##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547899_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1911984 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4784443802877 31.0 31.0 33.0 30.0 34.0 2 31.84619850375317 31.0 31.0 34.0 30.0 34.0 3 31.59635750089959 31.0 31.0 34.0 30.0 34.0 4 35.552198658566184 37.0 35.0 37.0 33.0 37.0 5 35.59275862141106 37.0 35.0 37.0 33.0 37.0 6 35.68350310462849 37.0 35.0 37.0 33.0 37.0 7 36.03486430848794 37.0 35.0 37.0 35.0 37.0 8 36.078072829061334 37.0 35.0 37.0 35.0 37.0 9 37.84703219273801 39.0 38.0 39.0 35.0 39.0 10 37.385519439493216 39.0 37.0 39.0 35.0 39.0 11 37.134063360362845 39.0 37.0 39.0 33.0 39.0 12 36.788947501652736 39.0 35.0 39.0 33.0 39.0 13 36.68698012117256 39.0 35.0 39.0 33.0 39.0 14 37.75728667185499 40.0 36.0 41.0 33.0 41.0 15 37.909700081172225 40.0 36.0 41.0 33.0 41.0 16 37.97749771964619 40.0 36.0 41.0 33.0 41.0 17 37.889077523661285 40.0 36.0 41.0 33.0 41.0 18 37.707264809747365 39.0 36.0 41.0 33.0 41.0 19 37.53063310153223 39.0 36.0 41.0 33.0 41.0 20 37.290444376103565 39.0 35.0 41.0 32.0 41.0 21 37.18468146176956 39.0 35.0 41.0 32.0 41.0 22 37.115923041197 39.0 35.0 41.0 32.0 41.0 23 37.025783688566435 39.0 35.0 41.0 32.0 41.0 24 37.030621072142864 39.0 35.0 41.0 32.0 41.0 25 36.99370601427627 39.0 35.0 41.0 32.0 41.0 26 36.90547253533502 39.0 35.0 41.0 32.0 41.0 27 36.83649078653378 39.0 35.0 41.0 32.0 41.0 28 36.75202564456606 38.0 35.0 41.0 31.0 41.0 29 36.709575498539735 38.0 35.0 41.0 31.0 41.0 30 36.58085109498824 38.0 35.0 41.0 31.0 41.0 31 36.36314163716851 38.0 35.0 41.0 31.0 41.0 32 36.10143547226337 38.0 35.0 41.0 30.0 41.0 33 35.84467861655746 38.0 35.0 41.0 29.0 41.0 34 35.53135486489427 38.0 35.0 41.0 26.0 41.0 35 35.30651616331517 38.0 35.0 41.0 25.0 41.0 36 35.15009905940636 38.0 34.0 41.0 24.0 41.0 37 35.015297199139745 38.0 34.0 40.0 23.0 41.0 38 34.85037322488054 38.0 34.0 40.0 23.0 41.0 39 34.74214428572624 38.0 34.0 40.0 23.0 41.0 40 34.59907823496431 38.0 34.0 40.0 22.0 41.0 41 34.50801418840325 38.0 34.0 40.0 21.0 41.0 42 34.443259985439205 38.0 34.0 40.0 21.0 41.0 43 34.3936262018929 38.0 34.0 40.0 21.0 41.0 44 34.21333442120854 38.0 33.0 40.0 20.0 41.0 45 34.09200024686399 37.0 33.0 40.0 20.0 41.0 46 34.061672064201375 37.0 33.0 40.0 20.0 41.0 47 33.98312642783622 37.0 33.0 40.0 20.0 41.0 48 33.8810068494297 37.0 33.0 40.0 20.0 41.0 49 33.74885093180696 37.0 33.0 40.0 19.0 41.0 50 33.684067439894896 37.0 33.0 40.0 19.0 41.0 51 33.36927714876275 36.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 5.0 13 7.0 14 21.0 15 48.0 16 144.0 17 341.0 18 808.0 19 1574.0 20 2824.0 21 4570.0 22 6987.0 23 11058.0 24 18013.0 25 28704.0 26 39751.0 27 43310.0 28 42394.0 29 42117.0 30 45620.0 31 52130.0 32 62737.0 33 79738.0 34 129460.0 35 181341.0 36 136999.0 37 178175.0 38 281772.0 39 521260.0 40 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.487424580958837 23.982052151064025 28.15635486489427 19.37416840308287 2 36.00500841011222 23.400091214152418 27.694374011498002 12.900526364237358 3 27.16079214052001 24.292096586582314 35.92012276253358 12.626988510364104 4 23.94413342371066 26.86256788759739 35.53105046904158 13.662248219650374 5 21.78653168645763 30.447378220738248 34.28323667980485 13.48285341299927 6 19.878513627729102 38.42223575092679 31.173168813128143 10.526081808215968 7 83.60598205842726 2.7102737261399676 12.050571552900024 1.633172662532741 8 84.49647068176303 1.9895040962685882 11.724470497661068 1.7895547243073164 9 79.86400513811832 4.512433158436472 13.07165750341007 2.5519042000351466 10 35.593812500523015 36.49627821153315 18.1289173967983 9.780991891145533 11 27.34698616724826 23.708252788726266 32.72020058745262 16.22456045657286 12 26.6969284261793 22.302853998778232 33.62899480330379 17.371222771738676 13 22.351703779947947 26.047184495267743 34.43538230445443 17.16572942032988 14 17.02169055807998 29.837278973045798 35.050502514665396 18.09052795420882 15 16.491665202219266 26.586414949079074 40.30572431568465 16.616195533017013 16 21.034956359467444 25.02076377208177 37.713966225658794 16.23031364279199 17 20.151110051130136 24.83749864015598 33.28652331818676 21.724867990527116 18 21.645055607159893 25.70230713227726 34.86477920317325 17.787858057389602 19 22.273251240596156 27.990976911940685 31.65183390655989 18.083937940903272 20 23.654591251809638 27.54421585117867 31.209256981229966 17.591935915781722 21 21.748874467568765 26.862358680825782 34.60923313165801 16.779533719947448 22 20.976012351567796 23.69407902995004 34.667183407392535 20.662725211089633 23 18.32965129415309 27.902639352630565 34.07329768449945 19.694411668716892 24 18.773274253341032 27.285897789939668 36.19094092837597 17.749887028343334 25 20.071925288077725 27.897356881647546 33.32904459451543 18.701673235759294 26 18.639434221206873 29.527339140913313 31.54780583937941 20.285420798500407 27 17.995652683286053 28.207819730709044 34.32868685093599 19.46784073506891 28 16.636488589862676 28.272464623134923 35.96348086594867 19.127565921053733 29 17.67049305851932 27.15482974752927 35.573937857220564 19.60073933673085 30 19.690279834977698 26.42987598222579 35.53654214679621 18.3433020360003 31 22.05039372714416 26.726374279282673 31.72641612063699 19.496815872936175 32 21.424760876660056 27.645524230328288 32.35157825588499 18.578136637126672 33 20.62365584649244 27.121095155608 31.96365659963682 20.291592398262747 34 17.673055841471477 28.094272755420548 33.864613929823676 20.368057473284296 35 18.021175909421835 28.530521175909424 33.4627800232638 19.98552289140495 36 22.153271157080813 28.274347484079364 30.747171524447904 18.82520983439192 37 19.989393216679638 29.11964744474849 31.624689327944168 19.266270010627704 38 20.012092151398754 29.867980066778806 30.128913212662866 19.991014569159574 39 20.073651243943463 28.15635486489427 30.239740499920504 21.530253391241768 40 22.057611360764525 27.143689486941312 30.650988711202604 20.147710441091558 41 19.013495928836225 27.095205817621903 31.063387559728532 22.82791069381334 42 20.64557025581804 28.2145143474004 29.83539611210136 21.304519284680207 43 20.77282027464665 27.98062117674625 29.9814747403744 21.265083808232703 44 20.578310278747104 29.326082226629513 29.68612708056134 20.409480414062042 45 19.46825914861212 29.533196930518248 28.908400907120562 22.09014301374907 46 20.928313207641907 28.597728851287457 29.49658574548741 20.97737219558323 47 19.82537510774149 28.55034351751897 31.287134201959848 20.337147172779687 48 20.290127950861514 28.084910752391234 30.843511242771903 20.781450053975348 49 20.637986510347368 26.9200474480958 30.590894066059132 21.851071975497703 50 18.798169859162 28.417026502313824 31.78499401668633 20.99980962183784 51 18.401252311734826 28.734079364680877 30.719242420438665 22.145425903145632 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1174.0 1 1821.0 2 2468.0 3 28568.5 4 54669.0 5 38388.5 6 22108.0 7 19429.0 8 16750.0 9 17489.0 10 18228.0 11 18891.5 12 19555.0 13 19484.0 14 19413.0 15 18543.5 16 17674.0 17 16697.5 18 15721.0 19 15498.5 20 15276.0 21 15147.0 22 15018.0 23 15587.5 24 16157.0 25 17528.0 26 21223.0 27 23547.0 28 26995.0 29 30443.0 30 35218.5 31 39994.0 32 44459.5 33 48925.0 34 55649.0 35 62373.0 36 67993.5 37 73614.0 38 79398.0 39 85182.0 40 94240.0 41 103298.0 42 114634.5 43 125971.0 44 131008.0 45 136045.0 46 144372.5 47 152700.0 48 155967.0 49 159234.0 50 150149.0 51 141064.0 52 128872.0 53 116680.0 54 104178.5 55 91677.0 56 82837.5 57 73998.0 58 67908.0 59 61818.0 60 52988.0 61 44158.0 62 38698.5 63 33239.0 64 27678.0 65 22117.0 66 17709.0 67 13301.0 68 10380.5 69 7460.0 70 6024.0 71 4588.0 72 3774.0 73 2960.0 74 2513.5 75 1651.0 76 1235.0 77 983.0 78 731.0 79 495.0 80 259.0 81 183.0 82 107.0 83 79.0 84 51.0 85 37.0 86 23.0 87 15.5 88 8.0 89 6.0 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1911984.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.745832650094666 #Duplication Level Percentage of deduplicated Percentage of total 1 73.67258628721038 20.441072500245983 2 7.94025074487177 4.406177367340033 3 3.3092597831578896 2.7545450441756216 4 2.005846142103219 2.2261548552253574 5 1.3550735072705347 1.8798821380652548 6 1.0259925262242902 1.708021015972021 7 0.8295129379928425 1.6110869011046438 8 0.7102843658759596 1.5765944919658388 9 0.6380945122605055 1.5934017196911388 >10 8.043560460932571 49.40931555364288 >50 0.42975155808722765 7.294002682251491 >100 0.035196383216493606 1.7304564048912552 >500 0.0026779612978465967 0.5407612774366916 >1k 0.0017215465486156694 0.8538391825892132 >5k 0.0 0.0 >10k+ 1.912829498461855E-4 1.974688865402589 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37207 1.945989087774793 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3969 0.2075854191248462 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTC 2416 0.12636089004928913 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTT 2246 0.11746960225608581 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.2301692901195824E-5 0.0 0.0 0.06658005506322229 0.0 2 5.2301692901195824E-5 0.0 0.0 0.1994263550322597 0.0 3 5.2301692901195824E-5 0.0 0.0 0.38253458187934625 0.0 4 5.2301692901195824E-5 0.0 0.0 0.5259981255073264 0.0 5 5.2301692901195824E-5 0.0 0.0 0.9778847521736583 0.0 6 5.2301692901195824E-5 0.0 0.0 1.710369961254906 0.0 7 5.2301692901195824E-5 0.0 0.0 2.1736583569736987 0.0 8 5.2301692901195824E-5 0.0 0.0 2.9324513175842477 0.0 9 5.2301692901195824E-5 0.0 0.0 3.4326647084912842 0.0 10 5.2301692901195824E-5 0.0 0.0 4.029531627879731 0.0 11 5.2301692901195824E-5 0.0 0.0 4.569808115549084 0.0 12 5.2301692901195824E-5 0.0 0.0 4.951244361877505 0.0 13 5.2301692901195824E-5 0.0 0.0 5.163484631670558 0.0 14 5.2301692901195824E-5 0.0 0.0 5.302711738173541 0.0 15 5.2301692901195824E-5 0.0 0.0 5.427137465585486 0.0 16 5.2301692901195824E-5 0.0 0.0 5.618561661603863 0.0 17 5.2301692901195824E-5 0.0 0.0 5.849735144227148 0.0 18 5.2301692901195824E-5 0.0 0.0 6.142520021088043 0.0 19 5.2301692901195824E-5 0.0 0.0 6.316109339827111 0.0 20 5.2301692901195824E-5 0.0 0.0 6.499479075138704 0.0 21 5.2301692901195824E-5 0.0 0.0 6.709208863672499 0.0 22 5.2301692901195824E-5 0.0 0.0 6.940068536138377 0.0 23 5.2301692901195824E-5 0.0 0.0 7.190018326513193 3.1381015740717495E-4 24 5.2301692901195824E-5 0.0 0.0 7.376160051548548 3.1381015740717495E-4 25 5.2301692901195824E-5 0.0 0.0 7.537510774148737 3.1381015740717495E-4 26 5.2301692901195824E-5 0.0 0.0 7.693579025765906 3.1381015740717495E-4 27 5.2301692901195824E-5 0.0 0.0 7.881969723596013 3.1381015740717495E-4 28 5.2301692901195824E-5 0.0 0.0 8.062149055640633 3.1381015740717495E-4 29 5.2301692901195824E-5 0.0 0.0 8.276167582992326 3.1381015740717495E-4 30 5.2301692901195824E-5 0.0 0.0 8.533282705294605 3.1381015740717495E-4 31 5.2301692901195824E-5 0.0 0.0 8.734225809421 3.1381015740717495E-4 32 5.2301692901195824E-5 0.0 0.0 8.94066059130202 3.1381015740717495E-4 33 5.2301692901195824E-5 0.0 0.0 9.139563929405266 3.1381015740717495E-4 34 5.2301692901195824E-5 0.0 0.0 9.347567762073323 3.1381015740717495E-4 35 5.2301692901195824E-5 0.0 0.0 9.577172193909572 3.1381015740717495E-4 36 5.2301692901195824E-5 0.0 0.0 9.777592281106955 3.1381015740717495E-4 37 5.2301692901195824E-5 0.0 0.0 9.987845086569761 3.1381015740717495E-4 38 5.2301692901195824E-5 0.0 0.0 10.240357659896736 3.1381015740717495E-4 39 1.0460338580239165E-4 0.0 0.0 10.624879706106327 3.1381015740717495E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGTA 25 3.89178E-5 45.000004 43 CGTTTTT 16215 0.0 43.695652 1 CTATGCG 75 0.0 42.0 1 CGGTTTT 1505 0.0 41.860466 1 ATAACGC 65 0.0 41.538464 11 AACGGGA 870 0.0 40.344826 4 TACGTAG 95 0.0 40.263157 1 CGCGAGG 175 0.0 39.857143 2 TACGGGA 820 0.0 39.786587 4 CGGTCTA 200 0.0 39.375004 31 TAGGGAC 2245 0.0 39.287308 5 TTACGAG 115 0.0 39.130432 1 CACGACC 560 0.0 38.973213 27 CGAACGG 110 0.0 38.863636 2 CGGGTAT 145 0.0 38.793102 6 TAAGGGA 2715 0.0 38.370167 4 GCGAGAC 575 0.0 38.347828 21 CGAGACA 570 0.0 38.289474 22 TAGGGAT 3210 0.0 38.13084 5 GTTAGCG 130 0.0 38.076927 1 >>END_MODULE