SRR1547917_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547917_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2166807
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45763	2.112001668814989	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT	3871	0.17864996744057038	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3702	0.17085047260785108	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	2947	0.13600657557410512	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCT	2767	0.1276994213144041	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2493	0.1150540864968592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	60	0.0	45.000004	1
CGACTCA	25	3.8919527E-5	45.000004	42
CTACGCG	35	1.2125929E-7	45.0	1
CGTTTTT	17870	0.0	43.904587	1
CGACGGT	450	0.0	42.0	28
AGGGCGA	1685	0.0	41.52819	6
TCGCACG	55	6.184564E-11	40.909092	1
CGATCGT	50	1.0822987E-9	40.500004	10
CGGTTTT	1375	0.0	40.254543	1
CGGTCTA	470	0.0	40.212765	31
GACCGTT	45	1.929584E-8	40.0	9
GGGCGAT	3235	0.0	39.85317	7
CACGACG	475	0.0	39.789474	26
TATAGCG	120	0.0	39.375004	1
ATGACGG	155	0.0	39.193546	2
GGCGATA	735	0.0	39.183674	8
TCACGAC	500	0.0	39.149998	25
TACGGGA	1055	0.0	39.02844	4
TAGGGAC	2810	0.0	38.994663	5
CGTAAGG	295	0.0	38.898304	2