##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547930_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1088319 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.323570570760964 31.0 31.0 33.0 30.0 34.0 2 31.64951728307601 31.0 31.0 34.0 30.0 34.0 3 31.351924389815853 31.0 31.0 34.0 28.0 34.0 4 35.36675184389871 37.0 35.0 37.0 33.0 37.0 5 35.41222288685579 37.0 35.0 37.0 33.0 37.0 6 35.544070258811985 37.0 35.0 37.0 33.0 37.0 7 35.93338258359911 37.0 35.0 37.0 35.0 37.0 8 35.97250530405148 37.0 35.0 37.0 35.0 37.0 9 37.752664430190045 39.0 38.0 39.0 35.0 39.0 10 37.21791680564246 39.0 37.0 39.0 34.0 39.0 11 36.9254345463049 39.0 37.0 39.0 33.0 39.0 12 36.6169753537336 39.0 35.0 39.0 32.0 39.0 13 36.51462484804547 39.0 35.0 39.0 32.0 39.0 14 37.666749363008456 40.0 36.0 41.0 33.0 41.0 15 37.81280488533233 40.0 36.0 41.0 33.0 41.0 16 37.87344611276657 40.0 36.0 41.0 33.0 41.0 17 37.808000227874366 40.0 36.0 41.0 33.0 41.0 18 37.57821833488159 39.0 36.0 41.0 33.0 41.0 19 37.373652394196924 39.0 36.0 41.0 33.0 41.0 20 37.07604388051665 38.0 35.0 41.0 32.0 41.0 21 36.957547373518246 38.0 35.0 41.0 32.0 41.0 22 36.88065172068116 38.0 35.0 41.0 32.0 41.0 23 36.74362847657718 38.0 35.0 41.0 32.0 41.0 24 36.676091293085946 38.0 35.0 40.0 32.0 41.0 25 36.64786703163319 38.0 35.0 40.0 31.0 41.0 26 36.5429446697154 38.0 35.0 40.0 31.0 41.0 27 36.463264906704744 38.0 35.0 40.0 31.0 41.0 28 36.3878954607978 38.0 35.0 40.0 31.0 41.0 29 36.344300705951106 38.0 35.0 40.0 31.0 41.0 30 36.20601588321071 38.0 35.0 40.0 31.0 41.0 31 35.97927813444404 38.0 35.0 40.0 30.0 41.0 32 35.58780651628796 38.0 35.0 40.0 29.0 41.0 33 35.2306511234298 38.0 34.0 40.0 25.0 41.0 34 34.86554585558095 38.0 34.0 40.0 23.0 41.0 35 34.56646075277561 38.0 34.0 40.0 22.0 41.0 36 34.384220067829375 38.0 34.0 40.0 21.0 41.0 37 34.23013564956598 38.0 33.0 40.0 20.0 41.0 38 34.089233028183834 37.0 33.0 40.0 18.0 41.0 39 33.99109268514103 37.0 33.0 40.0 18.0 41.0 40 33.86316328208917 37.0 33.0 40.0 18.0 41.0 41 33.72845277901057 37.0 33.0 40.0 18.0 41.0 42 33.69862145198237 37.0 33.0 40.0 18.0 41.0 43 33.619447055504864 37.0 33.0 40.0 18.0 41.0 44 33.45044605487913 37.0 33.0 40.0 16.0 41.0 45 33.35848129087152 36.0 33.0 40.0 17.0 41.0 46 33.31890282169107 36.0 33.0 40.0 16.0 41.0 47 33.26540196394623 36.0 33.0 40.0 16.0 41.0 48 33.12760688731888 36.0 33.0 40.0 15.0 41.0 49 32.99332732406583 36.0 32.0 40.0 15.0 41.0 50 32.888438959533005 35.0 32.0 40.0 15.0 41.0 51 32.64164918557886 35.0 31.0 40.0 14.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 1.0 13 1.0 14 10.0 15 26.0 16 77.0 17 263.0 18 558.0 19 1145.0 20 2033.0 21 3360.0 22 5055.0 23 7923.0 24 12900.0 25 20199.0 26 27471.0 27 28926.0 28 27072.0 29 26212.0 30 27583.0 31 31744.0 32 38201.0 33 47943.0 34 74862.0 35 109592.0 36 86407.0 37 103908.0 38 150007.0 39 254809.0 40 29.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.98332198555754 23.43669457208778 27.353928397831883 20.22605504452279 2 37.487170581419605 23.96273519069317 26.61250975127697 11.937584476610258 3 25.929989277041017 23.725212920108902 38.24540415080505 12.099393652045034 4 23.06180448930874 25.484347879619857 38.059796805899744 13.394050825171663 5 21.144627632155647 29.522226479552412 36.75310272080153 12.580043167490414 6 19.918700307538508 37.68068002120702 32.88842701450586 9.512192656748619 7 81.46618776296289 2.72364995924908 14.513851177825618 1.296311099962419 8 82.3460768396031 2.1098593335226163 14.105790673506574 1.4382731533677167 9 77.7085578768725 5.067080515914911 15.266939197055276 1.957422410157316 10 35.779491123466556 35.28184291554223 20.34311631056703 8.595549650424186 11 25.667658103919898 24.16690327008901 35.35764789551593 14.807790730475165 12 25.889100530267324 22.275454163714866 35.72987331839286 16.105571987624952 13 20.167800065973303 27.754270576917246 36.482869452798305 15.595059904311146 14 15.9709607201565 31.460628731098144 36.28099849400773 16.287412054737626 15 14.682735484724606 27.831913253375156 42.879982799160906 14.605368462739326 16 18.332676356840228 26.43949062728851 40.87220750533621 14.355625510535056 17 17.9508949122454 26.09859792946737 35.38769423303278 20.562812925254452 18 18.34783735283497 27.70327449948039 37.5307239880954 16.41816415958924 19 20.800794619959774 28.87765443771541 33.87958861326504 16.44196232905977 20 22.05805466963271 28.857531661213304 33.64629304459446 15.438120624559525 21 20.1773560876912 28.472718017419524 35.822309451548676 15.527616443340603 22 19.43841833138997 26.201417047758973 35.63082147789389 18.729343142957166 23 16.503065737159787 29.856595354854598 35.236084273085375 18.404254634900244 24 16.42018562572187 28.882248678925944 38.499925113868265 16.19764058148392 25 16.68490580427246 30.191056114980995 36.28320372978878 16.840834350957763 26 16.40640290209029 33.40224695149124 33.10141603702591 17.08993410939256 27 16.203704979881817 31.924922747834046 35.69900001745812 16.17237225482602 28 15.094655151660497 30.776729984499028 37.97691669446183 16.151698169378648 29 15.932920402933332 28.96476125106701 37.60423184746384 17.498086498535812 30 17.049596671564128 30.46854828409685 35.45715916013595 17.02469588420307 31 20.309118925609127 29.72134089361667 33.09535163862801 16.87418854214619 32 20.27447834688175 30.241868422769425 32.923986441475336 16.559666788873486 33 19.564759964679475 30.97547685926645 32.181373292205684 17.278389883848394 34 17.067881751582025 31.370949142668646 33.16003855487224 18.401130550877088 35 17.24476003818733 31.070853306796998 32.84928407939216 18.83510257562351 36 20.8924956745219 31.277318506798096 30.952046229092755 16.878139589587242 37 18.05481664842753 32.993359483754304 32.31083900951835 16.640984858299817 38 18.079074242019114 33.666875245217625 30.06995191667149 18.184098596091772 39 17.82850432639695 32.89375633431007 31.10475880693069 18.172980532362295 40 19.446136656623654 31.800510695852964 30.359940421879983 18.393412225643402 41 17.19036422225469 31.18653630047808 31.287425837461257 20.335673639805975 42 18.85210126810246 32.085721190202506 29.541430407812413 19.520747133882622 43 18.786495503616127 31.913253375159307 30.42122759962842 18.87902352159615 44 18.15396037375071 33.66108650129236 30.142908467094664 18.042044657862263 45 17.057590651270445 34.74560308144947 28.794498671804863 19.402307595475225 46 19.008121699611973 33.63480744156814 29.236464676257608 18.120606182562284 47 18.11196900908649 32.78303512113636 30.32814827270313 18.77684759707402 48 18.719327697118217 31.96379002847511 30.856577896737996 18.460304377668677 49 18.46232584380131 31.214836826334924 30.71498338262954 19.607853947234222 50 17.136152175970466 33.1361485005775 31.002582882408557 18.72511644104348 51 16.62655894089876 33.913494113398734 29.53104742267662 19.928899523025876 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 911.0 1 1292.0 2 1673.0 3 21505.5 4 41338.0 5 28488.0 6 15638.0 7 14452.0 8 13266.0 9 14152.0 10 15038.0 11 16396.0 12 17754.0 13 18332.5 14 18911.0 15 18186.5 16 17462.0 17 16531.0 18 15600.0 19 14599.0 20 13598.0 21 13404.0 22 13210.0 23 13233.5 24 13257.0 25 13875.0 26 16110.5 27 17728.0 28 19720.0 29 21712.0 30 24524.5 31 27337.0 32 30485.5 33 33634.0 34 36529.0 35 39424.0 36 43069.5 37 46715.0 38 48741.5 39 50768.0 40 57218.0 41 63668.0 42 68749.0 43 73830.0 44 75692.0 45 77554.0 46 76946.5 47 76339.0 48 76624.0 49 76909.0 50 73543.0 51 70177.0 52 63653.0 53 57129.0 54 49457.5 55 41786.0 56 36885.5 57 31985.0 58 27929.5 59 23874.0 60 20596.5 61 17319.0 62 14564.0 63 11809.0 64 9461.5 65 7114.0 66 5607.0 67 4100.0 68 3049.5 69 1999.0 70 1718.0 71 1437.0 72 1122.5 73 808.0 74 638.5 75 371.5 76 274.0 77 197.0 78 120.0 79 86.0 80 52.0 81 40.5 82 29.0 83 32.5 84 36.0 85 23.0 86 10.0 87 13.0 88 16.0 89 10.5 90 5.0 91 4.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1088319.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.33923672798448 #Duplication Level Percentage of deduplicated Percentage of total 1 72.79765825719797 25.72613678394033 2 9.087304557602602 6.422768139608212 3 4.408016852711958 4.673278531767989 4 2.5681842075853734 3.630306786917229 5 1.6378631343375596 2.8940416516196823 6 1.170818429104029 2.4825497778956507 7 0.9088662281407999 2.248304715323665 8 0.7666957045530952 2.167555280122454 9 0.6449126413476053 2.0511648451307494 >10 5.881374353236321 40.52576832981033 >50 0.10993965614966325 2.4598851064354728 >100 0.015742266892748578 1.0173232833334462 >500 0.0015742266842017807 0.40073561998510926 >1k 7.871133421008904E-4 0.43893623901191736 >5k 0.0 0.0 >10k+ 2.623711140336301E-4 2.8612449090977523 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30859 2.8354737903133183 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2473 0.22723117027268658 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT 1230 0.11301833377897472 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05724424548317175 0.0 2 0.0 0.0 0.0 0.1500479179358258 0.0 3 0.0 0.0 0.0 0.25681808366848324 0.0 4 0.0 0.0 0.0 0.37341992559166937 0.0 5 0.0 0.0 0.0 0.6963950826917475 0.0 6 0.0 0.0 0.0 1.2467851797129335 0.0 7 0.0 0.0 0.0 1.6504352124698733 0.0 8 0.0 0.0 0.0 2.259447827337389 0.0 9 0.0 0.0 0.0 2.6333271770501114 0.0 10 0.0 0.0 0.0 3.0457981529312637 0.0 11 0.0 0.0 0.0 3.4154508007303006 0.0 12 0.0 0.0 0.0 3.685684068733524 0.0 13 0.0 0.0 0.0 3.825257116709347 0.0 14 0.0 0.0 0.0 3.9070346102567353 0.0 15 0.0 0.0 0.0 3.9822882812851748 0.0 16 0.0 0.0 0.0 4.112580962015732 0.0 17 0.0 0.0 0.0 4.291572599577881 0.0 18 0.0 0.0 0.0 4.512004292858987 0.0 19 0.0 0.0 0.0 4.641286240523229 0.0 20 0.0 0.0 0.0 4.779756670608526 0.0 21 0.0 0.0 0.0 4.9429441184064595 0.0 22 0.0 0.0 0.0 5.129929735674926 0.0 23 0.0 0.0 0.0 5.3353842026097125 0.0 24 0.0 0.0 0.0 5.497836571813963 0.0 25 0.0 0.0 0.0 5.640074279691892 0.0 26 0.0 0.0 0.0 5.784517223350874 0.0 27 0.0 0.0 0.0 5.926387391931961 0.0 28 0.0 0.0 0.0 6.085991331585684 0.0 29 0.0 0.0 0.0 6.263237157487832 0.0 30 0.0 0.0 0.0 6.482658117702622 0.0 31 0.0 0.0 0.0 6.679567295985827 0.0 32 0.0 0.0 0.0 6.869768882101663 0.0 33 0.0 0.0 0.0 7.068240102396448 0.0 34 0.0 0.0 0.0 7.256971531324915 0.0 35 0.0 0.0 0.0 7.477586994254442 0.0 36 0.0 0.0 0.0 7.684419733552387 0.0 37 0.0 0.0 0.0 7.896398023006122 0.0 38 0.0 0.0 0.0 8.121423957497756 0.0 39 0.0 0.0 0.0 8.4118718868273 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCTA 20 7.0331217E-4 45.0 22 CGACGGT 90 0.0 45.0 28 CTCGGAC 20 7.0331217E-4 45.0 38 ACGCGAG 30 2.165396E-6 44.999996 1 CGTTTTT 12365 0.0 44.035583 1 CGGGATC 355 0.0 40.56338 6 ACGGGAT 650 0.0 40.499996 5 CGTTAGG 95 0.0 40.263157 2 TGGGCGA 415 0.0 40.12048 6 TTACGGG 310 0.0 39.919357 3 GGCGCGA 85 0.0 39.705883 8 GCGCGAC 80 0.0 39.375 9 CTAAGCG 40 3.4579898E-7 39.375 1 CGCGACC 80 0.0 39.375 10 CGTTCGG 40 3.4579898E-7 39.375 45 TCGGCGG 40 3.4579898E-7 39.375 2 GCGATCG 40 3.4579898E-7 39.375 9 GGCGATA 360 0.0 39.375 8 CGGTTTT 1070 0.0 39.32243 1 TACGGGA 460 0.0 39.130432 4 >>END_MODULE