##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547905_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3498114 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43271945968599 31.0 31.0 33.0 30.0 34.0 2 31.851296727322207 31.0 31.0 34.0 30.0 34.0 3 31.920455708418878 33.0 31.0 34.0 30.0 34.0 4 35.71173066400924 37.0 35.0 37.0 33.0 37.0 5 35.6367070941656 37.0 35.0 37.0 33.0 37.0 6 35.6739548796866 37.0 35.0 37.0 33.0 37.0 7 35.97563286959773 37.0 35.0 37.0 35.0 37.0 8 35.99468685125756 37.0 35.0 37.0 35.0 37.0 9 37.72970892315116 39.0 38.0 39.0 35.0 39.0 10 37.25855217983176 39.0 37.0 39.0 34.0 39.0 11 37.018092892341414 39.0 37.0 39.0 33.0 39.0 12 36.524946013766275 39.0 35.0 39.0 32.0 39.0 13 36.35780995130519 39.0 35.0 39.0 32.0 39.0 14 37.366756200626966 40.0 35.0 41.0 32.0 41.0 15 37.539047612513485 40.0 35.0 41.0 32.0 41.0 16 37.62742552129519 40.0 35.0 41.0 33.0 41.0 17 37.53679011032802 40.0 35.0 41.0 32.0 41.0 18 37.43819126535041 39.0 36.0 41.0 32.0 41.0 19 37.37758031899475 39.0 35.0 41.0 32.0 41.0 20 37.23020404709509 39.0 35.0 41.0 32.0 41.0 21 37.11663170497016 39.0 35.0 41.0 32.0 41.0 22 37.04411434275727 39.0 35.0 41.0 32.0 41.0 23 36.94953509233833 39.0 35.0 41.0 31.0 41.0 24 36.99337928952573 39.0 35.0 41.0 32.0 41.0 25 36.95957278693604 39.0 35.0 41.0 31.0 41.0 26 36.85619708219915 39.0 35.0 41.0 31.0 41.0 27 36.77901149019157 39.0 35.0 41.0 31.0 41.0 28 36.70716591854925 39.0 35.0 41.0 31.0 41.0 29 36.70382726234765 39.0 35.0 41.0 31.0 41.0 30 36.604902527476234 38.0 35.0 41.0 31.0 41.0 31 36.456041741349765 38.0 35.0 41.0 30.0 41.0 32 36.33512801469592 38.0 35.0 41.0 30.0 41.0 33 36.22763494843221 38.0 35.0 41.0 30.0 41.0 34 36.068865394323915 38.0 35.0 41.0 30.0 41.0 35 35.99158575163646 38.0 35.0 41.0 29.0 41.0 36 35.899460966680905 38.0 35.0 41.0 29.0 41.0 37 35.809879266370395 38.0 35.0 40.0 29.0 41.0 38 35.6896822116146 38.0 35.0 40.0 28.0 41.0 39 35.585034964555184 38.0 35.0 40.0 27.0 41.0 40 35.42744804771943 38.0 34.0 40.0 27.0 41.0 41 35.354308350156685 38.0 34.0 40.0 27.0 41.0 42 35.29749602214222 38.0 34.0 40.0 27.0 41.0 43 35.243977754870194 38.0 34.0 40.0 26.0 41.0 44 35.06758041618998 38.0 34.0 40.0 26.0 41.0 45 34.93338267420673 37.0 34.0 40.0 26.0 41.0 46 34.89744044933927 37.0 34.0 40.0 26.0 41.0 47 34.81525244746169 37.0 34.0 40.0 25.0 41.0 48 34.70433153407808 37.0 34.0 40.0 25.0 41.0 49 34.567815685823845 37.0 34.0 40.0 24.0 41.0 50 34.49169009357614 37.0 34.0 40.0 24.0 41.0 51 34.157884505765104 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 6.0 11 7.0 12 14.0 13 18.0 14 50.0 15 114.0 16 289.0 17 704.0 18 1421.0 19 2666.0 20 4800.0 21 7616.0 22 11464.0 23 16872.0 24 24954.0 25 36065.0 26 47523.0 27 55507.0 28 61330.0 29 69611.0 30 81811.0 31 98952.0 32 122099.0 33 160319.0 34 267066.0 35 356834.0 36 255641.0 37 341245.0 38 537699.0 39 935292.0 40 121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.596446542336814 23.982265872410107 28.948484812101604 13.472802773151477 2 31.299065725130742 25.738755226387706 29.172605581178885 13.789573467302665 3 29.544491688950103 25.333251003254897 31.262617513322894 13.859639794472105 4 25.97179508729561 28.094396008820755 30.484369577435157 15.44943932644848 5 23.457383035544296 31.921429661812052 28.87756087994845 15.7436264226952 6 21.824560320218268 40.90369839290543 26.37352584850008 10.898215438376223 7 88.6068321386896 3.2476357259940642 6.276925223134524 1.8686069121818214 8 88.85256455335646 2.7161207439208668 6.095084379754347 2.3362303229683192 9 83.60302151387862 5.633178335525944 7.819127678514766 2.9446724720806694 10 41.53521011607969 34.88193923925864 13.32938263304169 10.253468011619976 11 33.71119408915776 22.010660601684222 26.428241046461036 17.849904262696985 12 31.40758134240336 20.51971433749729 29.367967996468952 18.704736323630392 13 24.512980423165168 27.153088778696176 29.48568857390011 18.848242224238547 14 18.96782094580108 30.608407844913 30.94335976471893 19.480411444566986 15 18.301747741783146 26.450167147211324 37.38445916856912 17.86362594243641 16 23.286205080794968 24.17314015495207 34.7854872654236 17.75516749882937 17 22.84902664693032 24.113393674419985 28.078387382458093 24.959192296191603 18 24.23180033583811 25.535931647739325 30.41433183709851 19.817936179324057 19 26.18902642967039 27.392760784811472 26.252117569638955 20.166095215879185 20 27.015900568134715 26.723600202852165 26.932026800727478 19.328472428285643 21 25.40185940195202 26.079710381079636 29.71409736789596 18.804332849072384 22 24.229170347221388 22.724902618954097 29.6581815229578 23.38774551086671 23 21.63651613412256 26.69421293874356 29.246216675614345 22.423054251519535 24 21.79182839667318 25.687985011351834 32.266987296583245 20.253199295391745 25 22.223975547966702 26.17093096451402 29.489719317323566 22.11537417019571 26 20.427836256908723 29.15708293097366 26.985055375553795 23.430025436563817 27 19.980881126229736 27.946659256959606 30.180834586865952 21.89162502994471 28 18.559858255048294 27.717735899973526 31.995469558739366 21.726936286238814 29 20.14153912651217 26.289451973263304 31.431394174117827 22.137614726106698 30 21.723963255628604 25.923569100378092 30.517387369308146 21.835080274685158 31 24.763715533570373 25.892009236977408 27.35285356623598 21.991421663216233 32 25.394198130764178 26.655363432981318 26.67929061202694 21.27114782422757 33 23.619356030135098 26.06973357643576 27.315547749444413 22.99536264398473 34 19.81367674123828 27.288847647618113 29.736509444803687 23.160966166339918 35 20.16392261658711 27.43132442224582 29.205594786219084 23.199158174947986 36 24.22205222585656 26.925623350182416 27.505735947999412 21.346588475961617 37 20.864843169776627 29.084872591344933 28.24807882190232 21.80220541697612 38 21.453731925260296 28.72753718146407 27.20294421508276 22.61578667819288 39 20.969356630458584 27.60315987414933 27.807126926109326 23.620356569282762 40 23.001194357873985 25.296945725611003 28.288729298130367 23.41313061838465 41 19.69501279832504 25.12385245306471 29.719900494952423 25.461234253657828 42 21.64020383555253 25.978227124673463 27.986737996531847 24.394831043242156 43 21.473742708213624 26.071906175727833 27.91032539248292 24.54402572357562 44 21.127213121127557 27.453393457160058 28.15560041782515 23.263793003887237 45 20.460825461948925 28.3420151544518 26.579093763096346 24.618065620502936 46 21.74005764248964 27.80612638696166 27.2750973810459 23.1787185895028 47 20.796349118410664 26.67208673016374 29.098079708094133 23.433484443331466 48 21.392527516255903 25.91101948078307 29.635540751387744 23.060912251573278 49 21.683398539898928 24.63358827070816 29.584656189020713 24.0983570003722 50 20.215178807780422 27.042743604124965 29.28426575005846 23.457811838036154 51 19.346310611946897 27.763617766602234 28.088907336924983 24.80116428452589 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1638.0 1 3003.5 2 4369.0 3 18082.0 4 31795.0 5 23167.5 6 14540.0 7 13302.5 8 12065.0 9 12424.0 10 12783.0 11 12814.0 12 12845.0 13 12764.0 14 12683.0 15 12318.0 16 11953.0 17 11951.5 18 11950.0 19 12398.0 20 12846.0 21 14277.5 22 15709.0 23 17887.0 24 20065.0 25 22941.5 26 31545.0 27 37272.0 28 42293.0 29 47314.0 30 54977.5 31 62641.0 32 73745.5 33 84850.0 34 95994.5 35 107139.0 36 114290.5 37 121442.0 38 132660.5 39 143879.0 40 163610.0 41 183341.0 42 207328.5 43 231316.0 44 240165.5 45 249015.0 46 258777.0 47 268539.0 48 277111.0 49 285683.0 50 278330.5 51 270978.0 52 249988.0 53 228998.0 54 211610.0 55 194222.0 56 187226.5 57 180231.0 58 171457.0 59 162683.0 60 147587.5 61 132492.0 62 117799.5 63 103107.0 64 88146.0 65 73185.0 66 61518.0 67 49851.0 68 40522.0 69 31193.0 70 25505.5 71 19818.0 72 16488.0 73 13158.0 74 9952.5 75 5559.0 76 4371.0 77 3225.5 78 2080.0 79 1471.5 80 863.0 81 598.0 82 333.0 83 249.0 84 165.0 85 124.5 86 84.0 87 57.0 88 30.0 89 21.5 90 13.0 91 12.0 92 11.0 93 10.0 94 9.0 95 5.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3498114.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.41157990259094 #Duplication Level Percentage of deduplicated Percentage of total 1 77.15124713547392 14.976275983547927 2 8.248623697519129 3.202376359815954 3 2.8578722923578197 1.6642744906351365 4 1.4287445330810702 1.1093675465717272 5 0.8606636834211354 0.8353420929993802 6 0.633865256606341 0.7382595645654179 7 0.49754854969856893 0.6760742399524409 8 0.3939500060437288 0.6117753615955221 9 0.3216959738507745 0.5620164390671504 >10 4.3811655294784435 22.020923657135768 >50 2.5923470984941996 36.42314773336284 >100 0.6255053288844092 15.286667616831023 >500 0.004213013834009652 0.5685549654994362 >1k 0.002407436476576944 0.7692987381223492 >5k 0.0 0.0 >10k+ 1.50464779786059E-4 0.5556452102980207 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19024 0.5438359070058895 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.8586832790469378E-5 0.0 0.0 0.054057700806777596 0.0 2 2.8586832790469378E-5 0.0 0.0 0.17983976508484287 0.0 3 2.8586832790469378E-5 0.0 0.0 0.28238073430425653 0.0 4 2.8586832790469378E-5 0.0 0.0 0.463964296189318 0.0 5 2.8586832790469378E-5 0.0 0.0 0.8587198701929096 0.0 6 2.8586832790469378E-5 0.0 0.0 1.3756269807101769 0.0 7 2.8586832790469378E-5 0.0 0.0 1.6811058759091329 0.0 8 2.8586832790469378E-5 0.0 0.0 2.3594142443613904 0.0 9 2.8586832790469378E-5 0.0 0.0 2.6755846150239817 0.0 10 2.8586832790469378E-5 0.0 0.0 3.1540424354380674 0.0 11 2.8586832790469378E-5 0.0 0.0 3.6477942113950546 0.0 12 2.8586832790469378E-5 0.0 0.0 4.033259064741744 0.0 13 2.8586832790469378E-5 0.0 0.0 4.208667870744064 0.0 14 2.8586832790469378E-5 0.0 0.0 4.303033005785403 0.0 15 2.8586832790469378E-5 0.0 0.0 4.41066243124152 0.0 16 2.8586832790469378E-5 0.0 0.0 4.6158015433459285 0.0 17 2.8586832790469378E-5 0.0 0.0 4.864564162288593 0.0 18 2.8586832790469378E-5 0.0 0.0 5.170529033644987 0.0 19 2.8586832790469378E-5 0.0 0.0 5.344937300499641 0.0 20 2.8586832790469378E-5 0.0 0.0 5.538184290163214 0.0 21 2.8586832790469378E-5 0.0 0.0 5.782230081695451 0.0 22 2.8586832790469378E-5 0.0 0.0 6.049088165794482 0.0 23 2.8586832790469378E-5 0.0 0.0 6.325151210052045 0.0 24 2.8586832790469378E-5 0.0 0.0 6.532634442445272 0.0 25 2.8586832790469378E-5 0.0 0.0 6.715761693301019 0.0 26 2.8586832790469378E-5 0.0 0.0 6.892914296103558 0.0 27 2.8586832790469378E-5 0.0 0.0 7.089477358370825 0.0 28 2.8586832790469378E-5 0.0 0.0 7.2938160391571 0.0 29 2.8586832790469378E-5 0.0 0.0 7.516021490437419 0.0 30 2.8586832790469378E-5 0.0 0.0 7.801260908020722 0.0 31 2.8586832790469378E-5 0.0 0.0 8.044048878910179 0.0 32 2.8586832790469378E-5 0.0 0.0 8.267226282505373 0.0 33 2.8586832790469378E-5 0.0 0.0 8.48442903804736 0.0 34 2.8586832790469378E-5 0.0 0.0 8.72504440964474 0.0 35 2.8586832790469378E-5 0.0 0.0 9.000650064577655 0.0 36 2.8586832790469378E-5 0.0 0.0 9.233918620147886 0.0 37 2.8586832790469378E-5 0.0 0.0 9.481080376454283 0.0 38 2.8586832790469378E-5 0.0 0.0 9.774209759887757 0.0 39 2.8586832790469378E-5 0.0 0.0 10.238202642909865 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 20 7.0352666E-4 45.0 21 CGTTTTT 9795 0.0 40.980087 1 TACGGGA 1500 0.0 40.649998 4 CGTAAGG 575 0.0 40.304348 2 TATAGCG 190 0.0 40.263157 1 CGAGGGA 2575 0.0 39.40777 4 ACGGGAT 1680 0.0 39.375 5 CGGTCTA 465 0.0 38.70968 31 CGTCGGT 35 6.2519503E-6 38.57143 16 ACCGTTC 335 0.0 38.283585 45 TAAGGGA 4520 0.0 37.632744 4 TATGGGA 4000 0.0 37.631252 4 AACGGGA 1430 0.0 37.604897 4 TAGGGAT 5255 0.0 37.507133 5 GGGCGAT 4105 0.0 37.490864 7 AGGGCGA 2215 0.0 37.17833 6 TAGGGAC 4165 0.0 37.004803 5 AAGGGAT 5615 0.0 36.865536 5 GACCGAT 1040 0.0 36.778847 9 GTAGGGA 4700 0.0 36.718086 4 >>END_MODULE