##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547931_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1580438 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.357317401884792 31.0 31.0 33.0 30.0 34.0 2 31.723134979037457 31.0 31.0 34.0 30.0 34.0 3 31.63289353963901 31.0 31.0 34.0 30.0 34.0 4 35.52692291630548 37.0 35.0 37.0 33.0 37.0 5 35.51521223863258 37.0 35.0 37.0 33.0 37.0 6 35.60129154069948 37.0 35.0 37.0 33.0 37.0 7 35.92464114378419 37.0 35.0 37.0 35.0 37.0 8 35.94262413330988 37.0 35.0 37.0 35.0 37.0 9 37.70984246139361 39.0 37.0 39.0 35.0 39.0 10 37.16478533166122 39.0 37.0 39.0 33.0 39.0 11 36.994455967269836 39.0 37.0 39.0 33.0 39.0 12 36.52835036869526 39.0 35.0 39.0 32.0 39.0 13 36.360740503581916 39.0 35.0 39.0 32.0 39.0 14 37.4610842057708 40.0 35.0 41.0 32.0 41.0 15 37.628254319372225 40.0 35.0 41.0 33.0 41.0 16 37.718468551123166 40.0 35.0 41.0 33.0 41.0 17 37.66857795117556 40.0 35.0 41.0 33.0 41.0 18 37.52696847329664 39.0 36.0 41.0 33.0 41.0 19 37.38108233287228 39.0 36.0 41.0 32.0 41.0 20 37.15344923369344 39.0 35.0 41.0 32.0 41.0 21 37.035144055002476 39.0 35.0 41.0 32.0 41.0 22 36.94509243640054 38.0 35.0 41.0 32.0 41.0 23 36.79794462041535 38.0 35.0 41.0 32.0 41.0 24 36.68653373305375 38.0 35.0 41.0 31.0 41.0 25 36.62375430102288 38.0 35.0 40.0 31.0 41.0 26 36.48915047600728 38.0 35.0 40.0 31.0 41.0 27 36.3526946327537 38.0 35.0 40.0 31.0 41.0 28 36.24654557787145 38.0 35.0 40.0 31.0 41.0 29 36.194062658579455 38.0 35.0 40.0 31.0 41.0 30 36.07205027973258 37.0 35.0 40.0 30.0 41.0 31 35.90128179656526 37.0 35.0 40.0 30.0 41.0 32 35.67375816071241 37.0 35.0 40.0 30.0 41.0 33 35.4510344600674 37.0 34.0 40.0 29.0 41.0 34 35.21856535972939 37.0 34.0 40.0 27.0 41.0 35 35.06625505081503 37.0 34.0 40.0 26.0 41.0 36 34.909199221987826 37.0 34.0 40.0 25.0 41.0 37 34.76721136798786 37.0 34.0 40.0 24.0 41.0 38 34.644733928189524 37.0 34.0 40.0 24.0 41.0 39 34.552479122876065 36.0 34.0 40.0 24.0 41.0 40 34.422828987913476 36.0 34.0 40.0 23.0 41.0 41 34.32454863778269 36.0 34.0 40.0 23.0 41.0 42 34.2942836099866 36.0 33.0 40.0 23.0 41.0 43 34.24362360307712 36.0 33.0 40.0 23.0 41.0 44 34.11847665014382 36.0 33.0 40.0 23.0 41.0 45 33.99936030391575 35.0 33.0 40.0 23.0 41.0 46 33.93187331613135 35.0 33.0 40.0 23.0 41.0 47 33.85141207690526 35.0 33.0 40.0 23.0 41.0 48 33.69062247301065 35.0 33.0 40.0 22.0 41.0 49 33.54018126620595 35.0 33.0 40.0 21.0 41.0 50 33.43379620080003 35.0 33.0 40.0 20.0 41.0 51 33.14038133732547 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 5.0 14 25.0 15 49.0 16 119.0 17 298.0 18 642.0 19 1344.0 20 2410.0 21 3982.0 22 6377.0 23 9622.0 24 14376.0 25 21574.0 26 27740.0 27 30969.0 28 32139.0 29 35378.0 30 39845.0 31 47452.0 32 58786.0 33 76467.0 34 124265.0 35 188986.0 36 155103.0 37 153966.0 38 206342.0 39 342113.0 40 60.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.11351157084302 24.688092794529112 29.215698432966054 16.982697201661818 2 34.453170576764165 25.681804664276616 27.62575944137005 12.239265317589174 3 28.009450544722412 24.50656083946349 34.34832622348994 13.135662392324154 4 24.704543930226937 26.726704875483886 34.22861257448884 14.340138619800333 5 22.189165282029414 31.037155522709526 33.015594411169566 13.758084784091498 6 20.28602197618635 39.63008988647451 29.769468969994396 10.314419167344749 7 84.2534790988321 3.368370034129779 10.580231556062307 1.7979193109758183 8 84.49037545288078 2.844970824543576 10.396358477839687 2.268295244735953 9 79.3937503400956 5.563647545806922 12.102910712093735 2.9396914020037483 10 35.40075599295891 32.292124082058265 20.752917862010406 11.554202062972417 11 31.76821868368136 22.515024316044034 28.165230145061056 17.551526855213552 12 30.63340668852559 23.04253630955469 29.23803401335579 17.08602298856393 13 21.976439442736762 31.915456348176896 29.418996506031874 16.68910770305447 14 16.697269997304545 36.52158452277153 29.839386296710153 16.94175918321377 15 15.2472289327389 30.383349425918638 38.540391967290084 15.829029674052384 16 17.643083752731837 28.260456911311927 37.54338987040302 16.553069465553218 17 18.00019994457233 28.686920967478635 29.36242990867089 23.95044917927815 18 19.27737753711313 31.10504809426248 32.74440376655079 16.873170602073603 19 21.994852059998557 32.505609204536974 27.608991937678034 17.890546797786435 20 23.08246195042134 31.288161889299044 27.974460244565115 17.654915915714504 21 19.77413856158862 33.02476908300104 30.323049686226224 16.87804266918411 22 19.846207190664867 28.85092613566619 29.2509418275187 22.051924846150246 23 16.96453767879537 33.753111479222845 28.70849726468232 20.57385357729946 24 17.411439107386688 32.31756006879106 33.83100127939217 16.43999954443009 25 17.73641231101758 33.2058581228748 31.245135842089343 17.812593724018278 26 16.740992054101458 35.888152524806415 28.1569413036133 19.213914117478826 27 16.837104650736062 36.162823217361264 29.67765897808076 17.322413153821913 28 15.401110325112406 33.59056160380857 33.2626145410323 17.745713530046732 29 15.998792739734174 31.335743635625064 33.01141835364626 19.654045270994498 30 17.07368463679056 33.908448164369624 31.89191856940924 17.125948629430574 31 21.881149402887047 32.55357059245602 27.47086567141514 18.094414333241797 32 22.16777880562224 32.130713131423065 28.236792585346592 17.464715477608106 33 21.04600117182705 32.58058841915975 27.30508884246013 19.06832156655307 34 17.605562508621027 32.44176614330964 29.81977148107044 20.132899866998898 35 17.500971249742157 32.43031362192 29.645515989871164 20.42319913846668 36 23.03810715763605 31.569159941737666 28.368338397330362 17.024394503295923 37 18.115610988852456 35.05661088888017 29.185200558326237 17.642577563941135 38 18.57004197570547 35.23662427757369 27.616015307149034 18.577318439571815 39 17.515777271870203 34.644952854841506 28.50576865400604 19.33350121928225 40 20.232745605964926 32.69011501874797 28.30734264805073 18.769796727236372 41 17.532291681166868 31.66875258630835 29.16817996023887 21.630775772285908 42 18.817821388754258 32.96301405053536 27.492695063014178 20.726469497696208 43 18.58339270506024 32.905308528395295 27.93909030281479 20.572208463729673 44 18.37205888494202 34.083462938754955 28.15814350199122 19.386334674311804 45 17.32475427697891 36.44148014664289 25.815122137027835 20.418643439350355 46 19.966553575654345 34.403564075275334 27.411641582902966 18.218240766167355 47 19.011944789988597 33.807906415816376 27.92282898791348 19.25731980628155 48 19.115333850489545 32.57812074880508 29.424311488334247 18.882233912371127 49 19.12583726789662 31.135166327309268 29.214369687390455 20.524626717403656 50 18.043542359776215 33.21458987951441 29.678101893272625 19.06376586743675 51 17.296407704699586 33.91395296746851 27.96035023202429 20.829289095807617 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1875.0 1 2548.0 2 3221.0 3 25072.0 4 46923.0 5 30609.0 6 14295.0 7 14032.5 8 13770.0 9 17668.5 10 21567.0 11 25767.0 12 29967.0 13 31384.5 14 32802.0 15 30739.5 16 28677.0 17 24906.5 18 21136.0 19 19112.5 20 17089.0 21 15754.5 22 14420.0 23 13962.0 24 13504.0 25 13915.5 26 16274.0 27 18221.0 28 21714.0 29 25207.0 30 28681.0 31 32155.0 32 34909.5 33 37664.0 34 42112.5 35 46561.0 36 50105.0 37 53649.0 38 56465.0 39 59281.0 40 70300.0 41 81319.0 42 94754.0 43 108189.0 44 112213.0 45 116237.0 46 122356.0 47 128475.0 48 130489.0 49 132503.0 50 123090.5 51 113678.0 52 100771.5 53 87865.0 54 77973.5 55 68082.0 56 60960.5 57 53839.0 58 48701.5 59 43564.0 60 37272.5 61 30981.0 62 27539.5 63 24098.0 64 20918.0 65 17738.0 66 14368.5 67 10999.0 68 8505.0 69 6011.0 70 5098.5 71 4186.0 72 3414.0 73 2642.0 74 2055.0 75 1246.5 76 1025.0 77 805.5 78 586.0 79 429.0 80 272.0 81 213.5 82 155.0 83 113.5 84 72.0 85 63.5 86 55.0 87 55.0 88 55.0 89 35.5 90 16.0 91 11.5 92 7.0 93 7.0 94 7.0 95 5.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1580438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.012360809723678 #Duplication Level Percentage of deduplicated Percentage of total 1 73.75963147049238 19.186621470026974 2 8.711197692942378 4.531976349472992 3 3.9596771258704875 3.0900165026445827 4 2.403623907461356 2.5009572932705066 5 1.54481706526591 2.009216944335765 6 1.0929623023859698 1.70583178566541 7 0.760224777342553 1.3842668843308434 8 0.558556351231386 1.1623495472634848 9 0.46745925141358163 1.0943746840452078 >10 5.403862320731548 34.685189863083096 >50 1.2473647972379707 21.28325902230069 >100 0.08420278417953046 3.2180903490982313 >500 0.003703934679760737 0.6741154368547404 >1k 0.002469289786507158 0.9803096519558883 >5k 0.0 0.0 >10k+ 2.469289786507158E-4 2.4934242156516593 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38819 2.4562178332841906 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3032 0.1918455516761809 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC 1974 0.12490208410579852 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.327359883779054E-5 0.0 0.0 0.047898114320207436 0.0 2 6.327359883779054E-5 0.0 0.0 0.2173448120078105 0.0 3 6.327359883779054E-5 0.0 0.0 0.43842276634705063 0.0 4 6.327359883779054E-5 0.0 0.0 0.6827854050585976 0.0 5 6.327359883779054E-5 0.0 0.0 1.3272902828203321 0.0 6 6.327359883779054E-5 0.0 0.0 2.1803449423514243 0.0 7 6.327359883779054E-5 0.0 0.0 2.7402530184670324 0.0 8 6.327359883779054E-5 0.0 0.0 3.6678439774290417 0.0 9 6.327359883779054E-5 0.0 0.0 4.180107033619794 0.0 10 6.327359883779054E-5 0.0 0.0 4.848149690149186 0.0 11 6.327359883779054E-5 0.0 0.0 5.565672300969731 0.0 12 6.327359883779054E-5 0.0 0.0 6.111976553335214 0.0 13 6.327359883779054E-5 0.0 0.0 6.334636347645399 0.0 14 6.327359883779054E-5 0.0 0.0 6.444099673634777 0.0 15 6.327359883779054E-5 0.0 0.0 6.5606496426939875 0.0 16 6.327359883779054E-5 0.0 0.0 6.806087932585777 0.0 17 6.327359883779054E-5 0.0 0.0 7.090629306559321 0.0 18 6.327359883779054E-5 0.0 0.0 7.437684996184602 0.0 19 6.327359883779054E-5 0.0 0.0 7.612636496971093 0.0 20 6.327359883779054E-5 0.0 0.0 7.790814951298311 0.0 21 6.327359883779054E-5 0.0 0.0 8.01765080313179 0.0 22 6.327359883779054E-5 0.0 0.0 8.265620036977092 0.0 23 6.327359883779054E-5 0.0 0.0 8.534089916845836 0.0 24 6.327359883779054E-5 0.0 0.0 8.725682374126666 0.0 25 6.327359883779054E-5 0.0 0.0 8.884878748802548 0.0 26 6.327359883779054E-5 0.0 0.0 9.043126019495862 0.0 27 6.327359883779054E-5 0.0 0.0 9.21073778281717 0.0 28 6.327359883779054E-5 0.0 0.0 9.37967829171407 0.0 29 6.327359883779054E-5 0.0 0.0 9.571840211384439 0.0 30 6.327359883779054E-5 0.0 0.0 9.811140962188963 0.0 31 6.327359883779054E-5 0.0 0.0 10.004947995429115 0.0 32 6.327359883779054E-5 0.0 0.0 10.182999902558658 0.0 33 6.327359883779054E-5 0.0 0.0 10.369530471932464 0.0 34 6.327359883779054E-5 0.0 0.0 10.562704769184238 0.0 35 6.327359883779054E-5 0.0 0.0 10.802258614384113 0.0 36 6.327359883779054E-5 0.0 0.0 10.994989996444025 0.0 37 6.327359883779054E-5 0.0 0.0 11.196263314347036 0.0 38 6.327359883779054E-5 0.0 0.0 11.415063419128115 0.0 39 6.327359883779054E-5 0.0 0.0 11.713524984845973 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGCGC 35 1.21232E-7 45.000004 40 CGTATCG 20 7.034092E-4 45.0 15 ATAATCG 20 7.034092E-4 45.0 18 TCTAGCG 25 3.891473E-5 45.0 1 TATAGCG 25 3.891473E-5 45.0 1 CGATCGA 20 7.034092E-4 45.0 10 ACGCGCT 40 6.8175723E-9 45.0 41 CGTTTTT 10990 0.0 43.095997 1 AAATGCG 55 6.184564E-11 40.909092 1 CGGTCTA 450 0.0 40.000004 31 TCGTTGA 45 1.9290383E-8 40.0 24 ATTCACG 45 1.9290383E-8 40.0 1 CACGACG 455 0.0 39.56044 26 ACGGGAT 690 0.0 39.45652 5 ATACGAA 600 0.0 39.375004 19 GACGTAG 80 0.0 39.375 1 GGACTAA 760 0.0 39.375 8 CCTCGCG 40 3.4593177E-7 39.375 20 TAACGCC 225 0.0 39.000004 12 TAGTACG 75 0.0 39.000004 1 >>END_MODULE