SRR1547912_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547912_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2071338
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40895	1.9743277050872432	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTT	4879	0.23554823017778848	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4134	0.19958114030641066	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTC	3895	0.1880427047637807	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCT	2948	0.1423234643500964	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG	2460	0.11876381353501939	TruSeq Adapter, Index 13 (95% over 21bp)
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2425	0.11707408448065935	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17795	0.0	43.558582	1
TTGCACG	80	0.0	42.187504	1
TAAGACG	65	0.0	41.53846	1
TACGGGA	810	0.0	41.11111	4
TTTAGCG	140	0.0	40.17857	1
ACGGGAT	1160	0.0	38.98707	5
TAGGGAC	2650	0.0	38.88679	5
GCGCGAC	650	0.0	38.76923	9
CGGTTTT	1645	0.0	38.708206	1
TAGGGAT	3325	0.0	38.503757	5
CGAGGGA	1655	0.0	38.338367	4
ATAGGGA	2960	0.0	38.2348	4
AAGGGAT	3575	0.0	37.888115	5
CGATCGA	60	1.5643309E-10	37.500004	10
CGGTCTA	270	0.0	37.5	31
CGACGGT	290	0.0	37.24138	28
CTAGGGA	1520	0.0	37.154606	4
AGGGATC	2275	0.0	36.989014	6
TAAGGGA	2875	0.0	36.93913	4
GCGTTAG	195	0.0	36.923077	1