SRR1547930_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547930_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1088319
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30859	2.8354737903133183	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2473	0.22723117027268658	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	1230	0.11301833377897472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCTA	20	7.0331217E-4	45.0	22
CGACGGT	90	0.0	45.0	28
CTCGGAC	20	7.0331217E-4	45.0	38
ACGCGAG	30	2.165396E-6	44.999996	1
CGTTTTT	12365	0.0	44.035583	1
CGGGATC	355	0.0	40.56338	6
ACGGGAT	650	0.0	40.499996	5
CGTTAGG	95	0.0	40.263157	2
TGGGCGA	415	0.0	40.12048	6
TTACGGG	310	0.0	39.919357	3
GGCGCGA	85	0.0	39.705883	8
GCGCGAC	80	0.0	39.375	9
CTAAGCG	40	3.4579898E-7	39.375	1
CGCGACC	80	0.0	39.375	10
CGTTCGG	40	3.4579898E-7	39.375	45
TCGGCGG	40	3.4579898E-7	39.375	2
GCGATCG	40	3.4579898E-7	39.375	9
GGCGATA	360	0.0	39.375	8
CGGTTTT	1070	0.0	39.32243	1
TACGGGA	460	0.0	39.130432	4