##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547916_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2398683 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48365540590399 31.0 31.0 33.0 30.0 34.0 2 31.895376754660788 31.0 31.0 34.0 30.0 34.0 3 31.946509813927058 33.0 31.0 34.0 30.0 34.0 4 35.75263509183998 37.0 35.0 37.0 35.0 37.0 5 35.72260111069283 37.0 35.0 37.0 33.0 37.0 6 35.79422833279762 37.0 35.0 37.0 35.0 37.0 7 36.003419793278226 37.0 35.0 37.0 35.0 37.0 8 36.00871644981851 37.0 35.0 37.0 35.0 37.0 9 37.80697491081564 39.0 38.0 39.0 35.0 39.0 10 37.36519873613979 39.0 37.0 39.0 35.0 39.0 11 37.1958553923132 39.0 37.0 39.0 34.0 39.0 12 36.79527057139272 39.0 35.0 39.0 33.0 39.0 13 36.68321950003398 39.0 35.0 39.0 33.0 39.0 14 37.840924373916856 40.0 36.0 41.0 33.0 41.0 15 37.96629108556654 40.0 36.0 41.0 33.0 41.0 16 38.01557312908792 40.0 36.0 41.0 33.0 41.0 17 37.94185059051154 40.0 36.0 41.0 33.0 41.0 18 37.820754555729124 39.0 36.0 41.0 33.0 41.0 19 37.7474589180813 39.0 36.0 41.0 33.0 41.0 20 37.60444710701664 39.0 35.0 41.0 33.0 41.0 21 37.495893371487604 39.0 35.0 41.0 33.0 41.0 22 37.42298669728347 39.0 35.0 41.0 33.0 41.0 23 37.28273181575056 39.0 35.0 41.0 32.0 41.0 24 37.23844501336775 39.0 35.0 41.0 32.0 41.0 25 37.26136842592373 39.0 35.0 41.0 32.0 41.0 26 37.17917207067378 39.0 35.0 41.0 32.0 41.0 27 37.10088202567826 39.0 35.0 41.0 32.0 41.0 28 37.05062402993643 39.0 35.0 41.0 32.0 41.0 29 37.048282745156406 39.0 35.0 41.0 32.0 41.0 30 36.96744421834815 39.0 35.0 41.0 31.0 41.0 31 36.840459118608 39.0 35.0 41.0 31.0 41.0 32 36.677452585439596 39.0 35.0 41.0 31.0 41.0 33 36.51557000237214 39.0 35.0 41.0 30.0 41.0 34 36.35002457598607 39.0 35.0 41.0 30.0 41.0 35 36.21627326328656 39.0 35.0 41.0 30.0 41.0 36 36.123918833793375 39.0 35.0 41.0 30.0 41.0 37 36.031115407913425 39.0 35.0 41.0 29.0 41.0 38 35.929135696546815 39.0 35.0 41.0 29.0 41.0 39 35.8555607389555 39.0 35.0 41.0 28.0 41.0 40 35.727013948904464 38.0 35.0 41.0 27.0 41.0 41 35.631637027485496 38.0 35.0 41.0 27.0 41.0 42 35.61479028283437 38.0 35.0 41.0 27.0 41.0 43 35.5468042254854 38.0 35.0 40.0 27.0 41.0 44 35.42563981985114 38.0 35.0 40.0 27.0 41.0 45 35.33008238270751 38.0 34.0 40.0 26.0 41.0 46 35.25856230273029 38.0 34.0 40.0 26.0 41.0 47 35.21081985406158 38.0 34.0 40.0 26.0 41.0 48 35.075162078523924 38.0 34.0 40.0 25.0 41.0 49 34.93551461364424 38.0 34.0 40.0 24.0 41.0 50 34.86399244918982 38.0 34.0 40.0 24.0 41.0 51 34.581672109236614 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 4.0 12 5.0 13 8.0 14 18.0 15 47.0 16 126.0 17 311.0 18 705.0 19 1373.0 20 2577.0 21 4233.0 22 6718.0 23 10208.0 24 16164.0 25 24461.0 26 32818.0 27 36943.0 28 38997.0 29 42727.0 30 48970.0 31 59169.0 32 74458.0 33 97331.0 34 159469.0 35 226040.0 36 176674.0 37 233141.0 38 381974.0 39 722895.0 40 117.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.045550412455505 24.074710997659963 28.800679372805828 14.079059217078704 2 32.97676266517918 25.41123608246692 28.85500084838222 12.75700040397168 3 28.504683611798644 25.360458218113855 32.04450108663796 14.090357083449542 4 25.141046149074302 28.236786603315235 31.85418831917348 14.767978928436982 5 22.905944637119617 32.970425854521004 30.151128765243264 13.972500743116118 6 22.05614497622237 41.341144286260416 26.570830743370426 10.031879994146788 7 89.02647827995612 3.091654878948156 6.627094951688073 1.2547718894076458 8 89.43845435182557 2.596091271752041 6.566728492260128 1.3987258841622674 9 84.19607759758168 5.943845018287119 7.727782287196766 2.1322950969344427 10 32.405991120960955 45.88672200536711 12.408767644578296 9.298519229093632 11 31.685012150417542 24.250432424793107 28.688242673166904 15.376312751622454 12 29.814193872220713 23.786594560431702 29.413307219003094 16.985904348344487 13 23.889067459101515 28.792341464045062 30.08534266512082 17.233248411732603 14 18.575026379058844 32.28171459088174 30.927679897677184 18.215579132382228 15 17.56784869030214 28.23103344627031 37.27503801044156 16.926079852985993 16 21.72508830887616 27.33883551932456 34.71058910243663 16.225487069362647 17 21.72538013568279 25.378759927843735 30.166678965082088 22.729180971391386 18 21.79671094513114 26.8166322936378 32.802083476641144 18.58457328458992 19 23.913205704963932 27.542197113999638 29.452370321547285 19.092226859489145 20 25.32577251766907 28.24979374098203 28.992659722022463 17.431774019326436 21 23.693710256836773 27.06464338972678 31.388516114884705 17.85313023855174 22 23.1245646048269 24.707266445795465 31.294297745888056 20.873871203489582 23 19.614596843351123 28.60173686977395 31.24818911044102 20.535477176433904 24 19.416363062563917 27.51705831908593 34.156618444371354 18.909960173978803 25 19.647406514324736 29.669239328414804 31.54722820814589 19.136125949114575 26 19.9464456120296 31.67609058804352 28.986281221820477 19.391182578106402 27 18.68833855911765 30.89057620369178 31.711193183926344 18.70989205326423 28 17.461915559496607 29.589612299749486 34.338801750794076 18.609670389959824 29 18.81574180498215 27.48779225933564 33.364016837572954 20.332449098109254 30 19.82175218651235 28.81773039622159 32.5293921706203 18.83112524664576 31 22.84007515790957 28.441899158830076 29.926505503228228 18.791520180032126 32 22.96114159311589 28.717050147935346 30.16200973617606 18.159798522772704 33 22.002115327452607 28.90807163764449 29.91675014997813 19.173062884924768 34 20.0989042737202 29.55730290330152 30.526501417652934 19.81729140532534 35 19.084722741604455 29.648144419250062 31.174857202890088 20.092275636255394 36 23.440904863210356 28.461785071224497 29.402551316701707 18.69475874886344 37 20.057840073073432 30.89040944551656 30.019681633629787 19.03206884778022 38 20.28121264877435 30.74086905189223 28.563966143087686 20.41395215624574 39 20.657002196622063 29.668697364345352 29.50031329692169 20.1739871421109 40 21.261208754970955 28.625833426092566 29.35469172041491 20.758266098521563 41 18.931847184475814 28.334089998553374 29.819863650178036 22.914199166792777 42 20.985807628602863 28.62358219072716 28.587687493512064 21.80292268715791 43 21.181956932199878 28.39308070303579 29.638555824175185 20.786406540589148 44 20.01948569277391 30.304462907353745 29.061113952948347 20.614937446924 45 19.477021348798488 31.47068620572206 27.659303042544597 21.392989402934862 46 21.018367162313652 30.069542328019168 28.939380485041166 19.972710024626014 47 20.54135540211024 29.35448327269589 29.42577239260044 20.67838893259343 48 20.98939292936999 28.832530184271953 30.01563774788082 20.16243913847724 49 20.697983018181226 27.62691026700902 30.393136567024488 21.281970147785266 50 19.31701687967939 30.824373208131295 29.419977546011705 20.438632366177607 51 19.598504679442843 29.711387457200473 28.823733690529345 21.86637417282734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1691.0 1 2563.5 2 3436.0 3 16759.5 4 30083.0 5 22134.5 6 14186.0 7 13647.5 8 13109.0 9 13629.0 10 14149.0 11 14744.5 12 15340.0 13 15641.0 14 15942.0 15 14906.0 16 13870.0 17 13103.5 18 12337.0 19 12326.5 20 12316.0 21 12807.5 22 13299.0 23 14881.0 24 16463.0 25 19973.5 26 28365.5 27 33247.0 28 39703.0 29 46159.0 30 51445.0 31 56731.0 32 67692.5 33 78654.0 34 86873.5 35 95093.0 36 103955.5 37 112818.0 38 121306.0 39 129794.0 40 143744.0 41 157694.0 42 173087.5 43 188481.0 44 195216.5 45 201952.0 46 199571.0 47 197190.0 48 189581.0 49 181972.0 50 167881.0 51 153790.0 52 144325.5 53 134861.0 54 122158.0 55 109455.0 56 98684.5 57 87914.0 58 79076.5 59 70239.0 60 63479.0 61 56719.0 62 48196.0 63 39673.0 64 33263.0 65 26853.0 66 21035.0 67 15217.0 68 12256.5 69 9296.0 70 7788.5 71 6281.0 72 5096.5 73 3912.0 74 2974.5 75 1632.0 76 1227.0 77 975.0 78 723.0 79 567.0 80 411.0 81 348.0 82 285.0 83 213.5 84 142.0 85 112.0 86 82.0 87 63.5 88 45.0 89 30.5 90 16.0 91 11.0 92 6.0 93 7.5 94 9.0 95 4.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2398683.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.020697448959314 #Duplication Level Percentage of deduplicated Percentage of total 1 76.3817400803979 15.292157087746958 2 7.832141368292078 3.1360986542410783 3 2.8383497759796104 1.704772263576277 4 1.48134086762012 1.1862990931760526 5 0.9873879870014196 0.9884098076246196 6 0.6516379599951561 0.7827747865992045 7 0.5235692354402186 0.7337554879432093 8 0.43099414067576497 0.6903042634194959 9 0.3794446444814348 0.6837071783211663 >10 5.673806569887882 29.413641964102606 >50 2.380985667525876 33.20555432290329 >100 0.43648183366846277 11.028080470534919 >500 0.0012719214205012216 0.14332412341834755 >1k 6.359607102506108E-4 0.23219611466442977 >5k 0.0 0.0 >10k+ 2.1198690341687026E-4 0.7789243817284373 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18353 0.7651281974316739 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2873 0.11977405934840077 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.168954380382902E-5 0.0 0.0 0.035727939039881466 0.0 2 4.168954380382902E-5 0.0 0.0 0.09863746063985945 0.0 3 4.168954380382902E-5 0.0 0.0 0.16196387767787573 0.0 4 4.168954380382902E-5 0.0 0.0 0.2505541582610124 0.0 5 4.168954380382902E-5 0.0 0.0 0.43694810860793193 0.0 6 4.168954380382902E-5 0.0 0.0 0.6942559729651646 0.0 7 4.168954380382902E-5 0.0 0.0 0.8462143601301214 0.0 8 4.168954380382902E-5 0.0 0.0 1.192821227315156 0.0 9 4.168954380382902E-5 0.0 4.168954380382902E-5 1.3428618954651366 0.0 10 4.168954380382902E-5 0.0 4.168954380382902E-5 1.587746275768828 0.0 11 4.168954380382902E-5 0.0 4.168954380382902E-5 1.862813885786492 0.0 12 4.168954380382902E-5 0.0 4.168954380382902E-5 2.0987767037161644 0.0 13 4.168954380382902E-5 0.0 4.168954380382902E-5 2.2083785143764305 0.0 14 4.168954380382902E-5 0.0 4.168954380382902E-5 2.2610740977444705 0.0 15 4.168954380382902E-5 0.0 4.168954380382902E-5 2.332154769929999 0.0 16 4.168954380382902E-5 0.0 4.168954380382902E-5 2.4673122709420126 0.0 17 4.168954380382902E-5 0.0 4.168954380382902E-5 2.639156570501396 0.0 18 4.168954380382902E-5 0.0 4.168954380382902E-5 2.843518714227766 0.0 19 4.168954380382902E-5 0.0 4.168954380382902E-5 2.967169901149923 0.0 20 4.168954380382902E-5 0.0 4.168954380382902E-5 3.106079461104281 0.0 21 4.168954380382902E-5 0.0 4.168954380382902E-5 3.276422937086726 0.0 22 4.168954380382902E-5 0.0 4.168954380382902E-5 3.4665689463759906 0.0 23 4.168954380382902E-5 0.0 4.168954380382902E-5 3.6625514917977906 0.0 24 4.168954380382902E-5 0.0 4.168954380382902E-5 3.8157605652768622 0.0 25 4.168954380382902E-5 0.0 4.168954380382902E-5 3.955545605651101 4.168954380382902E-5 26 4.168954380382902E-5 0.0 4.168954380382902E-5 4.089452420349 4.168954380382902E-5 27 4.168954380382902E-5 0.0 4.168954380382902E-5 4.232155728789507 4.168954380382902E-5 28 4.168954380382902E-5 0.0 4.168954380382902E-5 4.385448181356186 4.168954380382902E-5 29 4.168954380382902E-5 0.0 4.168954380382902E-5 4.563337464767124 4.168954380382902E-5 30 4.168954380382902E-5 0.0 4.168954380382902E-5 4.7695756379646665 4.168954380382902E-5 31 4.168954380382902E-5 0.0 4.168954380382902E-5 4.950841774423715 4.168954380382902E-5 32 4.168954380382902E-5 0.0 4.168954380382902E-5 5.125270825698935 4.168954380382902E-5 33 4.168954380382902E-5 0.0 4.168954380382902E-5 5.308871576610999 4.168954380382902E-5 34 4.168954380382902E-5 0.0 4.168954380382902E-5 5.501685716703708 8.337908760765804E-5 35 4.168954380382902E-5 0.0 4.168954380382902E-5 5.717137279081896 8.337908760765804E-5 36 4.168954380382902E-5 0.0 4.168954380382902E-5 5.92437600133073 8.337908760765804E-5 37 4.168954380382902E-5 0.0 4.168954380382902E-5 6.129738694108392 8.337908760765804E-5 38 4.168954380382902E-5 0.0 4.168954380382902E-5 6.352861132546485 8.337908760765804E-5 39 4.168954380382902E-5 0.0 4.168954380382902E-5 6.628679154352618 8.337908760765804E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 10085 0.0 42.322758 1 CGCGTCA 60 3.6379788E-12 41.249996 39 CGACGGT 370 0.0 40.135136 28 AATCGCG 40 3.460318E-7 39.375 1 CGGGATC 665 0.0 39.248123 6 TATAGCG 190 0.0 39.07895 1 AGGGACC 3095 0.0 39.038773 6 CGGTCTA 375 0.0 39.0 31 TACGGGA 1195 0.0 38.97489 4 ACGGGAT 1610 0.0 38.85093 5 CGGGATA 990 0.0 38.409096 6 GACCGAT 990 0.0 38.18182 9 TAAGGGA 4825 0.0 38.098446 4 TATGGGA 3580 0.0 37.7095 4 CGCGGAC 30 1.1402921E-4 37.499996 24 CTCGACA 30 1.1402921E-4 37.499996 40 TACCGAT 30 1.1402921E-4 37.499996 36 TTAGGGA 4075 0.0 37.435585 4 TAGGGAT 4560 0.0 37.401318 5 TGCGTAG 175 0.0 37.285713 1 >>END_MODULE