SRR1547938_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547938_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1614809
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7499	0.46438928690637715	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3728	0.23086321664048193	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	2127	0.1317183642152106	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1639	0.10149807190819471	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTC	20	7.0341356E-4	45.000004	17
CAGCGAC	20	7.0341356E-4	45.000004	22
GGTACGA	20	7.0341356E-4	45.000004	8
GTACCGG	20	7.0341356E-4	45.000004	2
CGTGATT	20	7.0341356E-4	45.000004	40
TTCGTCC	20	7.0341356E-4	45.000004	16
ACCTCGC	40	6.8175723E-9	45.000004	19
ATATCCG	40	6.8175723E-9	45.000004	1
TCGTCCA	20	7.0341356E-4	45.000004	17
ATACGGT	20	7.0341356E-4	45.000004	28
AGTCGTC	20	7.0341356E-4	45.000004	20
GTACGTC	20	7.0341356E-4	45.000004	9
TGCCGGT	20	7.0341356E-4	45.000004	29
AGGTCGT	20	7.0341356E-4	45.000004	21
TCACGGC	35	1.2123382E-7	45.0	18
TCTACGA	25	3.8915103E-5	45.0	12
CTAGTCG	35	1.2123382E-7	45.0	1
CGTAACA	25	3.8915103E-5	45.0	37
GACGATT	35	1.2123382E-7	45.0	9
ACTCGTT	30	2.1660508E-6	44.999996	30