##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547939_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3648670 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.338757410234415 31.0 31.0 33.0 30.0 34.0 2 31.717113633186887 31.0 31.0 34.0 30.0 34.0 3 31.68409255975465 31.0 31.0 34.0 30.0 34.0 4 35.550430430814515 37.0 35.0 37.0 33.0 37.0 5 35.519362397805224 37.0 35.0 37.0 33.0 37.0 6 35.592403807414755 37.0 35.0 37.0 33.0 37.0 7 35.918302833635266 37.0 35.0 37.0 35.0 37.0 8 35.92791948847114 37.0 35.0 37.0 35.0 37.0 9 37.67433777239378 39.0 37.0 39.0 35.0 39.0 10 37.15095418330515 39.0 37.0 39.0 33.0 39.0 11 36.97116209468108 39.0 37.0 39.0 33.0 39.0 12 36.57195087525044 39.0 35.0 39.0 32.0 39.0 13 36.45989826429905 39.0 35.0 39.0 32.0 39.0 14 37.52236129877462 40.0 36.0 41.0 32.0 41.0 15 37.669352120087595 40.0 36.0 41.0 32.0 41.0 16 37.730752575596036 40.0 36.0 41.0 33.0 41.0 17 37.64919737877089 40.0 36.0 41.0 32.0 41.0 18 37.51447075235634 39.0 36.0 41.0 32.0 41.0 19 37.40778119150266 39.0 36.0 41.0 32.0 41.0 20 37.21836312957873 39.0 35.0 41.0 32.0 41.0 21 37.11191283399157 39.0 35.0 41.0 32.0 41.0 22 37.03519172739656 39.0 35.0 41.0 32.0 41.0 23 36.89209986104526 39.0 35.0 41.0 31.0 41.0 24 36.86301117941606 38.0 35.0 41.0 31.0 41.0 25 36.87583941545824 39.0 35.0 41.0 31.0 41.0 26 36.77691186103429 39.0 35.0 41.0 31.0 41.0 27 36.70435555969709 38.0 35.0 41.0 31.0 41.0 28 36.62967382635316 38.0 35.0 41.0 31.0 41.0 29 36.613428180679534 38.0 35.0 41.0 31.0 41.0 30 36.50937903400417 38.0 35.0 41.0 31.0 41.0 31 36.35724606500451 38.0 35.0 41.0 30.0 41.0 32 36.15287625353896 38.0 35.0 41.0 30.0 41.0 33 35.94822661408129 38.0 35.0 41.0 29.0 41.0 34 35.721542644306005 38.0 35.0 41.0 27.0 41.0 35 35.554645391334375 38.0 35.0 41.0 27.0 41.0 36 35.43938065103175 38.0 35.0 40.0 26.0 41.0 37 35.341286002844875 38.0 34.0 40.0 25.0 41.0 38 35.213635105394566 38.0 34.0 40.0 25.0 41.0 39 35.12126884590823 38.0 34.0 40.0 24.0 41.0 40 34.95629530760524 38.0 34.0 40.0 24.0 41.0 41 34.82150262972535 38.0 34.0 40.0 23.0 41.0 42 34.79717677948403 38.0 34.0 40.0 23.0 41.0 43 34.7274870021131 38.0 34.0 40.0 23.0 41.0 44 34.58855555586008 38.0 34.0 40.0 23.0 41.0 45 34.46333376271354 37.0 33.0 40.0 23.0 41.0 46 34.385488410845596 37.0 33.0 40.0 23.0 41.0 47 34.30886980735446 37.0 33.0 40.0 23.0 41.0 48 34.17310554256757 37.0 33.0 40.0 22.0 41.0 49 34.03684438439212 37.0 33.0 40.0 22.0 41.0 50 33.95216805027585 37.0 33.0 40.0 22.0 41.0 51 33.65667160910688 36.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 5.0 11 10.0 12 7.0 13 17.0 14 52.0 15 127.0 16 273.0 17 752.0 18 1650.0 19 3127.0 20 5368.0 21 9009.0 22 13495.0 23 20685.0 24 31978.0 25 48499.0 26 64533.0 27 72337.0 28 74660.0 29 79874.0 30 90077.0 31 106860.0 32 128830.0 33 163560.0 34 253266.0 35 336447.0 36 283870.0 37 358129.0 38 558085.0 39 942966.0 40 120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.180547980497 24.089298292254437 27.8766235367956 15.853530190452961 2 33.848224147429065 25.06754516029128 28.00845239498228 13.075778297297372 3 28.46152159554029 25.020815804114925 33.22695667188318 13.290705928461605 4 24.81326072240022 26.976953245977302 33.10343220954485 15.106353822077633 5 22.722005552708247 31.640625214119115 31.45962775477092 14.177741478401721 6 21.38962964587096 39.40690717439506 28.7089542216753 10.49450895805869 7 85.93906820841568 2.929999150375342 9.2564687954789 1.874463845730088 8 86.22215766292923 2.5085579128833246 9.343185325063654 1.9260990991237903 9 80.48773936804369 5.8441295047236395 10.95818476321509 2.709946364017574 10 33.14517344676279 40.09214316449556 16.38388782761938 10.378795561122272 11 31.689136041352057 24.094670112671192 28.109009584314283 16.107184261662468 12 29.115102215327777 21.924070962843995 30.68646931621659 18.274357505611633 13 24.371921823568588 26.350916909449197 31.646983695428744 17.63017757155347 14 19.22530675561232 29.54443673996278 32.28993030337082 18.940326201054084 15 17.588052632877186 26.883439719130532 37.713824489471506 17.814683158520776 16 22.713317455401558 25.49624931824473 35.1039419843395 16.686491242014213 17 21.73945574688859 25.23459233090414 30.78688946931348 22.239062452893794 18 22.571457544803998 25.629393724288573 32.83407378579044 18.96507494511699 19 23.45635532947622 27.997982826619015 29.81971512907443 18.725946714830336 20 25.33399841586112 27.324860839703234 29.522922051048738 17.818218693386907 21 23.37333877823974 27.455045263068463 31.499395670203118 17.67222028848868 22 23.174773273548993 23.797164446222872 31.67578871205124 21.352273568176898 23 19.408195315005194 28.52181753899366 31.617986828077083 20.452000317924064 24 19.67656707786673 27.18343944505806 34.168560050648594 18.971433426426614 25 20.74764229157474 28.298338846757858 31.517429638745075 19.436589222922326 26 20.287474614037443 29.435438118547307 29.377581420079096 20.89950584733615 27 19.71518388892391 28.364911049779785 31.715172926025097 20.204732135271207 28 17.797690665365735 28.366418448366115 33.3787105986565 20.45718028761165 29 19.02789235529659 27.299728394181987 32.591711500354926 21.080667750166498 30 20.25982070178997 27.07959338608315 32.63660457098066 20.02398134114623 31 22.897137861193258 27.251107937960956 30.109354915626792 19.742399285218998 32 22.564660547541983 27.99765393965472 29.659793842687883 19.77789167011541 33 22.294233241153627 27.7741478401719 29.431820361940105 20.499798556734373 34 19.287987129556797 28.94287507502734 31.414816905886255 20.35432088952961 35 19.65708052523248 28.861475551365288 30.91016726642859 20.571276656973637 36 22.24204984281944 29.4496624797529 29.053819610981535 19.25446806644613 37 20.30411081298117 30.730129060726235 28.888279838955018 20.07748028733758 38 19.907939057245517 31.190269331016506 28.548868491806605 20.352923119931372 39 20.305508582579407 29.027590875579325 28.651837518876743 22.015063022964533 40 22.49468984588905 27.492922078455983 29.273872397339307 20.73851567831566 41 19.48405857476834 27.53110037356078 29.21146609586507 23.773374955805814 42 20.98085055650415 27.62088651481225 28.835959404385708 22.562303524297896 43 20.55096788692866 27.625216859842077 28.96967936261706 22.854135890612195 44 20.664269446126944 28.606423710557543 29.025891626263817 21.703415217051695 45 19.831719503271056 29.44963507250587 27.89180715164704 22.826838272576033 46 21.051314588603518 28.355455549556414 28.826777976632584 21.766451885207484 47 20.564178179994354 28.51003242277323 29.692189208670555 21.23360018856186 48 20.042042716935214 28.477034097356025 30.1726382490058 21.30828493670296 49 21.0732129789759 26.76583522214944 30.104997163349935 22.055954635524724 50 19.24873995181806 28.77766418996511 30.343166139990736 21.630429718226093 51 19.232706712308868 28.59409044939663 29.231418571698732 22.941784266595775 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2268.0 1 3778.0 2 5288.0 3 36862.5 4 68437.0 5 48209.5 6 27982.0 7 26103.5 8 24225.0 9 25477.5 10 26730.0 11 27723.0 12 28716.0 13 28693.0 14 28670.0 15 27339.0 16 26008.0 17 24164.0 18 22320.0 19 21203.5 20 20087.0 21 20542.5 22 20998.0 23 22560.5 24 24123.0 25 27624.0 26 37166.0 27 43207.0 28 48468.5 29 53730.0 30 67197.0 31 80664.0 32 89085.5 33 97507.0 34 110253.5 35 123000.0 36 131934.0 37 140868.0 38 150080.0 39 159292.0 40 179530.5 41 199769.0 42 223531.5 43 247294.0 44 268249.0 45 289204.0 46 296354.0 47 303504.0 48 293029.0 49 282554.0 50 265325.0 51 248096.0 52 232784.0 53 217472.0 54 201330.0 55 185188.0 56 171239.5 57 157291.0 58 144128.5 59 130966.0 60 118902.5 61 106839.0 62 93871.5 63 80904.0 64 68331.0 65 55758.0 66 45684.0 67 35610.0 68 29122.0 69 22634.0 70 17516.0 71 12398.0 72 10049.5 73 7701.0 74 6254.0 75 3829.0 76 2851.0 77 2041.5 78 1232.0 79 978.5 80 725.0 81 498.5 82 272.0 83 231.0 84 190.0 85 131.0 86 72.0 87 57.0 88 42.0 89 30.5 90 19.0 91 20.5 92 22.0 93 14.0 94 6.0 95 5.0 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3648670.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.485500824461447 #Duplication Level Percentage of deduplicated Percentage of total 1 76.74854622270702 17.25729499366896 2 8.033258146373797 3.6126366534679932 3 3.046863885291225 2.0553078121421295 4 1.6286290412600823 1.4648215859998175 5 1.0624406540821276 1.194475510165252 6 0.7445866945612863 1.0045442840664496 7 0.5708501436407988 0.8985095962835381 8 0.4404569529931983 0.7923116143734671 9 0.3760888491004369 0.7610891513866768 >10 5.050938843697203 28.551867223608777 >50 2.0187105984863116 31.60124845536036 >100 0.27339872838349283 8.137691792937474 >500 0.0031138329898759832 0.49840256538814026 >1k 0.001992853113520417 0.8751731718258483 >5k 0.0 0.0 >10k+ 1.2455331959502607E-4 1.2946255893251517 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 46226 1.2669274009433575 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA 4190 0.11483636503164167 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3817 0.10461346189159337 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.481449404851631E-5 0.0 0.0 0.06690108998621415 0.0 2 5.481449404851631E-5 0.0 0.0 0.18280633765180188 0.0 3 5.481449404851631E-5 0.0 0.0 0.3057278405555997 0.0 4 5.481449404851631E-5 0.0 0.0 0.47315871262679277 0.0 5 5.481449404851631E-5 0.0 0.0 0.8971214168450422 0.0 6 5.481449404851631E-5 0.0 0.0 1.5327776970786615 0.0 7 5.481449404851631E-5 0.0 0.0 1.9533693099129272 0.0 8 5.481449404851631E-5 0.0 0.0 2.695091636130426 0.0 9 5.481449404851631E-5 0.0 0.0 3.0940589310625515 0.0 10 5.481449404851631E-5 0.0 0.0 3.650206787678798 0.0 11 5.481449404851631E-5 0.0 0.0 4.149484606719708 0.0 12 5.481449404851631E-5 0.0 0.0 4.543847484151759 0.0 13 5.481449404851631E-5 0.0 0.0 4.7461129671907845 0.0 14 5.481449404851631E-5 0.0 0.0 4.851110130540717 0.0 15 5.481449404851631E-5 0.0 0.0 4.976114584218359 0.0 16 5.481449404851631E-5 0.0 0.0 5.160839429161859 0.0 17 5.481449404851631E-5 0.0 0.0 5.381111473495822 0.0 18 5.481449404851631E-5 0.0 0.0 5.656472084348543 0.0 19 5.481449404851631E-5 0.0 0.0 5.823711105690567 0.0 20 5.481449404851631E-5 0.0 0.0 6.022797348074778 0.0 21 8.222174107277446E-5 0.0 0.0 6.257047088391112 0.0 22 8.222174107277446E-5 0.0 0.0 6.5102352364012095 0.0 23 8.222174107277446E-5 0.0 0.0 6.795133569218373 0.0 24 8.222174107277446E-5 0.0 0.0 7.009376019206999 0.0 25 8.222174107277446E-5 0.0 0.0 7.215533331323469 0.0 26 8.222174107277446E-5 0.0 0.0 7.400422619749114 0.0 27 8.222174107277446E-5 0.0 0.0 7.596494064960657 0.0 28 8.222174107277446E-5 0.0 0.0 7.812161691794544 0.0 29 8.222174107277446E-5 0.0 0.0 8.043889965384647 0.0 30 8.222174107277446E-5 0.0 0.0 8.33437937659476 0.0 31 8.222174107277446E-5 0.0 0.0 8.574521675021309 0.0 32 8.222174107277446E-5 0.0 0.0 8.82220096637953 0.0 33 8.222174107277446E-5 0.0 0.0 9.052778135594615 0.0 34 1.0962898809703262E-4 0.0 0.0 9.308926266283331 0.0 35 1.0962898809703262E-4 0.0 0.0 9.590590543951631 0.0 36 1.0962898809703262E-4 0.0 0.0 9.840791302036084 0.0 37 1.0962898809703262E-4 0.0 0.0 10.097980908111722 0.0 38 1.0962898809703262E-4 0.0 0.0 10.388854020780174 0.0 39 1.0962898809703262E-4 0.0 0.0 10.828356634061178 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 21150 0.0 42.648937 1 CGACGGT 550 0.0 42.136364 28 CGGTCTA 555 0.0 41.756756 31 GCGATAA 300 0.0 39.750004 9 CACGACC 900 0.0 39.0 27 CGTAAGG 670 0.0 38.619404 2 TAGGGAC 3960 0.0 38.579544 5 CCGTCGA 35 6.252025E-6 38.57143 20 TACGGGA 1570 0.0 38.407646 4 ACGGGAT 1620 0.0 38.333336 5 TAAGGGA 5835 0.0 38.290485 4 GCGCGAC 350 0.0 37.92857 9 TTAGGGA 5720 0.0 37.801575 4 CGGGTAT 245 0.0 37.65306 6 GGCGATA 970 0.0 37.57732 8 GGGCGAT 4785 0.0 37.52351 7 ATAGGGA 5545 0.0 37.49324 4 ACGGGAG 2190 0.0 37.39726 5 CACGACG 640 0.0 37.26563 26 TAGGGAT 6180 0.0 36.953884 5 >>END_MODULE