##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547920_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2669183 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.318987870071105 31.0 31.0 33.0 30.0 34.0 2 31.704239462037634 31.0 31.0 34.0 30.0 34.0 3 31.740257599422744 31.0 31.0 34.0 30.0 34.0 4 35.56681988458641 37.0 35.0 37.0 33.0 37.0 5 35.48137913361504 37.0 35.0 37.0 33.0 37.0 6 35.55892158761689 37.0 35.0 37.0 33.0 37.0 7 35.919550289358206 37.0 35.0 37.0 35.0 37.0 8 35.940280602716264 37.0 35.0 37.0 35.0 37.0 9 37.70239994784921 39.0 37.0 39.0 35.0 39.0 10 37.14480723127639 39.0 37.0 39.0 33.0 39.0 11 36.83902714800746 39.0 37.0 39.0 32.0 39.0 12 36.423160944753505 38.0 35.0 39.0 32.0 39.0 13 36.28197654488284 39.0 35.0 39.0 32.0 39.0 14 37.344191087684884 39.0 35.0 41.0 32.0 41.0 15 37.524814147250304 39.0 35.0 41.0 32.0 41.0 16 37.6025810144902 40.0 35.0 41.0 33.0 41.0 17 37.537055720795465 39.0 35.0 41.0 32.0 41.0 18 37.41896902535345 39.0 36.0 41.0 32.0 41.0 19 37.347499590698725 39.0 36.0 41.0 32.0 41.0 20 37.1821448735437 39.0 35.0 41.0 32.0 41.0 21 37.06728126171941 39.0 35.0 41.0 32.0 41.0 22 36.97798165206357 39.0 35.0 41.0 32.0 41.0 23 36.85186740661843 38.0 35.0 41.0 31.0 41.0 24 36.80445589530579 38.0 35.0 41.0 31.0 41.0 25 36.81922595790547 38.0 35.0 41.0 31.0 41.0 26 36.71027351815143 38.0 35.0 41.0 31.0 41.0 27 36.63384751064277 38.0 35.0 41.0 31.0 41.0 28 36.57233842715168 38.0 35.0 41.0 31.0 41.0 29 36.564697886956424 38.0 35.0 40.0 31.0 41.0 30 36.46451667045684 38.0 35.0 40.0 31.0 41.0 31 36.309945777415784 38.0 35.0 40.0 30.0 41.0 32 36.14141293421995 38.0 35.0 40.0 30.0 41.0 33 35.959323133707954 38.0 35.0 40.0 30.0 41.0 34 35.76337291223569 38.0 35.0 40.0 29.0 41.0 35 35.62760702432168 38.0 35.0 40.0 28.0 41.0 36 35.52744341620638 38.0 35.0 40.0 27.0 41.0 37 35.39977850900444 38.0 34.0 40.0 27.0 41.0 38 35.34038805132507 38.0 34.0 40.0 27.0 41.0 39 35.25560967532012 38.0 34.0 40.0 26.0 41.0 40 35.1098714475553 38.0 34.0 40.0 25.0 41.0 41 35.01767769388611 38.0 34.0 40.0 25.0 41.0 42 35.024934221445285 38.0 34.0 40.0 25.0 41.0 43 34.99055029198073 38.0 34.0 40.0 25.0 41.0 44 34.84754511024534 38.0 34.0 40.0 24.0 41.0 45 34.7362646173005 37.0 34.0 40.0 24.0 41.0 46 34.67439399996179 37.0 34.0 40.0 24.0 41.0 47 34.615058615314126 37.0 34.0 40.0 24.0 41.0 48 34.48256451505948 37.0 33.0 40.0 23.0 41.0 49 34.35899674169961 37.0 33.0 40.0 24.0 41.0 50 34.25725324940253 37.0 33.0 40.0 23.0 41.0 51 33.96296919319507 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 3.0 12 0.0 13 10.0 14 30.0 15 70.0 16 154.0 17 388.0 18 954.0 19 1910.0 20 3322.0 21 5589.0 22 8915.0 23 13744.0 24 20882.0 25 31100.0 26 41308.0 27 46972.0 28 50485.0 29 56639.0 30 65393.0 31 79634.0 32 98070.0 33 125311.0 34 202040.0 35 286481.0 36 206398.0 37 257181.0 38 394460.0 39 671657.0 40 80.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.833585782615877 25.452807094905072 29.090362107056727 15.623245015422322 2 30.576734528880184 26.368443077900615 30.090818051815855 12.964004341403342 3 27.86612982324554 26.21566224571339 33.27377703214804 12.644430898893033 4 25.335355425236862 28.018198827131748 32.27650558241979 14.369940165211602 5 22.581291728592607 32.47349469856506 30.56171120526393 14.383502367578394 6 21.325364353062344 39.96350194048141 27.95746863366056 10.753665072795684 7 88.01108803705104 2.7606574745905395 7.539722829045442 1.6885316593129807 8 88.41686763327955 2.1852379548348693 7.291781792406141 2.1061126194794437 9 83.56853014574122 5.199306304588333 8.668982231641667 2.563181318028775 10 38.5710533897451 38.90767324683246 13.170022437577341 9.351250925845099 11 29.97497736198679 24.094451373322848 29.58474559443845 16.34582567025191 12 29.555335846212117 23.489322388161472 29.521355411000293 17.433986354626114 13 22.102381140596204 30.67444232935696 30.752443725289723 16.47073280475711 14 16.67585174939298 34.26550371405782 30.949507770729845 18.109136765819354 15 15.321504745084919 27.65557850473347 40.10429408549358 16.918622664688034 16 19.164815600878622 25.867840459046832 37.93475381792856 17.03259012214599 17 18.88405553309758 25.504433379052692 30.339883027877818 25.271628059971906 18 19.376341000223665 27.541311330096136 33.57896405004827 19.503383619631926 19 22.787085036882072 28.248006974418765 29.317997304793263 19.6469106839059 20 23.98010926939067 28.59594115502759 28.541917133444954 18.88203244213679 21 21.486162619797895 28.32331091573714 31.96573633205367 18.224790132411304 22 21.248411967257397 24.960821344958365 30.704076865467822 23.086689822316416 23 17.65705086537716 30.069350808843005 30.392445928210993 21.881152397568844 24 18.178071717075976 28.13621246651129 34.82781060721577 18.85790520919697 25 18.472955956935134 29.245278424147013 31.84794748055866 20.433818138359193 26 17.708976866704155 32.83158179862527 28.995089508662385 20.464351826008183 27 18.068450158718978 31.69374299176939 31.057705672484804 19.180101177026827 28 16.349309882462162 29.32459108273955 34.81690839481594 19.509190639982346 29 17.428216798923117 27.49908867245146 33.6974647298443 21.375229798781127 30 18.983936283124837 29.487449905083317 31.736789871657358 19.79182394013449 31 22.637563629020566 29.034277529865882 28.17880977063019 20.149349070483368 32 23.76082868802926 29.01442126673218 28.159478012560395 19.065272032678163 33 23.18889338048384 28.89460932427638 27.81869957960919 20.097797715630588 34 19.49154479104655 28.66378963150897 30.34299259361385 21.501672983830634 35 19.898036215576077 27.883850601476183 30.47213323327775 21.745979949669994 36 24.392107997091244 27.36961085096076 28.941440133553975 19.29684101839402 37 19.318795301783354 30.214301529719016 31.14964391725858 19.31725925123905 38 20.681871568940757 30.692387895472134 28.10283146565822 20.52290906992889 39 20.08063890711128 29.690845475937767 29.757907194823286 20.470608422127672 40 22.133064686834885 27.684276424658783 29.27678619262898 20.905872695877353 41 18.54410132238966 27.042169832491815 30.560437407251584 23.853291437866943 42 20.70195261995899 28.351484330598538 28.930987496923215 22.015575552519255 43 20.662652204813234 28.390784745744295 29.555260916917277 21.391302132525198 44 19.992522056374554 29.873710420004922 29.000971458307657 21.13279606531287 45 19.126863913040058 31.82438221733017 26.974845861074343 22.073908008555428 46 21.757781313607946 30.037318535297132 28.149325093109017 20.05557505798591 47 20.517064584931045 28.35676684588505 29.647461414223002 21.4787071549609 48 20.369416409440642 28.386626169880447 30.56527034676903 20.67868707390988 49 20.700528963356952 26.35394425934827 30.67406768288274 22.271459094412034 50 19.910699266404738 29.517646410905506 29.735540800312304 20.83611352237745 51 19.0071268998791 29.48576399594932 28.294275813985024 23.212833290186545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2209.0 1 3196.0 2 4183.0 3 19218.0 4 34253.0 5 24612.0 6 14971.0 7 14510.0 8 14049.0 9 15620.0 10 17191.0 11 19080.0 12 20969.0 13 20839.0 14 20709.0 15 19899.0 16 19089.0 17 17810.5 18 16532.0 19 16093.5 20 15655.0 21 15675.5 22 15696.0 23 16400.0 24 17104.0 25 21606.0 26 29623.0 27 33138.0 28 40350.0 29 47562.0 30 54311.0 31 61060.0 32 66668.5 33 72277.0 34 81820.5 35 91364.0 36 97731.5 37 104099.0 38 118498.0 39 132897.0 40 152292.0 41 171687.0 42 188257.0 43 204827.0 44 208511.5 45 212196.0 46 216078.5 47 219961.0 48 228498.0 49 237035.0 50 232508.5 51 227982.0 52 206940.0 53 185898.0 54 158657.0 55 131416.0 56 113626.0 57 95836.0 58 82935.5 59 70035.0 60 59448.0 61 48861.0 62 40824.5 63 32788.0 64 27202.0 65 21616.0 66 16311.0 67 11006.0 68 8570.0 69 6134.0 70 5215.0 71 4296.0 72 3388.0 73 2480.0 74 2054.5 75 1217.5 76 806.0 77 765.0 78 724.0 79 529.0 80 334.0 81 288.0 82 242.0 83 181.0 84 120.0 85 96.0 86 72.0 87 56.5 88 41.0 89 33.5 90 26.0 91 19.0 92 12.0 93 10.0 94 8.0 95 4.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2669183.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.535997610308844 #Duplication Level Percentage of deduplicated Percentage of total 1 75.69257576818737 17.058077066299916 2 9.140935515235258 4.120002018546581 3 3.487932164904253 2.358120927996048 4 1.8935673317914417 1.706937154568433 5 1.1855072130578752 1.3358293860238089 6 0.8148516578895834 1.1018097008973513 7 0.5942885831211489 0.937502026233643 8 0.449017233326673 0.8095241037789913 9 0.3687428571643695 0.7478989333087218 >10 4.146677127652601 22.11395496410579 >50 1.5695836397649086 25.390252697057047 >100 0.6499294054022801 19.879427922801963 >500 0.004204935856767627 0.633998524337007 >1k 0.0018501717769777559 0.7170862180681273 >5k 1.681974342707051E-4 0.19259515139043004 >10k+ 1.681974342707051E-4 0.8969832045863287 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23664 0.8865634165960146 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5081 0.1903578735515699 No Hit CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 2772 0.10385200265399562 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.492929484415269E-5 0.0 0.0 0.12947782149069584 0.0 2 7.492929484415269E-5 0.0 0.0 0.3859233330948084 0.0 3 7.492929484415269E-5 0.0 0.0 0.5954256414790593 0.0 4 7.492929484415269E-5 0.0 0.0 0.8817304770785668 0.0 5 7.492929484415269E-5 0.0 0.0 1.5681577471458494 0.0 6 7.492929484415269E-5 0.0 0.0 2.34873367618481 0.0 7 7.492929484415269E-5 0.0 0.0 2.8440537797520813 0.0 8 7.492929484415269E-5 0.0 0.0 3.7278448124388626 0.0 9 7.492929484415269E-5 0.0 0.0 4.125382186234514 0.0 10 7.492929484415269E-5 0.0 0.0 4.7151881306002625 0.0 11 7.492929484415269E-5 0.0 0.0 5.469613735738614 0.0 12 7.492929484415269E-5 0.0 0.0 6.072157660227868 0.0 13 7.492929484415269E-5 0.0 0.0 6.329727111254642 0.0 14 7.492929484415269E-5 0.0 0.0 6.443132599001268 0.0 15 7.492929484415269E-5 0.0 0.0 6.5856855824422675 0.0 16 7.492929484415269E-5 0.0 0.0 6.851272468017367 0.0 17 7.492929484415269E-5 0.0 0.0 7.191826113084041 0.0 18 7.492929484415269E-5 0.0 0.0 7.581945486690122 0.0 19 7.492929484415269E-5 0.0 0.0 7.814938129008015 0.0 20 7.492929484415269E-5 0.0 0.0 8.04669443796098 0.0 21 7.492929484415269E-5 0.0 0.0 8.34495049608813 0.0 22 7.492929484415269E-5 0.0 0.0 8.66126451427272 0.0 23 7.492929484415269E-5 3.7464647422076344E-5 0.0 9.000919007801263 0.0 24 7.492929484415269E-5 3.7464647422076344E-5 0.0 9.255603680976538 0.0 25 7.492929484415269E-5 3.7464647422076344E-5 0.0 9.48099099986775 0.0 26 7.492929484415269E-5 3.7464647422076344E-5 0.0 9.690568237546845 0.0 27 7.492929484415269E-5 3.7464647422076344E-5 0.0 9.903742081378459 0.0 28 7.492929484415269E-5 3.7464647422076344E-5 0.0 10.128342642673807 0.0 29 7.492929484415269E-5 3.7464647422076344E-5 0.0 10.378231840979057 0.0 30 7.492929484415269E-5 3.7464647422076344E-5 0.0 10.689975172178153 0.0 31 7.492929484415269E-5 3.7464647422076344E-5 0.0 10.96852482576129 0.0 32 7.492929484415269E-5 3.7464647422076344E-5 0.0 11.218301630124275 0.0 33 7.492929484415269E-5 3.7464647422076344E-5 0.0 11.47407277807479 0.0 34 7.492929484415269E-5 3.7464647422076344E-5 0.0 11.736587562561278 0.0 35 7.492929484415269E-5 3.7464647422076344E-5 0.0 12.036904176296643 0.0 36 7.492929484415269E-5 3.7464647422076344E-5 0.0 12.311969617669527 0.0 37 7.492929484415269E-5 3.7464647422076344E-5 0.0 12.598499241153567 0.0 38 7.492929484415269E-5 3.7464647422076344E-5 0.0 12.883792531272677 0.0 39 7.492929484415269E-5 3.7464647422076344E-5 0.0 13.228167570376403 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCGC 20 7.034964E-4 45.000004 29 GCGCGTC 170 0.0 43.676468 38 CGGTCTA 970 0.0 43.608246 31 CGACGGT 950 0.0 43.578945 28 CTCACGA 990 0.0 43.40909 24 CGTTTTT 11645 0.0 43.087162 1 CGCATCG 230 0.0 43.043476 21 TGCGCGT 175 0.0 42.42857 37 TCACGAC 1010 0.0 42.326733 25 CACGACG 990 0.0 42.272728 26 GCGATAC 75 0.0 42.000004 9 GACGGTC 990 0.0 41.81818 29 TCTCACG 1045 0.0 41.555023 23 TACGGGA 1190 0.0 41.02941 4 ACTAACC 1130 0.0 41.0177 14 CTAAGCG 55 6.184564E-11 40.909092 1 ACGGTCT 1015 0.0 40.788177 30 ACGACGG 1035 0.0 40.652176 27 TAGTACG 95 0.0 40.263153 1 GCGATCG 45 1.9299478E-8 40.0 9 >>END_MODULE