##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547933_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2590567 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.373774544337206 31.0 31.0 33.0 30.0 34.0 2 31.778035078807072 31.0 31.0 34.0 30.0 34.0 3 31.912319581002922 31.0 31.0 34.0 30.0 34.0 4 35.67916984968927 37.0 35.0 37.0 33.0 37.0 5 35.58302371642964 37.0 35.0 37.0 33.0 37.0 6 35.634605474400004 37.0 35.0 37.0 33.0 37.0 7 35.94100596510339 37.0 35.0 37.0 35.0 37.0 8 35.93954180687085 37.0 35.0 37.0 35.0 37.0 9 37.67927445999273 39.0 37.0 39.0 35.0 39.0 10 37.15915010111686 39.0 37.0 39.0 33.0 39.0 11 36.9784332927888 39.0 37.0 39.0 33.0 39.0 12 36.47759158516263 39.0 35.0 39.0 32.0 39.0 13 36.319538541176506 39.0 35.0 39.0 32.0 39.0 14 37.30468078995834 39.0 35.0 41.0 32.0 41.0 15 37.48373193976454 39.0 35.0 41.0 32.0 41.0 16 37.57226352377684 40.0 35.0 41.0 33.0 41.0 17 37.50302385539536 39.0 35.0 41.0 32.0 41.0 18 37.43359426720097 39.0 36.0 41.0 32.0 41.0 19 37.39160577587841 39.0 36.0 41.0 32.0 41.0 20 37.25921583962121 39.0 35.0 41.0 32.0 41.0 21 37.161861862673305 39.0 35.0 41.0 32.0 41.0 22 37.092966134440836 39.0 35.0 41.0 32.0 41.0 23 36.97103105227543 39.0 35.0 41.0 31.0 41.0 24 36.94736827883626 39.0 35.0 41.0 31.0 41.0 25 36.9814476907951 39.0 35.0 41.0 32.0 41.0 26 36.890698831568535 39.0 35.0 41.0 31.0 41.0 27 36.82883399657295 39.0 35.0 41.0 31.0 41.0 28 36.785028914519486 39.0 35.0 41.0 31.0 41.0 29 36.79140473880815 39.0 35.0 41.0 31.0 41.0 30 36.712667921732965 38.0 35.0 41.0 31.0 41.0 31 36.57633020107181 38.0 35.0 41.0 31.0 41.0 32 36.49121485759681 38.0 35.0 41.0 30.0 41.0 33 36.406143133916245 38.0 35.0 41.0 30.0 41.0 34 36.27775000607975 38.0 35.0 41.0 30.0 41.0 35 36.23640230111786 38.0 35.0 41.0 30.0 41.0 36 36.1619830716596 38.0 35.0 41.0 30.0 41.0 37 36.045657572261206 38.0 35.0 41.0 30.0 41.0 38 35.92953704729505 38.0 35.0 40.0 29.0 41.0 39 35.866286029274676 38.0 35.0 40.0 29.0 41.0 40 35.70856920511996 38.0 35.0 40.0 28.0 41.0 41 35.60309808624907 38.0 35.0 40.0 28.0 41.0 42 35.60021261754666 38.0 35.0 40.0 28.0 41.0 43 35.54459081737704 38.0 34.0 40.0 28.0 41.0 44 35.4253555302758 38.0 34.0 40.0 27.0 41.0 45 35.319605707939616 38.0 34.0 40.0 27.0 41.0 46 35.26022797325837 38.0 34.0 40.0 27.0 41.0 47 35.189755756172296 38.0 34.0 40.0 27.0 41.0 48 35.050079384165706 37.0 34.0 40.0 26.0 41.0 49 34.9217422286318 37.0 34.0 40.0 26.0 41.0 50 34.82688809052227 37.0 34.0 40.0 26.0 41.0 51 34.49692287441321 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 0.0 11 2.0 12 6.0 13 11.0 14 20.0 15 48.0 16 173.0 17 411.0 18 797.0 19 1682.0 20 2802.0 21 4690.0 22 7107.0 23 10785.0 24 15960.0 25 23173.0 26 30908.0 27 36916.0 28 42318.0 29 50174.0 30 60395.0 31 74287.0 32 92380.0 33 120847.0 34 194602.0 35 268602.0 36 195660.0 37 255855.0 38 399794.0 39 700029.0 40 130.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.78981010720819 24.599093557510766 30.208444714998684 12.402651620282356 2 30.20948695787447 25.85912659274977 30.456151105144162 13.47523534423159 3 29.217966568708704 25.51456881833205 31.603274495506195 13.664190117453051 4 26.43239877602085 27.920451391529344 30.287423564030576 15.35972626841923 5 23.282625000627274 32.990422560003275 29.246724751762837 14.480227687606611 6 22.314805986488672 41.352491558797745 25.634658358575557 10.698044096138027 7 89.443971146085 3.006330274414829 5.785413000320007 1.7642855791801564 8 89.13878699141925 2.5575482124183626 5.657101321834178 2.646563474328207 9 83.15832016697503 6.079634303995998 7.577916340322408 3.184129188706565 10 35.09054195471493 41.60158760611094 12.394892701095937 10.912977738078188 11 33.654138263939906 23.594603034779645 26.317211637452342 16.43404706382811 12 31.850710674535733 21.814992625166614 28.48851236042148 17.845784339876175 13 24.612488308544037 28.872289348239207 28.944358513020507 17.570863830196245 14 18.593381294519695 32.03622990642589 30.41851455685184 18.951874242202578 15 17.38638684118187 27.377327048480122 37.88259481418547 17.35369129615254 16 21.79009460091169 24.94284069858066 35.23456447951356 18.03250022099409 17 20.91414736619435 24.983372365972393 28.332793554461244 25.769686713372014 18 21.892852028146734 25.365142071214525 32.52315033735858 20.21885556328016 19 24.208484088618437 26.94977585987932 28.458055707495696 20.383684344006543 20 25.281878445915506 27.62677051008524 27.65062629146438 19.44072475253487 21 23.496439196515666 26.945182270908262 30.921377443625275 18.637001088950797 22 22.720470074697932 23.4698041008011 29.86442736281285 23.945298461688118 23 18.86864921849155 28.09751687564923 30.209293949934512 22.82453995592471 24 19.9592984856211 27.1165733215933 33.05125866267887 19.87286953010673 25 20.301462961583315 27.831088715327574 30.33501932202487 21.532429001064244 26 19.55764896256302 30.172583839754 27.964650209780327 22.305116987902647 27 19.35016542710534 30.077932745997305 30.033849732510298 20.53805209438706 28 17.462161758410417 28.497081912955736 33.72362112232573 20.31713520630812 29 18.602491269285835 25.959490721529306 33.40272612134718 22.035291887837683 30 21.083067915247895 27.42445958741851 31.54564232463395 19.946830172699645 31 23.359133348027672 28.02942367443112 27.988004170515566 20.623438807025643 32 23.567350313657204 27.61901159089883 29.402597964075046 19.411040131368924 33 24.2292517429582 26.58271335966219 28.347770970602188 20.840263926777418 34 19.009969632130726 28.31646508274057 30.74388734203748 21.92967794309122 35 19.11766806262876 27.388482907409845 30.55732586727153 22.936523162689866 36 24.535979961143642 25.91540770804229 29.16145384388823 20.387158486925834 37 20.098611616684686 30.22735949311483 29.033566782870313 20.640462107330173 38 20.262127943419337 29.492385257744736 27.62267874175808 22.622808057077854 39 19.52136346985042 27.888991097315763 29.25656815670083 23.333077276132986 40 21.671085905131964 26.040322446784813 29.554997033467963 22.733594614615257 41 18.619012748946467 26.041943713480485 29.092704415674252 26.2463391218988 42 20.988995845311084 26.320840186723604 28.564789098293925 24.12537486967139 43 21.089398575678604 25.675267229143273 29.753486398923478 23.481847796254645 44 20.32767343982997 27.894742733926588 29.040823881412837 22.736759944830613 45 19.28029655283959 28.932121809627002 28.076980830837417 23.710600806695986 46 21.58986816399653 27.953687358790564 28.939919330401416 21.51652514681149 47 20.34967634498548 27.405776418830317 29.843157887829193 22.401389348355014 48 20.37021238979729 26.816561779718494 30.337682831596325 22.47554299888789 49 21.24588941339869 24.581414030210375 30.874437912626853 23.298258643764086 50 19.852372086882912 27.290820889789764 30.591758483760508 22.26504853956682 51 18.90705779854372 27.911380018351196 28.672834943083892 24.5087272400212 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1884.0 1 3053.0 2 4222.0 3 10987.5 4 17753.0 5 12994.0 6 8235.0 7 8030.0 8 7825.0 9 8463.0 10 9101.0 11 9609.5 12 10118.0 13 10007.5 14 9897.0 15 9699.5 16 9502.0 17 9283.0 18 9064.0 19 9254.0 20 9444.0 21 10151.0 22 10858.0 23 12380.5 24 13903.0 25 17248.5 26 24914.5 27 29235.0 28 35988.5 29 42742.0 30 48759.5 31 54777.0 32 62186.5 33 69596.0 34 75924.5 35 82253.0 36 90632.0 37 99011.0 38 109978.5 39 120946.0 40 141270.0 41 161594.0 42 185487.5 43 209381.0 44 225867.5 45 242354.0 46 247019.5 47 251685.0 48 239809.0 49 227933.0 50 203704.5 51 179476.0 52 165413.5 53 151351.0 54 138510.0 55 125669.0 56 118128.0 57 110587.0 58 99200.5 59 87814.0 60 77410.0 61 67006.0 62 59106.5 63 51207.0 64 42609.5 65 34012.0 66 27249.5 67 20487.0 68 16362.0 69 12237.0 70 9748.5 71 7260.0 72 5813.0 73 4366.0 74 3384.0 75 1877.5 76 1353.0 77 965.0 78 577.0 79 511.5 80 446.0 81 345.0 82 244.0 83 150.5 84 57.0 85 58.0 86 59.0 87 38.5 88 18.0 89 18.5 90 19.0 91 11.5 92 4.0 93 4.5 94 5.0 95 4.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2590567.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.145376119373385 #Duplication Level Percentage of deduplicated Percentage of total 1 74.53426688384201 15.76055107040595 2 10.071788873959248 4.2594352786957685 3 3.5784053003853096 2.2700017795261997 4 1.7986258544941847 1.5213048076523552 5 1.0714248211306812 1.13278404132203 6 0.7129521328584942 0.9045384602641393 7 0.5188329272958412 0.7679642173550247 8 0.39609910754445904 0.6700531687660571 9 0.31641318784551486 0.6021608279511019 >10 4.2045593282049 22.779209105105664 >50 2.339761106459278 35.30030724848357 >100 0.4500100808579116 12.232209600381465 >500 0.004820818193966812 0.7022745020143685 >1k 0.0018541608438333895 0.6816516576608872 >5k 0.0 0.0 >10k+ 1.8541608438333895E-4 0.415554234415492 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10599 0.4091382311285522 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3473 0.13406331509665645 No Hit CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT 3094 0.1194333132476404 TruSeq Adapter, Index 10 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.860158799212682E-5 0.0 0.0 0.14267146921890073 0.0 2 3.860158799212682E-5 0.0 0.0 0.42164514563800126 0.0 3 3.860158799212682E-5 0.0 0.0 0.6335292621267854 0.0 4 3.860158799212682E-5 0.0 0.0 0.987698831954549 0.0 5 3.860158799212682E-5 0.0 0.0 1.643385405588815 0.0 6 3.860158799212682E-5 0.0 0.0 2.304476201541979 0.0 7 3.860158799212682E-5 0.0 0.0 2.67130709223116 0.0 8 3.860158799212682E-5 0.0 0.0 3.6058129359325584 0.0 9 3.860158799212682E-5 0.0 0.0 3.9071369317991005 0.0 10 3.860158799212682E-5 0.0 0.0 4.488592651724507 0.0 11 3.860158799212682E-5 0.0 0.0 5.242481665210743 0.0 12 3.860158799212682E-5 0.0 0.0 5.887745810087135 0.0 13 3.860158799212682E-5 0.0 0.0 6.1578797228560385 0.0 14 3.860158799212682E-5 0.0 0.0 6.26044414215112 0.0 15 3.860158799212682E-5 0.0 0.0 6.427859229272974 0.0 16 3.860158799212682E-5 0.0 0.0 6.766433757551918 0.0 17 3.860158799212682E-5 0.0 0.0 7.206762071778109 0.0 18 3.860158799212682E-5 0.0 0.0 7.733403536754695 0.0 19 3.860158799212682E-5 0.0 0.0 8.023571673691512 0.0 20 3.860158799212682E-5 0.0 0.0 8.345354511193882 0.0 21 3.860158799212682E-5 0.0 0.0 8.730945773647237 0.0 22 3.860158799212682E-5 0.0 0.0 9.163939786154923 0.0 23 3.860158799212682E-5 0.0 0.0 9.600176332053948 0.0 24 3.860158799212682E-5 0.0 0.0 9.920337902860648 0.0 25 3.860158799212682E-5 0.0 0.0 10.19282651249707 0.0 26 3.860158799212682E-5 0.0 0.0 10.452924012388022 0.0 27 3.860158799212682E-5 0.0 0.0 10.745022228724446 0.0 28 3.860158799212682E-5 0.0 0.0 11.03407091960949 0.0 29 3.860158799212682E-5 0.0 0.0 11.372105025656545 0.0 30 3.860158799212682E-5 0.0 0.0 11.763447924720728 0.0 31 3.860158799212682E-5 0.0 0.0 12.103296305403411 0.0 32 3.860158799212682E-5 0.0 0.0 12.4063573727296 0.0 33 3.860158799212682E-5 0.0 0.0 12.712853981387086 0.0 34 3.860158799212682E-5 0.0 0.0 13.03780214910481 0.0 35 3.860158799212682E-5 0.0 0.0 13.41042327799281 0.0 36 3.860158799212682E-5 0.0 0.0 13.740775668029432 0.0 37 3.860158799212682E-5 0.0 0.0 14.082438323347747 0.0 38 3.860158799212682E-5 0.0 0.0 14.456719320519408 0.0 39 3.860158799212682E-5 0.0 0.0 14.983669598199931 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGACT 20 7.0349267E-4 45.0 33 CCGTCGC 20 7.0349267E-4 45.0 44 CGTCAAT 20 7.0349267E-4 45.0 14 GCGATCG 30 2.166562E-6 44.999996 9 CGGTCTA 855 0.0 43.42105 31 CGACGGT 875 0.0 42.685715 28 CGTAAGG 330 0.0 40.90909 2 TAGGGTA 1365 0.0 40.54945 5 TAACGCG 45 1.9299478E-8 40.0 1 TACGGGA 1625 0.0 39.876926 4 CACGACG 940 0.0 39.734043 26 CGTTTTT 5575 0.0 39.430496 1 TCTCACG 980 0.0 39.030613 23 TTAGGGA 4680 0.0 38.894234 4 TCACGAC 980 0.0 38.80102 25 TAGGGAC 3485 0.0 38.73745 5 GACGTAG 105 0.0 38.57143 1 CGAGGGA 2105 0.0 38.47981 4 TAAGGGA 4345 0.0 38.475258 4 GTAGGGT 1480 0.0 38.462837 4 >>END_MODULE