##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547912_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2071338 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.427424205996317 31.0 31.0 33.0 30.0 34.0 2 31.790046819978198 31.0 31.0 34.0 30.0 34.0 3 31.542836562646947 31.0 31.0 34.0 30.0 34.0 4 35.51397840429713 37.0 35.0 37.0 33.0 37.0 5 35.54388516022011 37.0 35.0 37.0 33.0 37.0 6 35.63183121248198 37.0 35.0 37.0 33.0 37.0 7 35.99126023855112 37.0 35.0 37.0 35.0 37.0 8 36.02733305718333 37.0 35.0 37.0 35.0 37.0 9 37.77995382694664 39.0 38.0 39.0 35.0 39.0 10 37.32679553023215 39.0 37.0 39.0 34.0 39.0 11 37.07856322821287 39.0 37.0 39.0 33.0 39.0 12 36.849385276570025 39.0 35.0 39.0 33.0 39.0 13 36.80403391431046 39.0 35.0 39.0 33.0 39.0 14 37.95923649351289 40.0 37.0 41.0 33.0 41.0 15 38.06862665581378 40.0 37.0 41.0 33.0 41.0 16 38.102827737433486 40.0 37.0 41.0 33.0 41.0 17 37.994354856619246 40.0 36.0 41.0 33.0 41.0 18 37.79957592628533 39.0 36.0 41.0 33.0 41.0 19 37.620516303954254 39.0 36.0 41.0 33.0 41.0 20 37.36864142887351 39.0 35.0 41.0 32.0 41.0 21 37.276428086579784 39.0 35.0 41.0 32.0 41.0 22 37.19051791643855 39.0 35.0 41.0 32.0 41.0 23 37.073872540357975 39.0 35.0 41.0 32.0 41.0 24 37.08408912500036 39.0 35.0 41.0 32.0 41.0 25 37.050316751780734 39.0 35.0 41.0 32.0 41.0 26 36.937851765380636 39.0 35.0 41.0 32.0 41.0 27 36.85982104320975 39.0 35.0 41.0 31.0 41.0 28 36.751296987744155 39.0 35.0 41.0 31.0 41.0 29 36.68085942516383 38.0 35.0 41.0 31.0 41.0 30 36.53594826146192 38.0 35.0 41.0 31.0 41.0 31 36.32769350052961 38.0 35.0 41.0 30.0 41.0 32 36.086008657206115 38.0 35.0 41.0 30.0 41.0 33 35.83540494115398 38.0 35.0 41.0 28.0 41.0 34 35.53387955031965 38.0 35.0 41.0 26.0 41.0 35 35.31617727285455 38.0 35.0 41.0 25.0 41.0 36 35.17128155810399 38.0 35.0 40.0 24.0 41.0 37 35.0701845860019 38.0 34.0 40.0 24.0 41.0 38 34.90687420401692 38.0 34.0 40.0 23.0 41.0 39 34.79943060958665 38.0 34.0 40.0 23.0 41.0 40 34.62324159552907 38.0 34.0 40.0 22.0 41.0 41 34.49315370065146 38.0 34.0 40.0 21.0 41.0 42 34.38995277448683 38.0 34.0 40.0 21.0 41.0 43 34.29054649699856 38.0 33.0 40.0 20.0 41.0 44 34.055592568668175 38.0 33.0 40.0 18.0 41.0 45 33.90538193187206 37.0 33.0 40.0 18.0 41.0 46 33.849296927879465 37.0 33.0 40.0 18.0 41.0 47 33.748038224567885 37.0 33.0 40.0 18.0 41.0 48 33.6172140906023 37.0 33.0 40.0 18.0 41.0 49 33.45607090682448 37.0 33.0 40.0 18.0 41.0 50 33.37748885020214 37.0 33.0 40.0 18.0 41.0 51 33.04120766383854 36.0 32.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 3.0 12 7.0 13 6.0 14 19.0 15 47.0 16 132.0 17 337.0 18 773.0 19 1674.0 20 2911.0 21 4696.0 22 7632.0 23 12286.0 24 19756.0 25 31066.0 26 43164.0 27 48732.0 28 48193.0 29 47877.0 30 51818.0 31 58611.0 32 69906.0 33 87864.0 34 129873.0 35 180031.0 36 154445.0 37 199662.0 38 314574.0 39 555167.0 40 71.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.977193485563436 22.70546863911153 26.9176735037932 20.39966437153183 2 36.20543822398855 23.751845425517224 27.31036653602647 12.73234981446775 3 27.778131816246308 24.07786657706275 35.20830497002421 12.935696636666735 4 24.07950802814413 25.68619896897561 35.71174767227753 14.522545330602732 5 21.5765365189071 29.780460745662946 34.08946294617296 14.553539789256991 6 19.762443406146172 38.04917401216026 31.166279960103083 11.02210262159049 7 82.0734230724295 2.622266380474843 13.055088063850514 2.2492224832451293 8 82.31196453693217 2.068035250644752 12.713038625275065 2.9069615871480172 9 77.00249790232208 4.6356509657042935 14.908479446618564 3.45337168535507 10 34.3502122782472 35.69629872092339 19.06772337493929 10.885765625890125 11 24.006849678806645 23.519000761826415 34.74121558142611 17.732933977940828 12 24.62953897432481 21.00318731177625 35.40383076060015 18.963442953298788 13 21.905068125047674 23.41838946613252 36.14200096749058 18.534541441329228 14 16.608057207466864 28.03516374440096 35.80893123188972 19.54784781624245 15 16.004292877357535 26.86104344148565 39.35673463239703 17.777929048759788 16 19.780837313852206 24.62418011932384 38.37152603775917 17.223456529064787 17 18.858052138279703 25.31807942499003 34.134120071181044 21.689748365549224 18 19.597574128413616 26.337951604228767 34.86046217469095 19.204012092666673 19 21.589378459720237 28.513019120973983 31.512722694219867 18.384879725085913 20 22.90519461333689 27.163456664243114 30.932711126817548 18.998637595602457 21 21.78553186394495 27.062652256657294 33.336374845631184 17.81544103376658 22 20.39058811261127 23.387057061667385 33.470008274844574 22.752346550876776 23 18.468931676047077 27.840024177608868 33.03217533787339 20.65886880847066 24 18.842361797060644 26.488240934120842 35.5938045842832 19.075592684535312 25 21.075942217059698 26.835166447967453 32.46795066763609 19.620940667336765 26 18.863748939091543 28.85057870806213 31.556269425849376 20.729402926996947 27 19.140912781979573 26.385650241534698 33.996865793994026 20.476571182491703 28 18.5343483294373 26.84245642188769 35.30630925517709 19.316885993497923 29 18.58079173944571 25.86922076454929 34.843323494282444 20.706664001722558 30 19.863634037515848 24.77123482502614 35.36945684383717 19.995674293620837 31 21.414708753472393 25.353901680942464 31.85047539319995 21.380914172385193 32 20.93303941703382 25.76928536047714 33.469477217141765 19.828198005347268 33 19.745353003710644 25.491783571778242 32.55407857143547 22.208784853075645 34 17.724050830912194 26.92520486757835 33.78217364814434 21.568570653365118 35 17.80308187268326 25.774306269667242 32.91524608731168 23.50736577033782 36 20.032751776870796 27.391521808608736 30.36056886901124 22.215157545509232 37 18.445468581177963 27.434344370643515 30.87888118694293 23.24130586123559 38 18.801518631918114 28.06929627129903 30.213900387092785 22.915284709690063 39 18.678602912706666 26.559112998458 29.204021748261265 25.55826234057406 40 21.044271866783692 25.519108904485893 31.476224546645692 21.96039468208472 41 18.48220811861705 25.988660469706055 31.637521254377603 23.891610157299294 42 20.57747214602349 27.80618131854869 29.3969405282962 22.219406007131624 43 20.41709271977823 26.817400153910175 30.676065422446747 22.089441703864846 44 21.030271254618995 27.7694417811096 30.33498154333093 20.865305420940476 45 19.761333012767594 27.159304758566684 30.180395473843475 22.898966754822244 46 21.252687876145757 26.825124629587254 29.77481222282409 22.147375271442904 47 20.873802344185254 27.07047328828033 30.40474321428951 21.650981153244906 48 19.83500519953769 26.43373510262449 30.836203458827093 22.895056239010728 49 20.19279325730518 25.79057594656208 30.687700413935342 23.328930382197402 50 18.261481226144646 26.059146310259358 33.49434037322735 22.185032090368644 51 18.46255898361349 26.22039474001829 31.852647901984128 23.464398374384093 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1299.0 1 1919.5 2 2540.0 3 31776.0 4 61012.0 5 42957.5 6 24903.0 7 22030.5 8 19158.0 9 19318.5 10 19479.0 11 19724.5 12 19970.0 13 19356.5 14 18743.0 15 17886.0 16 17029.0 17 16089.0 18 15149.0 19 14709.5 20 14270.0 21 14251.5 22 14233.0 23 14568.0 24 14903.0 25 16428.0 26 20697.0 27 23441.0 28 26963.5 29 30486.0 30 35037.5 31 39589.0 32 44391.0 33 49193.0 34 55776.5 35 62360.0 36 66403.5 37 70447.0 38 76734.5 39 83022.0 40 90525.0 41 98028.0 42 108212.5 43 118397.0 44 128065.0 45 137733.0 46 157956.0 47 178179.0 48 185144.5 49 192110.0 50 180049.0 51 167988.0 52 147552.0 53 127116.0 54 112459.0 55 97802.0 56 89655.0 57 81508.0 58 76579.5 59 71651.0 60 64552.5 61 57454.0 62 49692.0 63 41930.0 64 35535.0 65 29140.0 66 23431.0 67 17722.0 68 14887.5 69 12053.0 70 10325.5 71 8598.0 72 7648.5 73 6699.0 74 5575.0 75 3135.0 76 1819.0 77 1389.5 78 960.0 79 713.0 80 466.0 81 321.5 82 177.0 83 127.0 84 77.0 85 66.0 86 55.0 87 39.0 88 23.0 89 18.5 90 14.0 91 9.5 92 5.0 93 2.5 94 0.0 95 2.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2071338.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.48363926228717 #Duplication Level Percentage of deduplicated Percentage of total 1 72.1767735527682 21.280339545456062 2 7.76577029400022 4.579263398841765 3 3.492772829308948 3.0893896237338945 4 2.1604154251551653 2.547876362078226 5 1.5843107877138667 2.3355623872152833 6 1.2841021721276304 2.2716003131358264 7 1.0704428795249987 2.209238619755929 8 0.9222800153238142 2.1753737016499217 9 0.8447811091182079 2.2416499329152484 >10 8.512973767855046 48.359808804541586 >50 0.14064059642595667 2.6609331622708066 >100 0.038937745017131285 2.0175912172671104 >500 0.0036449761296900043 0.7591577973588883 >1k 0.0019881687980127295 1.4745471508316972 >5k 0.0 0.0 >10k+ 1.6568073316772748E-4 1.9976679829477988 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40895 1.9743277050872432 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTT 4879 0.23554823017778848 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4134 0.19958114030641066 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTC 3895 0.1880427047637807 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCT 2948 0.1423234643500964 No Hit CGCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG 2460 0.11876381353501939 TruSeq Adapter, Index 13 (95% over 21bp) AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 2425 0.11707408448065935 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11514296556139075 0.0 2 0.0 0.0 0.0 0.32602115154552275 0.0 3 0.0 0.0 0.0 0.6050678353798367 0.0 4 0.0 0.0 0.0 0.8978254635409576 0.0 5 0.0 0.0 0.0 1.6628382234092167 0.0 6 0.0 0.0 0.0 3.149413567462191 0.0 7 0.0 0.0 0.0 4.02618983478312 0.0 8 0.0 0.0 0.0 5.560801761952902 0.0 9 0.0 0.0 0.0 6.501015285771805 0.0 10 0.0 0.0 0.0 7.553861320557051 0.0 11 0.0 0.0 0.0 8.310087489342637 0.0 12 0.0 0.0 0.0 8.832310323085851 0.0 13 4.82779729817152E-5 0.0 0.0 9.14862760206205 0.0 14 4.82779729817152E-5 0.0 0.0 9.349946749395802 0.0 15 4.82779729817152E-5 0.0 0.0 9.506898439559357 0.0 16 4.82779729817152E-5 0.0 0.0 9.724632097706893 0.0 17 4.82779729817152E-5 0.0 0.0 9.986009043429899 0.0 18 4.82779729817152E-5 0.0 0.0 10.319996060517404 0.0 19 4.82779729817152E-5 0.0 0.0 10.514652847579681 0.0 20 4.82779729817152E-5 0.0 0.0 10.716599608562195 0.0 21 4.82779729817152E-5 0.0 0.0 10.938919674142994 0.0 22 4.82779729817152E-5 0.0 0.0 11.200344897838981 0.0 23 4.82779729817152E-5 0.0 0.0 11.479198469781368 0.0 24 4.82779729817152E-5 0.0 0.0 11.704849715497906 0.0 25 4.82779729817152E-5 0.0 0.0 11.89578909864059 0.0 26 4.82779729817152E-5 0.0 0.0 12.081417904755284 0.0 27 4.82779729817152E-5 0.0 0.0 12.293165094253087 0.0 28 4.82779729817152E-5 0.0 0.0 12.516402441320539 0.0 29 4.82779729817152E-5 0.0 0.0 12.747219430146117 0.0 30 4.82779729817152E-5 0.0 0.0 13.03099735533264 0.0 31 4.82779729817152E-5 0.0 0.0 13.271325104835618 0.0 32 4.82779729817152E-5 0.0 0.0 13.513487417311902 0.0 33 4.82779729817152E-5 0.0 0.0 13.743435402623811 0.0 34 4.82779729817152E-5 0.0 0.0 13.975217950909025 0.0 35 4.82779729817152E-5 0.0 0.0 14.239877798794788 0.0 36 4.82779729817152E-5 0.0 0.0 14.471998292890875 0.0 37 4.82779729817152E-5 0.0 0.0 14.715657222529591 0.0 38 4.82779729817152E-5 0.0 0.0 14.977227280144525 0.0 39 4.82779729817152E-5 0.0 0.0 15.330815154262607 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 17795 0.0 43.558582 1 TTGCACG 80 0.0 42.187504 1 TAAGACG 65 0.0 41.53846 1 TACGGGA 810 0.0 41.11111 4 TTTAGCG 140 0.0 40.17857 1 ACGGGAT 1160 0.0 38.98707 5 TAGGGAC 2650 0.0 38.88679 5 GCGCGAC 650 0.0 38.76923 9 CGGTTTT 1645 0.0 38.708206 1 TAGGGAT 3325 0.0 38.503757 5 CGAGGGA 1655 0.0 38.338367 4 ATAGGGA 2960 0.0 38.2348 4 AAGGGAT 3575 0.0 37.888115 5 CGATCGA 60 1.5643309E-10 37.500004 10 CGGTCTA 270 0.0 37.5 31 CGACGGT 290 0.0 37.24138 28 CTAGGGA 1520 0.0 37.154606 4 AGGGATC 2275 0.0 36.989014 6 TAAGGGA 2875 0.0 36.93913 4 GCGTTAG 195 0.0 36.923077 1 >>END_MODULE