SRR1547918_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547918_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2498761
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43263	1.731378070971974	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3575	0.14307090594098434	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	2557	0.10233071510240474	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATC	20	7.034878E-4	45.000004	35
CGTTTTT	22270	0.0	43.252132	1
TCACGAC	680	0.0	43.014706	25
CGGTCTA	665	0.0	42.631577	31
CGACGGT	695	0.0	40.791363	28
CACGACG	730	0.0	39.760273	26
CTCACGA	745	0.0	39.261745	24
ACGGTCT	725	0.0	39.103447	30
TACGGGA	1440	0.0	39.062504	4
GGGCGAT	3645	0.0	38.95062	7
ATCTCGT	70	0.0	38.57143	19
TAGGGCG	850	0.0	38.382355	5
TAAGGGA	3810	0.0	38.208664	4
GGCGATA	860	0.0	38.197674	8
AGGGCGA	1920	0.0	38.085934	6
TAGTACG	150	0.0	37.5	1
CGTTGCG	30	1.14030554E-4	37.499996	11
CGGTTTT	1700	0.0	37.323532	1
ACGGGAT	1490	0.0	37.298656	5
TCTCACG	780	0.0	37.211536	23