##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547898_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2541772 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.477350053427294 31.0 31.0 33.0 30.0 34.0 2 31.862769359328848 31.0 31.0 34.0 30.0 34.0 3 31.758855239573023 33.0 31.0 34.0 30.0 34.0 4 35.627666446872496 37.0 35.0 37.0 33.0 37.0 5 35.609276127048375 37.0 35.0 37.0 33.0 37.0 6 35.680193974911994 37.0 35.0 37.0 33.0 37.0 7 36.01767861161426 37.0 35.0 37.0 35.0 37.0 8 36.0577726877155 37.0 35.0 37.0 35.0 37.0 9 37.8170996454442 39.0 38.0 39.0 35.0 39.0 10 37.37150814471164 39.0 37.0 39.0 35.0 39.0 11 37.06316026771874 39.0 37.0 39.0 33.0 39.0 12 36.55490657698645 39.0 35.0 39.0 33.0 39.0 13 36.37540345868945 39.0 35.0 39.0 32.0 39.0 14 37.33178467620227 40.0 35.0 41.0 32.0 41.0 15 37.55362322033605 40.0 35.0 41.0 32.0 41.0 16 37.663868356406475 40.0 35.0 41.0 33.0 41.0 17 37.62552738797972 40.0 35.0 41.0 33.0 41.0 18 37.48310273305395 39.0 36.0 41.0 33.0 41.0 19 37.3668287320814 39.0 35.0 41.0 32.0 41.0 20 37.15113235962942 39.0 35.0 41.0 32.0 41.0 21 37.057221497443514 39.0 35.0 41.0 32.0 41.0 22 36.99692812730646 39.0 35.0 41.0 32.0 41.0 23 36.921088909626825 38.0 35.0 41.0 32.0 41.0 24 36.91204915311051 38.0 35.0 41.0 32.0 41.0 25 36.85479736184048 38.0 35.0 41.0 32.0 41.0 26 36.7477295367169 38.0 35.0 41.0 32.0 41.0 27 36.66844075707813 38.0 35.0 41.0 31.0 41.0 28 36.595855568477425 38.0 35.0 41.0 31.0 41.0 29 36.57873522880888 38.0 35.0 41.0 31.0 41.0 30 36.47142780705744 38.0 35.0 40.0 31.0 41.0 31 36.25905352643746 38.0 35.0 40.0 30.0 41.0 32 36.045362054503705 38.0 35.0 40.0 30.0 41.0 33 35.866076107534425 38.0 35.0 40.0 30.0 41.0 34 35.63486614849798 38.0 35.0 40.0 29.0 41.0 35 35.4866577332664 38.0 35.0 40.0 27.0 41.0 36 35.34492236125034 38.0 35.0 40.0 26.0 41.0 37 35.22846148277658 38.0 34.0 40.0 26.0 41.0 38 35.0900155482081 38.0 34.0 40.0 25.0 41.0 39 35.009295090196915 38.0 34.0 40.0 24.0 41.0 40 34.873199091027836 38.0 34.0 40.0 24.0 41.0 41 34.790429668750775 38.0 34.0 40.0 23.0 41.0 42 34.73247403779725 37.0 34.0 40.0 23.0 41.0 43 34.663441488851085 37.0 34.0 40.0 23.0 41.0 44 34.47726389306358 37.0 34.0 40.0 23.0 41.0 45 34.34740055362951 37.0 34.0 40.0 23.0 41.0 46 34.338210114833274 37.0 34.0 40.0 23.0 41.0 47 34.2626856382083 37.0 33.0 40.0 23.0 41.0 48 34.163210547602226 36.0 33.0 40.0 23.0 41.0 49 34.031336406255164 36.0 33.0 40.0 23.0 41.0 50 33.96112869289614 36.0 33.0 40.0 22.0 41.0 51 33.67599965693225 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 7.0 12 4.0 13 7.0 14 35.0 15 79.0 16 192.0 17 486.0 18 1089.0 19 2101.0 20 3765.0 21 6004.0 22 9261.0 23 14235.0 24 21338.0 25 32751.0 26 44060.0 27 49972.0 28 51075.0 29 54262.0 30 60891.0 31 71567.0 32 87674.0 33 114747.0 34 194803.0 35 282217.0 36 187405.0 37 227283.0 38 356893.0 39 667463.0 40 103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.332314621453065 23.939912785253753 29.062402135203314 15.665370458089868 2 33.3901309794899 25.13577142245646 28.865885689196357 12.608211908857287 3 28.029146595367326 24.755957654738506 33.99112902337424 13.223766726519923 4 24.646624480873975 26.82691445180764 33.98998808705108 14.536472980267309 5 22.993879860192024 31.40608205614036 32.23038887831009 13.369649205357522 6 20.74017653825756 39.95496055507732 28.962865276665255 10.341997629999858 7 86.06165305149321 3.3111152377160504 9.079925343421834 1.5473063673689063 8 87.12040261675713 2.402379127632219 8.765459687178865 1.711758568431787 9 82.37784506242102 5.2173837779313015 10.02080438371341 2.3839667759342693 10 42.6515438835584 33.478573215850986 14.678539223817086 9.191343676773526 11 31.97902880352762 23.108484946722207 29.117717875560828 15.794768374189344 12 31.20091023113009 22.19526377660939 30.27187332302032 16.3319526692402 13 24.283964100635306 28.88866507302779 30.47673040697592 16.350640419360982 14 17.168180308855398 32.59910802385107 32.875371984583985 17.357339682709544 15 16.280374478906843 26.97244284695874 40.895682224841565 15.851500449292855 16 21.364111336500677 24.606770394826917 37.77042157990567 16.258696688766737 17 21.41891562264436 24.32444766879169 30.094083969765972 24.16255273879797 18 22.679414203949054 25.772138492358877 33.18067080760981 18.36777649608226 19 25.0602729119685 27.38994685597292 29.265528143358253 18.284252088700324 20 24.94507768596082 28.361827890149076 28.887799535127463 17.805294888762642 21 22.711989903106968 27.56100861918378 32.23385102991141 17.493150447797838 22 22.073104904767227 24.250444178313398 31.95664284601451 21.719808070904865 23 19.083340283864956 28.250763640483882 31.468440127596025 21.197455948055136 24 19.56221879853897 28.319731274087527 34.29446071480841 17.823589212565093 25 20.306502707559922 28.149967817727163 32.08497851105449 19.458550963658425 26 18.390241138859032 31.537604474358833 29.044658608246532 21.027495778535606 27 17.844401464804868 30.287334977330776 32.709582134038776 19.158681423825584 28 16.92445270464857 28.624243244476688 35.16782779887417 19.283476252000572 29 18.213317323505017 27.75579398939008 34.28564796527777 19.745240721827134 30 20.764962396312495 27.90671232510233 32.813682737869485 18.51464254071569 31 24.793254469716402 27.082798929250934 29.539274175653834 18.58467242537883 32 25.242114556301665 28.57655997469482 28.802819450367696 17.378506018635818 33 24.183286305774082 28.63553457981282 28.281962347527628 18.899216766885466 34 19.694134643075774 28.748920044756176 31.20913284118324 20.34781247098481 35 19.785842317879023 29.918576489157957 30.415552614475256 19.880028578487764 36 24.408719586178464 28.56522929672685 28.949370753946457 18.076680363148228 37 20.645124739748493 31.497829073575446 29.476837418934508 18.38020876774156 38 20.31354503865807 31.67644462209828 27.804775566022442 20.2052347732212 39 19.468071880562064 29.981721413250284 28.985054521019194 21.565152185168458 40 22.49950034857572 28.38865956505934 28.225033559264958 20.886806527099992 41 18.606782984469103 27.694026057411914 29.463854350429543 24.23533660768944 42 20.909861309354262 28.32075418251519 28.70155151602897 22.067832992101575 43 20.835385707293966 28.172235747344764 28.89964166730926 22.092736878052005 44 20.677464383115403 29.964686053666494 29.24042754424866 20.117422018969442 45 19.343985219760075 31.246587026688466 27.19889903579078 22.21052871776068 46 21.368281655475 29.65702667273068 28.73160928674956 20.243082385044765 47 20.446798532677203 28.986352827869695 30.029011256713822 20.537837382739283 48 21.152566005133426 28.296165037619424 29.89918057166418 20.65208838558297 49 20.901245272982784 26.94269981729282 30.472166661683264 21.683888248041132 50 19.01822822818097 29.568191010051255 30.072720920680535 21.34085984108724 51 18.94123469768335 31.058607931789318 28.366942432287395 21.633214938239938 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1614.0 1 2686.5 2 3759.0 3 29959.0 4 56159.0 5 38573.5 6 20988.0 7 19159.0 8 17330.0 9 18782.5 10 20235.0 11 21504.0 12 22773.0 13 22874.5 14 22976.0 15 21777.5 16 20579.0 17 19030.5 18 17482.0 19 17041.0 20 16600.0 21 16586.0 22 16572.0 23 16529.5 24 16487.0 25 19052.0 26 23658.0 27 25699.0 28 30882.5 29 36066.0 30 43922.0 31 51778.0 32 58579.5 33 65381.0 34 71167.0 35 76953.0 36 84716.0 37 92479.0 38 102944.0 39 113409.0 40 128116.5 41 142824.0 42 160327.0 43 177830.0 44 186436.0 45 195042.0 46 201248.5 47 207455.0 48 208644.5 49 209834.0 50 201518.5 51 193203.0 52 176527.0 53 159851.0 54 143025.0 55 126199.0 56 116475.5 57 106752.0 58 96667.5 59 86583.0 60 77502.0 61 68421.0 62 58717.5 63 49014.0 64 40805.5 65 32597.0 66 25979.5 67 19362.0 68 15859.5 69 12357.0 70 9925.5 71 7494.0 72 6129.5 73 4765.0 74 3690.5 75 1972.5 76 1329.0 77 922.5 78 516.0 79 443.0 80 370.0 81 292.0 82 214.0 83 161.5 84 109.0 85 75.0 86 41.0 87 28.0 88 15.0 89 16.5 90 18.0 91 13.5 92 9.0 93 8.0 94 7.0 95 7.0 96 7.0 97 3.5 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2541772.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.140199297395984 #Duplication Level Percentage of deduplicated Percentage of total 1 76.15785333014841 16.861500507913387 2 8.404872702585722 3.7217111340898223 3 3.1360317072564863 2.0829710100483476 4 1.7752472357828686 1.572173104095361 5 1.0997869588329001 1.2174751226618723 6 0.7954714485248183 1.0567137843436651 7 0.5450410267549621 0.844712187032854 8 0.4491981654149187 0.7956269525048758 9 0.39937487733501914 0.7958015440713361 >10 4.775368188718672 26.406818311141418 >50 2.1757405902875506 33.823257154325695 >100 0.28057978080410834 8.007679644267776 >500 0.0036226583689464766 0.5782478841725632 >1k 0.0016301962660259144 0.590238737724654 >5k 0.0 0.0 >10k+ 1.811329184473238E-4 1.6450729216064026 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41021 1.6138741004307229 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4036 0.15878686207889614 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5737052733290005E-4 0.0 0.0 0.05319123823852021 0.0 2 1.5737052733290005E-4 0.0 0.0 0.15351494941324398 0.0 3 1.5737052733290005E-4 0.0 0.0 0.2626907527504434 0.0 4 1.5737052733290005E-4 0.0 0.0 0.389216656726095 0.0 5 1.5737052733290005E-4 0.0 0.0 0.7086788272118821 0.0 6 1.5737052733290005E-4 0.0 0.0 1.1924358282332168 0.0 7 1.5737052733290005E-4 0.0 0.0 1.5242122424828033 0.0 8 1.5737052733290005E-4 0.0 0.0 2.1419309048962694 0.0 9 1.5737052733290005E-4 0.0 0.0 2.515017082570742 0.0 10 1.5737052733290005E-4 0.0 0.0 3.014275080534367 0.0 11 1.5737052733290005E-4 0.0 0.0 3.515146126403155 0.0 12 1.5737052733290005E-4 0.0 0.0 3.8836292161531403 0.0 13 1.5737052733290005E-4 0.0 0.0 4.048986297748185 0.0 14 1.5737052733290005E-4 0.0 0.0 4.155447459488892 0.0 15 1.5737052733290005E-4 0.0 0.0 4.258446469628275 0.0 16 1.5737052733290005E-4 0.0 0.0 4.437455444469449 0.0 17 1.5737052733290005E-4 3.934263183322501E-5 0.0 4.66461980067449 0.0 18 1.5737052733290005E-4 3.934263183322501E-5 0.0 4.938051091915404 0.0 19 1.5737052733290005E-4 3.934263183322501E-5 0.0 5.089441539209654 0.0 20 1.5737052733290005E-4 3.934263183322501E-5 0.0 5.256096927655195 0.0 21 1.5737052733290005E-4 3.934263183322501E-5 0.0 5.45623289579081 0.0 22 1.5737052733290005E-4 3.934263183322501E-5 0.0 5.6857971525376785 0.0 23 1.5737052733290005E-4 3.934263183322501E-5 0.0 5.925944577247684 0.0 24 1.5737052733290005E-4 3.934263183322501E-5 0.0 6.102120882596865 0.0 25 1.5737052733290005E-4 3.934263183322501E-5 0.0 6.250521289871791 3.934263183322501E-5 26 1.5737052733290005E-4 3.934263183322501E-5 0.0 6.40545257403103 3.934263183322501E-5 27 1.5737052733290005E-4 3.934263183322501E-5 0.0 6.602205075828989 3.934263183322501E-5 28 1.9671315916612505E-4 3.934263183322501E-5 0.0 6.778696122232836 3.934263183322501E-5 29 1.9671315916612505E-4 3.934263183322501E-5 0.0 6.992208585191748 3.934263183322501E-5 30 1.9671315916612505E-4 3.934263183322501E-5 0.0 7.250650333704203 3.934263183322501E-5 31 1.9671315916612505E-4 3.934263183322501E-5 0.0 7.457907318201633 3.934263183322501E-5 32 1.9671315916612505E-4 3.934263183322501E-5 0.0 7.652220576825931 3.934263183322501E-5 33 1.9671315916612505E-4 3.934263183322501E-5 0.0 7.842874970689739 3.934263183322501E-5 34 1.9671315916612505E-4 3.934263183322501E-5 0.0 8.066183748975124 3.934263183322501E-5 35 1.9671315916612505E-4 3.934263183322501E-5 0.0 8.311367030559783 3.934263183322501E-5 36 1.9671315916612505E-4 3.934263183322501E-5 0.0 8.523935270354697 3.934263183322501E-5 37 1.9671315916612505E-4 3.934263183322501E-5 0.0 8.751020941296073 3.934263183322501E-5 38 2.3605579099935005E-4 3.934263183322501E-5 0.0 9.023075240422823 3.934263183322501E-5 39 2.3605579099935005E-4 3.934263183322501E-5 0.0 9.527054354206436 3.934263183322501E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGAT 20 7.0349016E-4 45.0 23 CGTTTTT 15315 0.0 43.48678 1 TCGATAG 110 0.0 42.954548 1 CGGTCTA 360 0.0 40.625 31 TTATACG 95 0.0 40.263157 1 TACGTAG 210 0.0 39.64286 1 CGGTTTT 1505 0.0 39.46844 1 AGGGCGA 1720 0.0 39.375 6 CGAGGGA 1730 0.0 39.27746 4 TGCGTAG 215 0.0 38.720932 1 GTCGCGC 35 6.251279E-6 38.571426 39 TAACGGG 715 0.0 38.391613 3 TACGGGA 1020 0.0 38.382355 4 CGTTAGG 460 0.0 38.152176 2 AAGGGAT 4240 0.0 38.04835 5 CGACGGT 385 0.0 37.987015 28 CTAACGG 190 0.0 37.894737 2 GGGCGAT 3530 0.0 37.861187 7 ACGGGAT 1090 0.0 37.56881 5 ACGGCGC 30 1.1403108E-4 37.500004 26 >>END_MODULE