SRR1547921_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547921_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1426779
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12181	0.8537411890699261	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2740	0.19204095378471367	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	2179	0.1527216198163836	TruSeq Adapter, Index 21 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1932	0.13540989880002438	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAGCG	35	1.2122109E-7	45.000004	1
TAACGAC	30	2.1658707E-6	45.000004	22
GCGATCG	30	2.1658707E-6	45.000004	9
TGATCGC	20	7.033859E-4	45.0	28
CTATGCG	45	3.8562575E-10	45.0	1
CTCACGG	40	6.8175723E-9	45.0	2
GACCGTT	20	7.033859E-4	45.0	23
GCTATCG	20	7.033859E-4	45.0	41
CCTCGCG	45	3.8562575E-10	45.0	20
TAGTTCG	20	7.033859E-4	45.0	1
CCCGTAG	40	6.8175723E-9	45.0	43
CTAAACG	55	1.8189894E-12	45.0	1
CTACGCT	20	7.033859E-4	45.0	40
TGTTACG	20	7.033859E-4	45.0	1
GCGGCCC	20	7.033859E-4	45.0	38
CGCCGTT	20	7.033859E-4	45.0	26
GTGACCG	20	7.033859E-4	45.0	9
CGATCGT	20	7.033859E-4	45.0	10
TCGACTG	20	7.033859E-4	45.0	1
GCGTCGC	20	7.033859E-4	45.0	9