SRR1547907_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547907_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2338956
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40056	1.712558936551179	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4045	0.1729404058904913	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGCGA	20	7.034785E-4	45.000004	22
CGTTTTT	17930	0.0	43.356106	1
ATTAGCG	135	0.0	40.0	1
CGACGGT	350	0.0	39.857143	28
ACGGGAT	1120	0.0	39.57589	5
CTATGCG	40	3.4602635E-7	39.375004	1
CGGTTTT	1790	0.0	38.71508	1
CGGTCTA	360	0.0	38.125	31
TCGTCCC	475	0.0	37.894737	38
TAAGGGA	3200	0.0	37.82813	4
ATAGGGA	3505	0.0	37.74608	4
TCGATAG	185	0.0	37.7027	1
ACGTAGG	300	0.0	37.5	2
TACGGGA	890	0.0	37.41573	4
CGAGGGA	1640	0.0	37.317074	4
ACGGGAC	780	0.0	37.211536	5
AGGGATT	4070	0.0	37.03931	6
TAGGGAT	4090	0.0	37.023228	5
GGGCGAT	3035	0.0	36.919277	7
AAGGGAT	3525	0.0	36.89362	5