50898103058846 19.67612587486104 33 25.484604302473947 26.69332013212713 27.098090872312586 20.72398469308634 34 20.147634884135098 27.981536094236947 30.18104847599031 21.689780545637653 35 20.4281605159977 28.011348643908185 29.062476382053575 22.498014458040537 36 24.91141880800535 27.530843567014035 27.87039281695382 19.687344808026793 37 21.459988550934874 30.476872653078946 28.093490063660255 19.969648732325933 38 21.84470119849065 29.788098150235896 26.803521960473265 21.563678690800188 39 20.895380702336595 27.97871174742599 28.02934077914837 23.096566771089044 40 22.702230423288515 25.904621285166712 28.8251527958549 22.567995495689864 41 20.027940112341007 25.8322343224562 28.677789885857162 25.46203567934563 42 21.32086331913576 27.295324424611255 27.962942477731463 23.42086977852152 43 21.238277326274556 26.590153019449026 28.480164063168083 23.691405591108328 44 21.472802717021633 27.94963143581685 27.614815581921352 22.96275026524016 45 20.646838182972168 29.383641226362766 26.153111501812422 23.816409088852645 46 21.84132767313311 28.468945130002332 27.467818790954663 22.221908405909893 47 20.80790440527494 28.101518530984 28.63492780786492 22.455649255876146 48 20.986936611458532 27.772926700616363 29.414918252158206 21.8252184357669 49 22.46548216699578 25.16995114664558 29.403097837727156 22.961468848631487 50 20.51035423846849 27.88642360024195 28.762363382029783 22.840858779259776 51 19.470314676692052 28.449148550966253 28.04283488057851 24.037701891763184 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2195.0 1 3950.5 2 5706.0 3 20380.0 4 35054.0 5 25094.5 6 15135.0 7 14352.0 8 13569.0 9 14465.0 10 15361.0 11 16391.0 12 17421.0 13 17327.5 14 17234.0 15 16524.5 16 15815.0 17 14662.5 18 13510.0 19 13626.0 20 13742.0 21 14209.0 22 14676.0 23 16736.0 24 18796.0 25 22596.0 26 32487.5 27 38579.0 28 44148.0 29 49717.0 30 59385.0 31 69053.0 32 79252.5 33 89452.0 34 97187.5 35 104923.0 36 118874.5 37 132826.0 38 143988.0 39 155150.0 40 179359.0 41 203568.0 42 230726.5 43 257885.0 44 276226.0 45 294567.0 46 305548.5 47 316530.0 48 328220.5 49 339911.0 50 321848.5 51 303786.0 52 285169.5 53 266553.0 54 249556.0 55 232559.0 56 219496.0 57 206433.0 58 191799.5 59 177166.0 60 155751.0 61 134336.0 62 114200.5 63 94065.0 64 77557.0 65 61049.0 66 47052.0 67 33055.0 68 25149.5 69 17244.0 70 13264.5 71 9285.0 72 7523.0 73 5761.0 74 4403.5 75 2245.0 76 1444.0 77 1084.0 78 724.0 79 508.0 80 292.0 81 227.5 82 163.0 83 120.5 84 78.0 85 63.5 86 49.0 87 31.0 88 13.0 89 11.0 90 9.0 91 6.0 92 3.0 93 3.5 94 4.0 95 4.0 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3823893.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.590430420708024 #Duplication Level Percentage of deduplicated Percentage of total 1 76.02700500348905 15.654287566191622 2 9.595279267878528 3.9514186026503015 3 3.4787220333682916 2.1488515194316125 4 1.727349562701401 1.4226748393217452 5 1.0250401094439798 1.0553008525970604 6 0.6825897025258926 0.8432889465450708 7 0.49272277200806064 0.7101761767611249 8 0.3881070613928123 0.6393033154715327 9 0.3097974797994044 0.5740977107088303 >10 3.496974975671304 17.715207602528686 >50 1.8184049194193954 27.3407565983093 >100 0.9506234290729354 25.892294546504807 >500 0.004922455485971408 0.6472880842829648 >1k 0.002331689440723292 0.8162583337445 >5k 0.0 0.0 >10k+ 1.2953830226240513E-4 0.5887953049508164 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22075 0.5772912578882307 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4899 0.128115509508242 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.2302718721470503E-5 0.0 0.0 0.0591282235146224 0.0 2 5.2302718721470503E-5 0.0 0.0 0.19469687044067394 0.0 3 5.2302718721470503E-5 0.0 0.0 0.29974688099274743 0.0 4 5.2302718721470503E-5 0.0 0.0 0.4728165772420933 0.0 5 5.2302718721470503E-5 0.0 0.0 0.8634394320133958 0.0 6 5.2302718721470503E-5 0.0 0.0 1.2724728437746557 0.0 7 5.2302718721470503E-5 0.0 0.0 1.534431010491141 0.0 8 5.2302718721470503E-5 0.0 0.0 2.13549385403828 0.0 9 5.2302718721470503E-5 0.0 0.0 2.368188649630102 0.0 10 5.2302718721470503E-5 0.0 0.0 2.7970447917867993 0.0 11 5.2302718721470503E-5 0.0 0.0 3.329721830605616 0.0 12 5.2302718721470503E-5 0.0 0.0 3.7403243239285198 0.0 13 5.2302718721470503E-5 0.0 0.0 3.9150415558175924 0.0 14 5.2302718721470503E-5 0.0 0.0 3.9985951489751415 0.0 15 5.2302718721470503E-5 0.0 0.0 4.11128135646055 0.0 16 5.2302718721470503E-5 0.0 0.0 4.35493357162452 0.0 17 5.2302718721470503E-5 0.0 0.0 4.6465212284967174 0.0 18 5.2302718721470503E-5 0.0 0.0 5.014941579170756 0.0 19 5.2302718721470503E-5 0.0 0.0 5.22459702716577 0.0 20 5.2302718721470503E-5 0.0 0.0 5.468903026313759 0.0 21 5.2302718721470503E-5 0.0 0.0 5.779241207847605 0.0 22 5.2302718721470503E-5 0.0 0.0 6.123314642956799 0.0 23 5.2302718721470503E-5 0.0 0.0 6.469663246330376 0.0 24 5.2302718721470503E-5 0.0 0.0 6.737113198512615 0.0 25 5.2302718721470503E-5 0.0 0.0 6.9726846436341186 0.0 26 5.2302718721470503E-5 0.0 0.0 7.205222531069777 0.0 27 5.2302718721470503E-5 0.0 0.0 7.473692386267085 0.0 28 5.2302718721470503E-5 0.0 0.0 7.738474899794529 0.0 29 5.2302718721470503E-5 0.0 0.0 8.052683482513762 0.0 30 5.2302718721470503E-5 0.0 0.0 8.393200332749897 0.0 31 5.2302718721470503E-5 0.0 0.0 8.709317964702464 0.0 32 5.2302718721470503E-5 0.0 0.0 9.009143299773294 0.0 33 5.2302718721470503E-5 0.0 0.0 9.309622418828141 0.0 34 5.2302718721470503E-5 0.0 0.0 9.638789579101717 0.0 35 5.2302718721470503E-5 0.0 0.0 10.00208426334105 0.0 36 5.2302718721470503E-5 0.0 0.0 10.322438415510057 0.0 37 5.2302718721470503E-5 0.0 0.0 10.652259359767651 0.0 38 5.2302718721470503E-5 0.0 0.0 11.057788489374571 0.0 39 5.2302718721470503E-5 0.0 0.0 11.73707004876967 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCGA 20 7.035348E-4 45.0 29 TAATACG 30 2.166833E-6 44.999996 1 CGACGGT 905 0.0 43.01105 28 CGTTTTT 10695 0.0 41.92847 1 CGGTCTA 955 0.0 40.52356 31 ATAACGC 260 0.0 39.807693 11 CGCGTCA 165 0.0 39.545452 39 TCGTAAG 245 0.0 39.489796 1 CGCATCG 225 0.0 39.0 21 TAGTACG 185 0.0 38.91892 1 GCGCGAC 605 0.0 38.677685 9 TAACGCC 270 0.0 38.333336 12 GACCGAT 1580 0.0 38.30696 9 ATAGCGG 635 0.0 38.267715 2 TAAGGGA 4700 0.0 38.20213 4 TAGGGCG 1320 0.0 38.181816 5 CTCACGA 1055 0.0 38.175358 24 ACGGGAT 1865 0.0 38.123325 5 TCACGAC 1060 0.0 37.995285 25 TCGATAG 160 0.0 37.96875 1 >>END_MODULE