##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547938_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1614809 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.317893942874978 31.0 31.0 33.0 30.0 34.0 2 31.70655786535745 31.0 31.0 34.0 30.0 34.0 3 31.820222701260644 31.0 31.0 34.0 30.0 34.0 4 35.59500101869633 37.0 35.0 37.0 33.0 37.0 5 35.479008353309894 37.0 35.0 37.0 33.0 37.0 6 35.53647583088774 37.0 35.0 37.0 33.0 37.0 7 35.89564276642005 37.0 35.0 37.0 35.0 37.0 8 35.90936946722491 37.0 35.0 37.0 35.0 37.0 9 37.68421280783053 39.0 37.0 39.0 35.0 39.0 10 37.11709744000684 39.0 37.0 39.0 33.0 39.0 11 36.83635030520637 39.0 37.0 39.0 32.0 39.0 12 36.02348884604928 37.0 35.0 39.0 32.0 39.0 13 35.690559069215 37.0 35.0 39.0 31.0 39.0 14 36.56719091855445 38.0 35.0 41.0 31.0 41.0 15 36.83500401595483 38.0 35.0 41.0 31.0 41.0 16 37.00775261965966 38.0 35.0 41.0 32.0 41.0 17 36.94954449721298 38.0 35.0 41.0 32.0 41.0 18 36.8969227939651 38.0 35.0 41.0 32.0 41.0 19 36.84086724807702 38.0 35.0 40.0 32.0 41.0 20 36.689899548491496 38.0 35.0 40.0 31.0 41.0 21 36.519340058174066 38.0 35.0 40.0 31.0 41.0 22 36.45568980603898 38.0 35.0 40.0 31.0 41.0 23 36.360347260883486 38.0 35.0 40.0 31.0 41.0 24 36.31358817048951 38.0 35.0 40.0 31.0 41.0 25 36.36603833642245 38.0 35.0 40.0 31.0 41.0 26 36.25510571219259 38.0 35.0 40.0 31.0 41.0 27 36.16663209085409 38.0 35.0 40.0 31.0 41.0 28 36.13574794294558 37.0 35.0 40.0 31.0 41.0 29 36.142384021887416 37.0 35.0 40.0 31.0 41.0 30 36.049930363281355 37.0 35.0 40.0 30.0 41.0 31 35.87988362710389 37.0 35.0 40.0 30.0 41.0 32 35.71880637276607 37.0 34.0 40.0 30.0 41.0 33 35.57556714137709 37.0 34.0 40.0 29.0 41.0 34 35.45622361530063 37.0 34.0 40.0 29.0 41.0 35 35.384550742533634 37.0 34.0 40.0 29.0 41.0 36 35.22755260838898 37.0 34.0 40.0 27.0 41.0 37 35.11575362782843 37.0 34.0 40.0 27.0 41.0 38 35.01311981788558 37.0 34.0 40.0 27.0 41.0 39 34.95197946010953 36.0 34.0 40.0 27.0 41.0 40 34.75168828016193 36.0 34.0 40.0 25.0 41.0 41 34.67914347764968 36.0 34.0 40.0 25.0 41.0 42 34.66275949663397 36.0 34.0 40.0 25.0 41.0 43 34.57290800336139 36.0 33.0 40.0 25.0 41.0 44 34.439526284532725 36.0 33.0 40.0 25.0 41.0 45 34.29752125483571 35.0 33.0 40.0 24.0 41.0 46 34.20031037726443 35.0 33.0 40.0 24.0 41.0 47 34.12171532360793 35.0 33.0 40.0 23.0 41.0 48 33.994004244464826 35.0 33.0 40.0 23.0 41.0 49 33.863590678526066 35.0 33.0 40.0 24.0 41.0 50 33.726866768763365 35.0 33.0 39.0 23.0 41.0 51 33.34470330546832 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 4.0 12 6.0 13 5.0 14 12.0 15 33.0 16 110.0 17 294.0 18 609.0 19 1294.0 20 2326.0 21 3772.0 22 6013.0 23 8845.0 24 13116.0 25 18428.0 26 23826.0 27 28390.0 28 31732.0 29 36711.0 30 43728.0 31 52823.0 32 66565.0 33 87288.0 34 155036.0 35 231854.0 36 114408.0 37 142575.0 38 212165.0 39 332772.0 40 67.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.53604605869796 25.53428919457348 29.55742753477346 12.372237211955097 2 29.478718535752524 27.226068222309884 30.519460815489634 12.775752426447958 3 29.246369075228092 25.903373092421454 31.64281348444305 13.2074443479074 4 26.40349415937117 27.904972043133274 30.4406279628117 15.250905834683854 5 23.36889378248449 32.03189974789588 30.326868378860905 14.272338090758721 6 21.235266833414972 41.403100924010204 26.356367842884204 11.005264399690613 7 88.76845496897775 3.4881524688059087 5.962562755099829 1.7808298071165074 8 89.20441984160355 2.546864675636561 5.6600501978871804 2.5886652848727003 9 84.86285374926695 4.848932598220594 7.437969444064282 2.850244208448182 10 45.55845304305339 31.303082903303114 12.322014554043234 10.816449499600262 11 40.4636709356958 22.296568820213412 21.36828566102864 15.871474583062145 12 37.34522163302285 22.494486964092967 23.988719408920808 16.171571993963376 13 23.44141009865563 37.52827733806289 24.235064332685784 14.795248230595693 14 16.616763964035375 40.883906393883116 26.02611206650446 16.473217575577053 15 14.113309995175898 27.47303241435984 42.95696890468161 15.456688685782652 16 18.095019287110738 23.045388030411026 41.601204848375254 17.25838783410298 17 17.610813415085 23.392673684627717 26.823605763901487 32.17290713638579 18 21.43213222121006 26.151823528355365 32.66528734977325 19.75075690066132 19 25.490940414624884 28.745504886336406 25.574603559925663 20.188951139113044 20 28.26470498987806 26.718515935940413 24.899043787841162 20.117735286340366 21 21.36710905128718 29.822350507087837 29.778754019825254 19.03178642179973 22 22.449837720745922 24.775747472301678 26.859399470773326 25.915015336179074 23 17.0306209588874 32.588869643406746 26.085376041377028 24.29513335632883 24 18.80302871732818 27.34273836720008 34.8410864690499 19.013146446421835 25 18.76358132757496 27.73306316722287 32.3322448661111 21.17111063909106 26 17.517118123567556 34.02934960109833 26.21938569824667 22.234146577087447 27 18.160661725318597 34.1593340141156 28.501575108882847 19.178429151682955 28 14.585378208816028 31.440312755254645 34.53473444847038 19.43957458745895 29 17.008265373799624 27.732381972109394 33.75365136062531 21.505701293465666 30 19.807296095079977 29.771384727233997 31.55784987574382 18.863469301942214 31 26.588717303408636 28.460146060617696 25.486110122002042 19.465026513971623 32 28.33381533048181 28.244950331587205 26.430370402939296 16.990863934991694 33 25.58946599876518 28.502008596682334 25.626745949520963 20.281779455031522 34 18.75881296178062 29.452585414126375 29.18592849061406 22.60267313347894 35 19.92724836188057 27.9255936770231 29.6975679476644 22.44959001343193 36 27.910483530869595 26.769481715794253 27.316543318745435 18.003491434590714 37 19.698242950095025 31.89188318866194 28.99463651738379 19.415237343859243 38 20.741400376143556 32.99374724812656 24.032377823011885 22.232474552718 39 19.739176583732192 29.952025285962613 28.449370792459046 21.85942733784615 40 23.313469270978796 26.483132060819575 27.509073828545667 22.69432483965596 41 17.997360678569414 25.468089414909134 28.686240911463834 27.848308995057618 42 22.49801679331735 27.454825926781435 25.58525497442732 24.4619023054739 43 21.491086561940143 27.260066051155274 27.06035202924928 24.188495357655302 44 20.122070164335224 29.672859143093707 27.470803048533917 22.73426764403716 45 19.62777021926432 32.69742737376371 24.35712211165531 23.31768029531666 46 22.633698474556432 29.844458384861618 26.81066305674541 20.711180083836542 47 21.32877634444693 28.91307888425195 27.384415122779227 22.373729648521902 48 21.669993169470818 27.306201538386272 29.23194012418806 21.79186516795485 49 21.665844071961452 24.19933255264245 30.709266544835952 23.425556830560147 50 20.212297553456786 29.655891192085253 28.3494208912633 21.782390363194658 51 18.099416091934092 30.68133754518336 26.093302675424773 25.125943687457774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1133.0 1 1744.5 2 2356.0 3 6502.5 4 10649.0 5 7579.0 6 4509.0 7 4743.5 8 4978.0 9 5891.5 10 6805.0 11 7726.0 12 8647.0 13 8723.0 14 8799.0 15 8363.0 16 7927.0 17 7725.0 18 7523.0 19 7487.5 20 7452.0 21 7094.5 22 6737.0 23 6835.5 24 6934.0 25 8112.5 26 12006.0 27 14721.0 28 16736.5 29 18752.0 30 21942.0 31 25132.0 32 30874.5 33 36617.0 34 38387.0 35 40157.0 36 43979.5 37 47802.0 38 56251.0 39 64700.0 40 83490.5 41 102281.0 42 125279.5 43 148278.0 44 151729.0 45 155180.0 46 158980.5 47 162781.0 48 166978.0 49 171175.0 50 157653.0 51 144131.0 52 124479.0 53 104827.0 54 93736.0 55 82645.0 56 71731.5 57 60818.0 58 53607.5 59 46397.0 60 40835.5 61 35274.0 62 30503.0 63 25732.0 64 20334.5 65 14937.0 66 11542.0 67 8147.0 68 6474.5 69 4802.0 70 3607.5 71 2413.0 72 2032.0 73 1651.0 74 1228.5 75 655.5 76 505.0 77 372.5 78 240.0 79 154.0 80 68.0 81 52.5 82 37.0 83 33.0 84 29.0 85 19.5 86 10.0 87 12.5 88 15.0 89 10.5 90 6.0 91 4.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1614809.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.823154563425543 #Duplication Level Percentage of deduplicated Percentage of total 1 75.66070760552175 17.26816024058969 2 9.96305841201115 4.547768441235352 3 3.7917476176233915 2.5961892582755777 4 1.9412484379388113 1.7722165258034357 5 1.1354101124535827 1.2956820244702247 6 0.7236977354469067 0.9910239163983481 7 0.5043473667341524 0.8057558533241157 8 0.38444131740261367 0.7019330886117432 9 0.3216486917107095 0.6606934025433422 >10 3.3210961562332075 17.762364689010752 >50 1.458632888464076 24.52633157434063 >100 0.7824090937859919 24.298639406443844 >500 0.008528369163865129 1.2860336447227516 >1k 0.0027510868270532673 1.016357123675773 >5k 2.751086827053267E-4 0.47085081055443384 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7499 0.46438928690637715 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3728 0.23086321664048193 No Hit CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT 2127 0.1317183642152106 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 1639 0.10149807190819471 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.238536569959667E-4 0.0 0.0 0.16862675400000868 0.0 2 1.238536569959667E-4 0.0 0.0 0.5428505786133221 0.0 3 1.238536569959667E-4 0.0 0.0 0.8241841604796605 0.0 4 1.238536569959667E-4 0.0 0.0 1.2994725692016826 0.0 5 1.238536569959667E-4 0.0 0.0 2.1855835581793266 0.0 6 1.238536569959667E-4 0.0 0.0 2.9808478897504287 0.0 7 1.238536569959667E-4 0.0 0.0 3.410620079526433 0.0 8 1.238536569959667E-4 0.0 0.0 4.39612362824334 0.0 9 1.238536569959667E-4 0.0 0.0 4.711888526754557 0.0 10 1.238536569959667E-4 0.0 0.0 5.396427688971265 0.0 11 1.238536569959667E-4 0.0 0.0 6.420821285984906 0.0 12 1.238536569959667E-4 0.0 0.0 7.2573908121641635 0.0 13 1.238536569959667E-4 0.0 0.0 7.563618979086691 0.0 14 1.238536569959667E-4 0.0 0.0 7.6767592947525065 0.0 15 1.238536569959667E-4 0.0 0.0 7.875792121545024 0.0 16 1.238536569959667E-4 0.0 0.0 8.310580384429366 0.0 17 1.238536569959667E-4 0.0 0.0 8.86965579210916 0.0 18 1.238536569959667E-4 0.0 0.0 9.503786515928509 0.0 19 1.8578048549395006E-4 0.0 0.0 9.842402414155481 0.0 20 1.8578048549395006E-4 0.0 0.0 10.190245409828655 0.0 21 1.8578048549395006E-4 0.0 0.0 10.642930526148913 0.0 22 1.8578048549395006E-4 0.0 0.0 11.132090544454483 0.0 23 1.8578048549395006E-4 0.0 0.0 11.638837782053482 0.0 24 1.8578048549395006E-4 0.0 0.0 11.994111997146412 0.0 25 1.8578048549395006E-4 0.0 0.0 12.279161188722629 0.0 26 1.8578048549395006E-4 0.0 0.0 12.556469526736599 0.0 27 1.8578048549395006E-4 0.0 0.0 12.828018669700256 0.0 28 1.8578048549395006E-4 0.0 0.0 13.124648178205597 0.0 29 1.8578048549395006E-4 0.0 0.0 13.474968247018687 0.0 30 1.8578048549395006E-4 0.0 0.0 13.863187534872546 0.0 31 1.8578048549395006E-4 0.0 0.0 14.215798896340063 0.0 32 1.8578048549395006E-4 0.0 0.0 14.503820575684182 0.0 33 1.8578048549395006E-4 0.0 0.0 14.817232254712478 0.0 34 1.8578048549395006E-4 0.0 0.0 15.142781592126376 0.0 35 1.8578048549395006E-4 0.0 0.0 15.54369587982232 0.0 36 1.8578048549395006E-4 0.0 0.0 15.874323217173053 0.0 37 1.8578048549395006E-4 0.0 0.0 16.19498033513561 0.0 38 1.8578048549395006E-4 0.0 0.0 16.539665062555386 0.0 39 1.8578048549395006E-4 0.0 0.0 17.01154749571002 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTC 20 7.0341356E-4 45.000004 17 CAGCGAC 20 7.0341356E-4 45.000004 22 GGTACGA 20 7.0341356E-4 45.000004 8 GTACCGG 20 7.0341356E-4 45.000004 2 CGTGATT 20 7.0341356E-4 45.000004 40 TTCGTCC 20 7.0341356E-4 45.000004 16 ACCTCGC 40 6.8175723E-9 45.000004 19 ATATCCG 40 6.8175723E-9 45.000004 1 TCGTCCA 20 7.0341356E-4 45.000004 17 ATACGGT 20 7.0341356E-4 45.000004 28 AGTCGTC 20 7.0341356E-4 45.000004 20 GTACGTC 20 7.0341356E-4 45.000004 9 TGCCGGT 20 7.0341356E-4 45.000004 29 AGGTCGT 20 7.0341356E-4 45.000004 21 TCACGGC 35 1.2123382E-7 45.0 18 TCTACGA 25 3.8915103E-5 45.0 12 CTAGTCG 35 1.2123382E-7 45.0 1 CGTAACA 25 3.8915103E-5 45.0 37 GACGATT 35 1.2123382E-7 45.0 9 ACTCGTT 30 2.1660508E-6 44.999996 30 >>END_MODULE