SRR1547896_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547896_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1644350
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5937	0.36105452002310945	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3876	0.23571624045975614	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1881	0.1143917049289993	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	1793	0.10904004621887069	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1781	0.10831027457658042	No Hit
GAGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	1755	0.10672910268495149	No Hit
AAGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	1706	0.10374920181226625	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1647	0.1001611579043391	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGCG	30	2.1660744E-6	45.000004	1
GTCGTAC	30	2.1660744E-6	45.000004	15
CCAACGA	30	2.1660744E-6	45.000004	2
GTTGACG	20	7.0341746E-4	45.0	1
CTTAACG	35	1.2123564E-7	45.0	1
AACGTCA	20	7.0341746E-4	45.0	26
GTCGAAT	20	7.0341746E-4	45.0	27
GGTCGAA	20	7.0341746E-4	45.0	9
TAGCGGA	25	3.891542E-5	45.0	3
CGACCGT	20	7.0341746E-4	45.0	8
TGACGTA	85	0.0	45.0	22
CCCGTCG	20	7.0341746E-4	45.0	18
TGCGCAA	20	7.0341746E-4	45.0	32
ACGGCCC	20	7.0341746E-4	45.0	11
TACGAGT	25	3.891542E-5	45.0	22
CGTAGAT	25	3.891542E-5	45.0	34
GCGATCG	20	7.0341746E-4	45.0	9
CCGACAG	35	1.2123564E-7	45.0	30
ACCGTTG	25	3.891542E-5	45.0	1
CGCAACA	20	7.0341746E-4	45.0	34