##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547893_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2291411 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.428720993309362 31.0 31.0 33.0 30.0 34.0 2 31.838149943419143 31.0 31.0 34.0 30.0 34.0 3 31.927299380163575 33.0 31.0 34.0 30.0 34.0 4 35.693939672978786 37.0 35.0 37.0 33.0 37.0 5 35.55864705196929 37.0 35.0 37.0 33.0 37.0 6 35.609015143944056 37.0 35.0 37.0 33.0 37.0 7 35.95906321476156 37.0 35.0 37.0 35.0 37.0 8 35.984966468259074 37.0 35.0 37.0 35.0 37.0 9 37.72776424657122 39.0 38.0 39.0 35.0 39.0 10 37.22820000427684 39.0 37.0 39.0 34.0 39.0 11 36.961363980534266 39.0 37.0 39.0 33.0 39.0 12 36.24229481310861 38.0 35.0 39.0 32.0 39.0 13 35.93847589978402 38.0 35.0 39.0 32.0 39.0 14 36.81043819725051 39.0 35.0 41.0 31.0 41.0 15 37.080563460679905 39.0 35.0 41.0 32.0 41.0 16 37.25265916939388 39.0 35.0 41.0 32.0 41.0 17 37.20418510690575 39.0 35.0 41.0 32.0 41.0 18 37.12867922864994 39.0 35.0 41.0 32.0 41.0 19 37.05836142010316 38.0 35.0 41.0 32.0 41.0 20 36.90426902899567 38.0 35.0 41.0 32.0 41.0 21 36.775413489766784 38.0 35.0 41.0 31.0 41.0 22 36.71758536552369 38.0 35.0 41.0 31.0 41.0 23 36.66576358409731 38.0 35.0 41.0 31.0 41.0 24 36.68657041447388 38.0 35.0 41.0 31.0 41.0 25 36.6520968957555 38.0 35.0 41.0 31.0 41.0 26 36.5347770434898 38.0 35.0 40.0 31.0 41.0 27 36.45654358820831 38.0 35.0 40.0 31.0 41.0 28 36.400292221692226 38.0 35.0 40.0 31.0 41.0 29 36.424754878107855 38.0 35.0 40.0 31.0 41.0 30 36.35541856087799 38.0 35.0 40.0 31.0 41.0 31 36.17949289760763 38.0 35.0 40.0 30.0 41.0 32 36.08256659324757 38.0 35.0 40.0 30.0 41.0 33 35.99925984469831 38.0 35.0 40.0 30.0 41.0 34 35.88711409694725 38.0 35.0 40.0 30.0 41.0 35 35.852292321194234 38.0 35.0 40.0 30.0 41.0 36 35.72678188242965 38.0 35.0 40.0 29.0 41.0 37 35.608206471907486 38.0 34.0 40.0 29.0 41.0 38 35.48958611091594 38.0 34.0 40.0 29.0 41.0 39 35.41635699575502 38.0 34.0 40.0 28.0 41.0 40 35.227635286729445 37.0 34.0 40.0 27.0 41.0 41 35.186062648734776 37.0 34.0 40.0 27.0 41.0 42 35.12223036373658 37.0 34.0 40.0 27.0 41.0 43 35.0677874898916 37.0 34.0 40.0 27.0 41.0 44 34.86354128526048 37.0 34.0 40.0 26.0 41.0 45 34.727943175624105 37.0 34.0 40.0 26.0 41.0 46 34.73372694815553 36.0 34.0 40.0 26.0 41.0 47 34.63445885526429 36.0 34.0 40.0 25.0 41.0 48 34.56023384717975 36.0 34.0 40.0 25.0 41.0 49 34.450937871905126 36.0 34.0 40.0 24.0 41.0 50 34.33127099416037 36.0 34.0 40.0 24.0 41.0 51 33.99725933060459 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 7.0 11 5.0 12 1.0 13 9.0 14 21.0 15 64.0 16 181.0 17 438.0 18 989.0 19 1859.0 20 3077.0 21 5047.0 22 7774.0 23 11371.0 24 16501.0 25 23615.0 26 31129.0 27 36238.0 28 40986.0 29 47764.0 30 56374.0 31 69329.0 32 85717.0 33 113400.0 34 199878.0 35 301045.0 36 156885.0 37 199728.0 38 311269.0 39 570634.0 40 75.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.8816611249575 24.551291758658746 29.973845809416122 12.593201306967627 2 29.989076599527543 25.99782404815199 30.116596280632322 13.896503071688143 3 29.199301216586637 25.668812797005863 31.066796833915873 14.06508915249163 4 26.132326326442527 27.975208288691988 30.53520298191813 15.357262402947356 5 23.685580631322797 31.999540894235036 29.396079533527598 14.918798940914572 6 21.144788080357475 40.97754614951224 26.61635123511234 11.261314535017943 7 87.96440271954704 3.7269612478948564 6.219399313348849 2.089236719209256 8 88.48272963689186 2.832054136075981 5.734457938798408 2.9507582882337564 9 84.05113705048986 4.953847214663804 7.860353293232859 3.134662441613486 10 46.202187211285974 28.221388480722144 13.582548045723792 11.993876262268095 11 39.01177047679356 22.24349974753547 23.04881140921467 15.695918366456302 12 36.09474686121346 21.71208046046737 25.58772738718632 16.605445291132845 13 24.00647461324049 33.25632110520548 26.99847386610259 15.73873041545144 14 16.687665372995067 36.83468395674107 29.571211799192724 16.906438871071146 15 15.450829205236424 26.634244140400824 42.21634617272938 15.69858048163337 16 19.51465712611138 23.040650498753827 39.63365803864955 17.81103433648525 17 19.857546289164187 23.210720381459286 27.36785325722884 29.563880072147686 18 22.355657714831604 25.36816834692685 32.04968467027521 20.226489267966333 19 26.45828269131989 27.227764901189705 26.233224855776637 20.08072755171377 20 27.393776149280946 27.391026751639057 25.41743929831881 19.79775780076119 21 22.925874057513035 27.292790337482014 29.701306313009756 20.080029291995196 22 21.974320626024753 24.210584657226487 28.589982329665 25.225112387083765 23 19.45984373820323 29.016357170319946 27.677051388860402 23.846747702616423 24 20.288372535525053 26.80902727620667 33.804542266751795 19.09805792151648 25 20.063183776284568 27.041111350168084 30.69383886173192 22.201866011815426 26 18.034608370126527 32.64407825571231 26.840274398612905 22.481038975548255 27 18.629307444190502 31.887033797079617 29.392762799864364 20.09089595886552 28 15.978538987549593 28.806311918726056 34.53749676509364 20.6776523286307 29 17.110854403684016 26.6743940742189 33.89627613727961 22.318475384817475 30 20.46189007559098 28.912621960879125 30.21937138296011 20.406116580569787 31 25.08061626657112 27.84341176681093 25.546268216395923 21.529703750222023 32 26.04382190711313 28.062621677211112 25.40565616556785 20.487900250107902 33 24.41307997561328 28.739628115602134 25.84743636126387 20.99985554752072 34 18.397267011461498 29.167443116926645 28.26236759795602 24.17292227365584 35 18.675654433010926 28.666136280222098 29.125242045185257 23.532967241581716 36 25.9428360953142 26.619318838916286 26.588508128834153 20.849336936935366 37 19.143357520759043 30.98706430230107 28.34253654189493 21.52704163504496 38 19.731510409961373 30.995443418923973 25.517159514377823 23.755886656736834 39 19.185995004824537 29.179357173374832 27.53696303282126 24.097684788979368 40 22.138368018657502 26.9654374531675 27.07013276972136 23.826061758453633 41 17.777168740134353 25.14878387159702 27.984940283519634 29.089107104748997 42 21.09246224269675 26.577030484710072 26.27529500382079 26.055212268772387 43 21.14836666141517 26.46338871551197 27.652263168850983 24.735981454221875 44 20.288503459222287 29.377750215915 27.347429160460518 22.986317164402195 45 18.41847665041322 32.6870648696371 24.888682126427778 24.005776353521913 46 21.825242176108954 29.574528532855954 26.531032625748942 22.069196665286146 47 20.32865339304036 27.82992662599595 27.928337605082632 23.91308237588106 48 21.1704054837827 26.105836098369085 28.661423027121717 24.0623353907265 49 21.359459302586924 24.007041949261833 30.071864017411105 24.561634730740142 50 18.455353491800466 29.335810991568078 28.781567339949056 23.427268176682404 51 18.24085683450066 30.63256657142695 25.96640236081611 25.160174233256278 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1397.0 1 1999.5 2 2602.0 3 8727.5 4 14853.0 5 10991.5 6 7130.0 7 6985.5 8 6841.0 9 7751.5 10 8662.0 11 8867.0 12 9072.0 13 9128.0 14 9184.0 15 8776.0 16 8368.0 17 8371.5 18 8375.0 19 8155.5 20 7936.0 21 8735.5 22 9535.0 23 10552.0 24 11569.0 25 12102.0 26 16884.5 27 21134.0 28 25668.0 29 30202.0 30 32981.5 31 35761.0 32 44870.0 33 53979.0 34 58175.5 35 62372.0 36 64740.0 37 67108.0 38 81546.0 39 95984.0 40 118116.0 41 140248.0 42 165501.5 43 190755.0 44 200837.0 45 210919.0 46 216912.0 47 222905.0 48 224881.5 49 226858.0 50 207005.0 51 187152.0 52 164756.0 53 142360.0 54 129067.0 55 115774.0 56 107189.5 57 98605.0 58 91403.5 59 84202.0 60 72753.5 61 61305.0 62 52968.0 63 44631.0 64 38433.0 65 32235.0 66 25750.0 67 19265.0 68 15879.0 69 12493.0 70 10377.0 71 8261.0 72 6271.0 73 4281.0 74 3427.0 75 1646.5 76 720.0 77 678.0 78 636.0 79 456.0 80 276.0 81 208.5 82 141.0 83 98.0 84 55.0 85 43.5 86 32.0 87 21.5 88 11.0 89 9.5 90 8.0 91 5.5 92 3.0 93 3.5 94 4.0 95 3.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2291411.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.83460586013259 #Duplication Level Percentage of deduplicated Percentage of total 1 76.83766765465747 15.240448531419892 2 9.35111156612226 3.7095122453632445 3 3.3945973600704824 2.0199150207253385 4 1.661127035844601 1.3179120015835202 5 0.9887069634081863 0.9805306465184956 6 0.6560026021380162 0.7806931833977354 7 0.4966379346764499 0.6895432382648362 8 0.3796082803344288 0.6023504497340894 9 0.28019046224071054 0.5001720645881571 >10 2.9541733407434965 13.954533362369595 >50 1.7785268833929269 26.53720778239582 >100 1.212933424603055 31.588223289933303 >500 0.006034494300845154 0.8471077453235446 >1k 0.0024584976781220993 0.8119538156547199 >5k 2.2349978892019086E-4 0.4198966227277521 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9472 0.41336975339648807 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3583 0.15636653572842235 No Hit GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 2448 0.10683373694199774 Illumina PCR Primer Index 8 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.3641232410946795E-5 0.0 0.0 0.11289986824711935 0.0 2 4.3641232410946795E-5 0.0 0.0 0.4391617217513576 0.0 3 4.3641232410946795E-5 0.0 0.0 0.6487705610211351 0.0 4 4.3641232410946795E-5 0.0 0.0 1.0668099262855943 0.0 5 4.3641232410946795E-5 0.0 0.0 1.8616476921861682 0.0 6 4.3641232410946795E-5 0.0 0.0 2.675382111720682 0.0 7 4.3641232410946795E-5 0.0 0.0 3.133222280943925 0.0 8 4.3641232410946795E-5 0.0 0.0 4.208978659873764 0.0 9 4.3641232410946795E-5 0.0 0.0 4.559897809690186 0.0 10 4.3641232410946795E-5 0.0 0.0 5.221149763180852 0.0 11 4.3641232410946795E-5 0.0 0.0 6.042390474690049 0.0 12 8.728246482189359E-5 0.0 0.0 6.661615921368973 0.0 13 8.728246482189359E-5 0.0 0.0 6.906879647518494 0.0 14 8.728246482189359E-5 0.0 0.0 7.008825566430466 0.0 15 8.728246482189359E-5 0.0 0.0 7.168988889378641 0.0 16 8.728246482189359E-5 0.0 0.0 7.51838059606068 0.0 17 8.728246482189359E-5 0.0 0.0 7.941438703052398 0.0 18 8.728246482189359E-5 0.0 0.0 8.482459061250907 0.0 19 8.728246482189359E-5 0.0 0.0 8.73793483578459 0.0 20 8.728246482189359E-5 0.0 0.0 9.008030423175938 0.0 21 8.728246482189359E-5 0.0 0.0 9.35615653411806 0.0 22 8.728246482189359E-5 0.0 0.0 9.737537264157325 0.0 23 8.728246482189359E-5 0.0 0.0 10.111498984686728 0.0 24 8.728246482189359E-5 0.0 0.0 10.372124424644902 0.0 25 8.728246482189359E-5 0.0 0.0 10.600717200013442 0.0 26 8.728246482189359E-5 0.0 0.0 10.826386012810447 0.0 27 8.728246482189359E-5 0.0 0.0 11.08325830678128 0.0 28 8.728246482189359E-5 0.0 0.0 11.321714000674694 0.0 29 8.728246482189359E-5 0.0 0.0 11.598661261554561 0.0 30 8.728246482189359E-5 0.0 0.0 11.93971749284611 0.0 31 1.3092369723284039E-4 0.0 0.0 12.211951500625597 0.0 32 1.3092369723284039E-4 0.0 0.0 12.472140528259661 0.0 33 1.3092369723284039E-4 0.0 0.0 12.72792179142022 0.0 34 1.3092369723284039E-4 0.0 0.0 13.002861555609186 0.0 35 1.3092369723284039E-4 0.0 0.0 13.332963837565588 0.0 36 1.3092369723284039E-4 0.0 0.0 13.604586868091321 0.0 37 1.3092369723284039E-4 0.0 0.0 13.884938145099243 0.0 38 1.3092369723284039E-4 0.0 0.0 14.221761176846929 0.0 39 1.3092369723284039E-4 0.0 0.0 14.766447398567957 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACCG 35 1.2126293E-7 45.000004 44 CGGCCTA 20 7.0347544E-4 45.000004 44 TCCGAAC 60 0.0 45.000004 36 TATCGAT 20 7.0347544E-4 45.000004 1 AGTAACG 55 1.8189894E-12 45.0 1 CGACGGT 495 0.0 42.272728 28 CGGGTAT 195 0.0 41.538464 6 CGTTTTT 4785 0.0 41.52038 1 TCACGAC 520 0.0 40.67308 25 ATTAACG 155 0.0 40.64516 1 CGTTAGG 355 0.0 40.56338 2 TGCGTAG 180 0.0 40.0 1 GTAGGGC 900 0.0 39.5 4 TTAACGG 285 0.0 39.473686 2 ACGGTCT 550 0.0 38.863636 30 CACGACG 540 0.0 38.75 26 GGTACGA 35 6.251006E-6 38.57143 36 CGTAAGG 420 0.0 38.57143 2 TAGGGAC 2130 0.0 38.55634 5 CTCACGA 550 0.0 38.454544 24 >>END_MODULE