SRR1547909_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547909_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	918543
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4020	0.4376496255482868	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3790	0.41260997035522556	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	35	1.2115743E-7	45.000004	1
TCGATAG	35	1.2115743E-7	45.000004	1
CGCCTAA	85	0.0	45.000004	30
TAGGACG	35	1.2115743E-7	45.000004	1
CACCGGG	60	0.0	45.000004	3
AGTCGGT	30	2.165023E-6	45.000004	12
ATTTACG	25	3.8901915E-5	45.0	1
ACAACGA	20	7.032547E-4	45.0	14
CTTAACG	20	7.032547E-4	45.0	1
CGGAATA	20	7.032547E-4	45.0	10
CGGGTAT	45	3.8380676E-10	45.0	6
AGGTACG	25	3.8901915E-5	45.0	1
GTCGATG	25	3.8901915E-5	45.0	1
CCCTCCG	20	7.032547E-4	45.0	44
CGAAACG	20	7.032547E-4	45.0	35
CGACGCA	20	7.032547E-4	45.0	14
ACGTTAG	55	1.8189894E-12	45.0	1
TTTGTCG	20	7.032547E-4	45.0	1
CGTGATT	20	7.032547E-4	45.0	13
GCTATTG	50	2.1827873E-11	45.0	1