##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547890_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2100640 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.527464010968085 31.0 31.0 33.0 30.0 34.0 2 31.964231853149517 31.0 31.0 34.0 30.0 34.0 3 32.02553650316094 33.0 31.0 34.0 30.0 34.0 4 35.80453718866631 37.0 35.0 37.0 35.0 37.0 5 35.74566655876304 37.0 35.0 37.0 35.0 37.0 6 35.77857938533018 37.0 35.0 37.0 35.0 37.0 7 36.04619592124305 37.0 35.0 37.0 35.0 37.0 8 36.06628313275954 37.0 35.0 37.0 35.0 37.0 9 37.82760396831442 39.0 38.0 39.0 35.0 39.0 10 37.30820083403153 39.0 37.0 39.0 34.0 39.0 11 37.1356339020489 39.0 37.0 39.0 34.0 39.0 12 36.627480672556935 39.0 35.0 39.0 33.0 39.0 13 36.42689275649326 39.0 35.0 39.0 32.0 39.0 14 37.43860870972656 40.0 35.0 41.0 32.0 41.0 15 37.606674632492954 40.0 35.0 41.0 33.0 41.0 16 37.7203623657552 40.0 35.0 41.0 33.0 41.0 17 37.66237956051489 40.0 35.0 41.0 33.0 41.0 18 37.53718390585726 39.0 36.0 41.0 33.0 41.0 19 37.46359395231929 39.0 36.0 41.0 33.0 41.0 20 37.32454870896489 39.0 35.0 41.0 32.0 41.0 21 37.20305430725874 39.0 35.0 41.0 32.0 41.0 22 37.129992764109986 39.0 35.0 41.0 32.0 41.0 23 37.04110794805393 39.0 35.0 41.0 32.0 41.0 24 37.0788978596999 39.0 35.0 41.0 32.0 41.0 25 37.045362365755196 39.0 35.0 41.0 32.0 41.0 26 36.95268584812248 39.0 35.0 41.0 32.0 41.0 27 36.88820787950339 39.0 35.0 41.0 32.0 41.0 28 36.81090239165207 39.0 35.0 41.0 31.0 41.0 29 36.81815256302841 38.0 35.0 41.0 31.0 41.0 30 36.742356615126816 38.0 35.0 41.0 31.0 41.0 31 36.5875885444436 38.0 35.0 41.0 31.0 41.0 32 36.438537778962605 38.0 35.0 41.0 31.0 41.0 33 36.315513843400105 38.0 35.0 41.0 30.0 41.0 34 36.14475921623886 38.0 35.0 41.0 30.0 41.0 35 36.03021126894661 38.0 35.0 41.0 30.0 41.0 36 35.904397707365376 38.0 35.0 41.0 29.0 41.0 37 35.801080623048215 38.0 35.0 41.0 29.0 41.0 38 35.67813666311219 38.0 35.0 40.0 28.0 41.0 39 35.60752484956966 38.0 35.0 40.0 28.0 41.0 40 35.43076205346942 38.0 35.0 40.0 27.0 41.0 41 35.348009654200624 38.0 35.0 40.0 26.0 41.0 42 35.28174080280296 38.0 34.0 40.0 26.0 41.0 43 35.22189189961155 38.0 34.0 40.0 26.0 41.0 44 35.07075081879808 38.0 34.0 40.0 26.0 41.0 45 34.94010254017823 38.0 34.0 40.0 25.0 41.0 46 34.886837820854595 37.0 34.0 40.0 25.0 41.0 47 34.80190560971894 37.0 34.0 40.0 24.0 41.0 48 34.70174851473836 37.0 34.0 40.0 24.0 41.0 49 34.574092657475816 37.0 34.0 40.0 24.0 41.0 50 34.49237327671567 37.0 34.0 40.0 24.0 41.0 51 34.181188590143954 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 3.0 10 2.0 11 5.0 12 16.0 13 24.0 14 37.0 15 61.0 16 137.0 17 357.0 18 752.0 19 1445.0 20 2574.0 21 4210.0 22 6458.0 23 9790.0 24 14934.0 25 22095.0 26 29447.0 27 33817.0 28 36218.0 29 39717.0 30 46058.0 31 55554.0 32 68941.0 33 91563.0 34 160321.0 35 238138.0 36 141746.0 37 188371.0 38 314303.0 39 593477.0 40 68.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.681201919415038 25.984461878284716 30.394070378551298 16.940265823748955 2 29.551565237261023 27.498762281971207 29.130169852997184 13.819502627770582 3 28.088582527229793 25.273964125218978 32.141966257902354 14.49548708964887 4 25.534122933962983 27.876171071673394 31.160646279229187 15.429059715134436 5 23.853063828166654 30.91529248229111 30.575158047071373 14.656485642470866 6 22.257169243659074 39.06595132911874 27.744068474369715 10.932810952852464 7 87.95571825729301 3.25962563790083 7.049280219361719 1.7353758854444359 8 88.53173318607662 2.6817065275344656 6.811257521517251 1.9753027648716583 9 83.57053088582526 4.462687561885901 8.939894508340315 3.026887043948511 10 39.39875466524488 24.51252951481453 20.213934800822607 15.874781019117984 11 34.62206756036256 21.184210526315788 25.347227511615504 18.846494401706146 12 33.293044024678196 21.62079175870211 27.106881712240078 17.97928250437962 13 25.094923451900375 29.502056516109377 28.106005788712014 17.297014243278237 14 19.293024982862367 32.68727625866403 30.228168558153705 17.7915302003199 15 17.925917815522887 25.653467514662196 39.884130550689314 16.5364841191256 16 21.45512796100236 23.53235204509102 37.26207251123467 17.750447482671948 17 21.796928555107016 22.519422652144108 29.0294386472694 26.654210145479475 18 23.393584812247695 24.49677241221723 32.358852540178226 19.750790235356845 19 25.935429202528752 26.58213687257217 27.846513443521975 19.635920481377102 20 26.89532713839592 26.21943788559677 27.577595399497294 19.307639576510017 21 23.63465420062457 25.999076471932366 31.117421357300636 19.24884797014243 22 22.94505484042958 23.46132607205423 30.301431944550234 23.292187142965954 23 20.210174042196662 27.242078604615738 29.878465610480614 22.669281742706985 24 20.847075177088886 25.881445654657625 33.8810076928936 19.39047147535989 25 20.62238175032371 26.87504760453957 31.05153667453728 21.451033970599436 26 19.15211554573844 30.33418386777363 28.978596999009827 21.5351035874781 27 19.11960164521289 29.60202604920405 31.725331327595402 19.55304097798766 28 16.99382093076396 28.356167644146545 34.800536979206335 19.849474445883157 29 18.403343742859317 26.384768451519534 34.55532599588697 20.656561809734175 30 19.991288369258893 27.380179373905094 32.74273554726179 19.885796709574226 31 24.287931297128495 26.82849036484119 28.313133140376266 20.570445197654045 32 24.193293472465534 27.83942036712621 28.48498552821997 19.482300632188284 33 23.394060857643385 27.772678802650617 27.85251161550765 20.98074872419834 34 19.87061086145175 27.61896374438266 30.50722636910656 22.003199025059033 35 19.719276030162234 27.541844390281057 31.02378322796862 21.715096351588087 36 24.176060629141595 26.120420443293472 29.2674137405743 20.43610518699063 37 20.915625714068092 29.321492497524567 29.752170767004344 20.010711021403 38 20.763624419224616 29.115793282047374 27.203423718485798 22.917158580242212 39 20.3613184553279 28.370401401477647 28.80722065656181 22.461059486632646 40 22.670091019879656 26.605891537817044 28.859776068245868 21.864241374057432 41 19.36809734176251 25.494230329804253 30.180040368649554 24.957631959783686 42 22.09436171833346 27.26583326986061 28.130855358366976 22.508949653438954 43 21.451510015995126 27.43459136263234 28.55386929697616 22.560029324396375 44 20.359081041968164 29.303831213344505 28.46303983547871 21.87404790920862 45 19.440218219209385 30.48132949958108 26.97635006474217 23.10210221646736 46 22.01990821844771 29.038435905247923 28.056497067560365 20.885158808744002 47 21.07105453576053 28.225017137634246 29.209240993221115 21.49468733338411 48 21.60141671109757 26.68672404600503 29.647678802650624 22.06418044024678 49 21.147269403610327 25.36127085078833 30.5850597913017 22.90639995429964 50 19.341295985985223 28.68778086678346 29.7314151877523 22.239507959479017 51 19.084945540406732 29.99352578261863 27.661379389138546 23.26014928783609 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1403.0 1 2599.5 2 3796.0 3 12991.5 4 22187.0 5 16540.0 6 10893.0 7 10149.0 8 9405.0 9 9781.0 10 10157.0 11 10131.0 12 10105.0 13 10008.5 14 9912.0 15 9733.5 16 9555.0 17 9176.0 18 8797.0 19 8735.5 20 8674.0 21 8735.5 22 8797.0 23 10200.0 24 11603.0 25 12223.0 26 16978.0 27 21113.0 28 24073.0 29 27033.0 30 32518.5 31 38004.0 32 43299.0 33 48594.0 34 54490.0 35 60386.0 36 66063.0 37 71740.0 38 80354.5 39 88969.0 40 109145.5 41 129322.0 42 146011.0 43 162700.0 44 169825.0 45 176950.0 46 180279.5 47 183609.0 48 184671.0 49 185733.0 50 175963.5 51 166194.0 52 154825.5 53 143457.0 54 128680.5 55 113904.0 56 105194.5 57 96485.0 58 87685.5 59 78886.0 60 69193.5 61 59501.0 62 51103.5 63 42706.0 64 35604.5 65 28503.0 66 22623.0 67 16743.0 68 13168.0 69 9593.0 70 7468.5 71 5344.0 72 4374.0 73 3404.0 74 2648.0 75 1296.0 76 700.0 77 525.5 78 351.0 79 326.5 80 302.0 81 226.0 82 150.0 83 136.5 84 123.0 85 87.5 86 52.0 87 40.0 88 28.0 89 21.5 90 15.0 91 15.5 92 16.0 93 12.0 94 8.0 95 5.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2100640.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.466624379815492 #Duplication Level Percentage of deduplicated Percentage of total 1 77.4683342035653 15.855152974743842 2 7.840470458993888 3.20935927690535 3 2.778041525959386 1.7057139727002062 4 1.4146078839235117 1.158089928199526 5 0.8938903142129735 0.9147458648876087 6 0.631505155033071 0.7754867281187408 7 0.4750642543959383 0.6806073155699146 8 0.3769980571420806 0.6172702101957744 9 0.3103458786244261 0.5716559273066945 >10 4.819088519892287 25.680548680168574 >50 2.5898559994799357 37.15736686251695 >100 0.3977821336983227 10.372899836148248 >500 0.0033069771237403353 0.46420634864993915 >1k 4.724253033914765E-4 0.21967857199180618 >5k 0.0 0.0 >10k+ 2.3621265169573825E-4 0.6172175018968727 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12767 0.6077671566760606 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3160 0.1504303450377028 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.520907913778658E-5 0.0 0.0 0.017280447863508266 0.0 2 9.520907913778658E-5 0.0 0.0 0.0978749333536446 0.0 3 9.520907913778658E-5 0.0 0.0 0.19203671262091554 0.0 4 9.520907913778658E-5 0.0 0.0 0.40382930916292176 0.0 5 9.520907913778658E-5 0.0 0.0 0.7846656257140681 0.0 6 9.520907913778658E-5 0.0 0.0 1.2587116307411075 0.0 7 9.520907913778658E-5 0.0 0.0 1.5219647345570875 0.0 8 9.520907913778658E-5 0.0 0.0 2.1063104577652525 0.0 9 9.520907913778658E-5 0.0 0.0 2.34471399192627 0.0 10 9.520907913778658E-5 0.0 0.0 2.771345875542692 0.0 11 9.520907913778658E-5 0.0 0.0 3.320749866707289 0.0 12 9.520907913778658E-5 0.0 0.0 3.7425260872876835 0.0 13 9.520907913778658E-5 0.0 0.0 3.9076662350521745 0.0 14 9.520907913778658E-5 0.0 0.0 3.981072435067408 0.0 15 9.520907913778658E-5 0.0 0.0 4.082946149744839 0.0 16 9.520907913778658E-5 0.0 0.0 4.315827557315866 0.0 17 9.520907913778658E-5 0.0 0.0 4.58017556554193 0.0 18 9.520907913778658E-5 0.0 0.0 4.889795490898012 0.0 19 9.520907913778658E-5 0.0 0.0 5.058125142813619 0.0 20 9.520907913778658E-5 0.0 0.0 5.244925356081956 0.0 21 9.520907913778658E-5 0.0 0.0 5.490755198415721 0.0 22 9.520907913778658E-5 0.0 0.0 5.741631121943788 0.0 23 9.520907913778658E-5 0.0 0.0 5.999504912788484 0.0 24 9.520907913778658E-5 0.0 0.0 6.192922157056897 0.0 25 9.520907913778658E-5 0.0 0.0 6.357395841267423 0.0 26 9.520907913778658E-5 0.0 0.0 6.52529705232691 0.0 27 9.520907913778658E-5 0.0 0.0 6.712144870134816 0.0 28 9.520907913778658E-5 0.0 0.0 6.889900220885064 0.0 29 9.520907913778658E-5 0.0 0.0 7.090410541549242 0.0 30 9.520907913778658E-5 0.0 0.0 7.321673394774926 0.0 31 9.520907913778658E-5 0.0 0.0 7.538083631655114 0.0 32 9.520907913778658E-5 0.0 0.0 7.735214030009902 0.0 33 9.520907913778658E-5 0.0 0.0 7.933534541853911 0.0 34 9.520907913778658E-5 0.0 0.0 8.144613070302384 0.0 35 9.520907913778658E-5 0.0 0.0 8.395727016528296 0.0 36 9.520907913778658E-5 0.0 0.0 8.601949881940742 0.0 37 9.520907913778658E-5 0.0 0.0 8.826167263310229 0.0 38 9.520907913778658E-5 0.0 0.0 9.06704623352883 0.0 39 9.520907913778658E-5 0.0 0.0 9.444788255007998 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTCGCG 25 3.891912E-5 45.000004 1 CCCGATA 20 7.0346205E-4 45.000004 31 CGTTTTT 7285 0.0 41.571724 1 TATAACG 45 1.929584E-8 40.000004 1 GACCGAT 1020 0.0 39.264706 9 TCGATCA 110 0.0 38.863636 17 ACACGCG 280 0.0 38.57143 36 CCGCTAT 35 6.250759E-6 38.57143 31 CGGTCTA 200 0.0 38.250004 31 GGCGATA 630 0.0 37.85714 8 GGACCGA 1125 0.0 37.8 8 TAGGGCG 685 0.0 37.77372 5 AACGCTA 30 1.1402434E-4 37.500004 30 GGGCGAT 2885 0.0 37.43501 7 TAGGGAC 1795 0.0 37.103065 5 TCCGCGA 85 0.0 37.058826 23 ATTGGGT 765 0.0 36.764706 4 ATAGCGG 490 0.0 36.734695 2 CGTAAGG 350 0.0 36.64286 2 TATAGCG 185 0.0 36.48649 1 >>END_MODULE