##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547887_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1876652 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.478646014285015 31.0 31.0 33.0 30.0 34.0 2 31.831995489840416 31.0 31.0 34.0 30.0 34.0 3 31.55947186798618 31.0 31.0 34.0 30.0 34.0 4 35.52398899742733 37.0 35.0 37.0 33.0 37.0 5 35.56804031860995 37.0 35.0 37.0 33.0 37.0 6 35.66589490219817 37.0 35.0 37.0 33.0 37.0 7 36.02592702323073 37.0 35.0 37.0 35.0 37.0 8 36.0673337411518 37.0 35.0 37.0 35.0 37.0 9 37.823614607290004 39.0 38.0 39.0 35.0 39.0 10 37.39218619115318 39.0 37.0 39.0 35.0 39.0 11 37.10560775252951 39.0 37.0 39.0 33.0 39.0 12 36.72187651200116 39.0 35.0 39.0 33.0 39.0 13 36.607853240771334 39.0 35.0 39.0 33.0 39.0 14 37.743372239498854 40.0 36.0 41.0 33.0 41.0 15 37.87665161148684 40.0 36.0 41.0 33.0 41.0 16 37.94976319530739 40.0 36.0 41.0 33.0 41.0 17 37.86971372422804 40.0 36.0 41.0 33.0 41.0 18 37.674372233104485 39.0 36.0 41.0 33.0 41.0 19 37.49751259157265 39.0 36.0 41.0 33.0 41.0 20 37.24237418551761 39.0 35.0 41.0 33.0 41.0 21 37.129285024607654 39.0 35.0 41.0 32.0 41.0 22 37.041900682705155 39.0 35.0 41.0 32.0 41.0 23 36.932921500629845 38.0 35.0 41.0 32.0 41.0 24 36.90811775438387 38.0 35.0 41.0 32.0 41.0 25 36.82524836783804 38.0 35.0 41.0 32.0 41.0 26 36.703964826723336 38.0 35.0 41.0 32.0 41.0 27 36.60532640041947 38.0 35.0 41.0 31.0 41.0 28 36.5051320116889 38.0 35.0 40.0 31.0 41.0 29 36.47590709412294 38.0 35.0 40.0 31.0 41.0 30 36.33341983489747 38.0 35.0 40.0 31.0 41.0 31 36.11498082755887 38.0 35.0 40.0 30.0 41.0 32 35.8318036588563 38.0 35.0 40.0 30.0 41.0 33 35.577679825561695 38.0 35.0 40.0 29.0 41.0 34 35.30329331170616 38.0 35.0 40.0 26.0 41.0 35 35.07879670818031 38.0 34.0 40.0 25.0 41.0 36 34.91617732003589 38.0 34.0 40.0 24.0 41.0 37 34.78082191050871 38.0 34.0 40.0 23.0 41.0 38 34.64360147752487 37.0 34.0 40.0 23.0 41.0 39 34.557388903217 37.0 34.0 40.0 23.0 41.0 40 34.42041518619328 37.0 34.0 40.0 22.0 41.0 41 34.32880416827414 37.0 34.0 40.0 22.0 41.0 42 34.24016120197032 37.0 34.0 40.0 21.0 41.0 43 34.16159255951556 37.0 33.0 40.0 21.0 41.0 44 33.984459025967524 36.0 33.0 40.0 21.0 41.0 45 33.843289539030145 36.0 33.0 40.0 20.0 41.0 46 33.80549883515963 36.0 33.0 40.0 20.0 41.0 47 33.74316388973555 36.0 33.0 40.0 20.0 41.0 48 33.631210261678774 36.0 33.0 40.0 20.0 41.0 49 33.488996894469516 36.0 33.0 40.0 19.0 41.0 50 33.42108286459077 35.0 33.0 40.0 19.0 41.0 51 33.133100329736145 35.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 6.0 12 5.0 13 6.0 14 15.0 15 63.0 16 146.0 17 357.0 18 807.0 19 1674.0 20 2908.0 21 4740.0 22 7447.0 23 11425.0 24 17999.0 25 27986.0 26 37483.0 27 41614.0 28 41069.0 29 41742.0 30 45237.0 31 52589.0 32 63242.0 33 82204.0 34 133297.0 35 212518.0 36 158386.0 37 171012.0 38 251856.0 39 468741.0 40 74.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.215564739759955 23.126450721817367 27.82082133501576 18.837163203406917 2 36.21912853315372 24.316335687170557 27.732952087014535 11.731583692661186 3 27.554069694327982 23.715744847739483 36.207725246875825 12.522460211056712 4 23.75773451870672 26.52532275563077 36.24310740616801 13.473835319494503 5 21.72123547679591 30.48556684990078 34.64526188126515 13.147935792038162 6 19.90864582245403 38.19354893714977 31.82044406741367 10.077361172982524 7 82.42353936691512 3.5347523142276778 12.380345423658728 1.6613628951984705 8 82.89832105259792 2.963415699874031 12.173700824660086 1.9645624228679586 9 78.21871076789942 5.588622717477721 13.58253954382592 2.6101269707969297 10 39.066699633176526 32.55574288680054 19.18149981989202 9.196057660130915 11 28.663332359968713 24.547811741335103 31.17850299362908 15.61035290506711 12 27.848690114096808 23.720700481495772 32.06252411208897 16.368085292318447 13 21.393044634807094 30.874557456576923 32.06859875991926 15.663799148696722 14 16.39781909485616 34.38122784618565 32.649633496247574 16.571319562710617 15 14.993882723062136 29.250601603280735 40.4682914040536 15.287224269603527 16 18.496023769990387 27.25278847649964 38.69651912022048 15.554668633289495 17 18.054492788220724 27.014811483429003 32.133768008133636 22.796927720216644 18 19.71452352380729 28.627950200676523 34.73744732640894 16.92007894910724 19 22.566996971201906 30.144001125408444 30.29608046670347 16.992921436686185 20 23.63693428509921 29.9666640378717 29.89344854560142 16.50295313142767 21 20.940536657835338 29.90703657364285 32.38527974286122 16.76714702566059 22 20.561830323363097 27.03191641284586 32.082453219883064 20.32380004390798 23 17.194716974697492 31.420263319997527 31.83360580437929 19.55141390092569 24 18.072024008713388 29.6596811769044 35.60159262345922 16.666702190922983 25 18.167086918618903 31.077578581431187 33.316299452429114 17.439035047520797 26 17.401574719234038 34.158544045459685 29.96634431956484 18.473536915741438 27 16.99340101414647 32.920701334077926 32.682990772929664 17.402906878845943 28 15.730407129291951 31.268237265086974 36.22594919036668 16.7754064152544 29 17.162052421013595 29.470514512013946 35.147912346028996 18.219520720943468 30 18.086784337213295 30.847328114109594 34.03598536116446 17.029902187512654 31 22.764582884839598 30.000927183089885 30.198566383112052 17.035923548958465 32 22.82794039598178 30.884841728780827 30.094231642307683 16.192986232929705 33 21.15320261827979 31.142960975183463 29.915509108774565 17.788327297762187 34 18.266998889511747 31.130118956524704 31.91593326839499 18.686948885568555 35 17.826427062662656 31.640176228730738 31.72735275373378 18.806043954872827 36 22.116780308762625 31.474988436854566 29.601545731440886 16.80668552294192 37 19.05664982106432 33.26056189426703 30.681873890311046 17.00091439435761 38 18.43746203345106 34.17900601709854 28.872161700730874 18.511370248719526 39 18.509345366109432 32.738834903860706 29.26669409139254 19.485125638637317 40 20.507051920121576 31.3008485323864 29.55641216378956 18.635687383702464 41 17.539160163951546 30.28680863580461 30.555904877409347 21.618126322834495 42 20.061897464207533 31.42015674722857 28.42929855934931 20.08864722921458 43 19.927722348096506 31.363140315839054 29.113016158563227 19.59612117750121 44 19.223702636397157 33.28198302082645 29.088557708088658 18.40575663468773 45 17.896445371864363 34.662846388142285 27.771371570221863 19.669336669771486 46 19.999232676063546 32.69892340188804 28.686511937215855 18.615331984832565 47 19.228072119924207 32.009664018688596 29.6717771861805 19.090486675206698 48 19.451981507493134 30.748695016444177 30.518444549122588 19.280878926940105 49 19.17942165089745 29.76987742000115 30.653525533769717 20.397175395331686 50 17.66539560877563 31.859609560003666 31.131824120827943 19.343170710392762 51 17.345037865304807 32.67142762749833 29.848474837103524 20.135059670093337 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1971.0 1 2617.0 2 3263.0 3 36609.5 4 69956.0 5 46908.0 6 23860.0 7 21789.0 8 19718.0 9 22614.0 10 25510.0 11 28447.0 12 31384.0 13 31402.5 14 31421.0 15 29440.5 16 27460.0 17 25025.0 18 22590.0 19 20496.5 20 18403.0 21 18267.0 22 18131.0 23 17694.0 24 17257.0 25 17500.0 26 20286.0 27 22829.0 28 26249.0 29 29669.0 30 34492.5 31 39316.0 32 44186.5 33 49057.0 34 54173.5 35 59290.0 36 63850.0 37 68410.0 38 72702.5 39 76995.0 40 90154.5 41 103314.0 42 116569.0 43 129824.0 44 133645.5 45 137467.0 46 141732.0 47 145997.0 48 146715.5 49 147434.0 50 137123.5 51 126813.0 52 113620.0 53 100427.0 54 87691.0 55 74955.0 56 70498.0 57 66041.0 58 58501.0 59 50961.0 60 45206.0 61 39451.0 62 33863.0 63 28275.0 64 24222.0 65 20169.0 66 16073.0 67 11977.0 68 9758.0 69 7539.0 70 6134.5 71 4730.0 72 3740.0 73 2750.0 74 2393.5 75 1534.5 76 1032.0 77 810.0 78 588.0 79 438.5 80 289.0 81 234.5 82 180.0 83 124.5 84 69.0 85 59.0 86 49.0 87 36.0 88 23.0 89 20.5 90 18.0 91 12.0 92 6.0 93 4.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1876652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.007218338185616 #Duplication Level Percentage of deduplicated Percentage of total 1 74.63850607807552 18.665014179304293 2 8.143503398904198 4.072927350683079 3 3.651379501064541 2.739325332560887 4 2.1298610324535527 2.1304759947423775 5 1.3809030515108245 1.7266272056498986 6 0.9349535780185835 1.4028352956947145 7 0.7436350411782687 1.3017370687069434 8 0.5646395376848642 1.1296051361006068 9 0.4655171304662551 1.0477159669561753 >10 5.890659299779292 33.95759095898709 >50 1.3101184330936895 22.59529922967744 >100 0.14113666423331866 4.7215511789183395 >500 0.0025936267685271823 0.45250235043086023 >1k 0.0021613556404393186 0.7919331627464123 >5k 2.161355640439319E-4 0.29143486305819377 >10k+ 2.161355640439319E-4 2.973424725782718 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55013 2.9314438691883207 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5392 0.2873201850955851 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTT 2228 0.11872206461293835 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2006 0.10689248725922547 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05936103230646918 0.0 2 0.0 0.0 0.0 0.1775502330746457 0.0 3 0.0 0.0 0.0 0.3281375556043422 0.0 4 0.0 0.0 0.0 0.4743553946069916 0.0 5 0.0 0.0 0.0 0.8622269872091363 0.0 6 0.0 0.0 0.0 1.5146121923510592 0.0 7 0.0 0.0 0.0 1.969624629393196 0.0 8 0.0 0.0 0.0 2.7068417586212044 0.0 9 0.0 0.0 0.0 3.18295560391591 0.0 10 0.0 0.0 0.0 3.731538932098226 0.0 11 0.0 0.0 0.0 4.192572730586171 0.0 12 0.0 0.0 0.0 4.531580708623656 0.0 13 0.0 0.0 0.0 4.7060403313986825 0.0 14 0.0 0.0 0.0 4.808616621515337 0.0 15 0.0 0.0 0.0 4.898457465742183 0.0 16 0.0 0.0 0.0 5.055385868024546 0.0 17 0.0 0.0 0.0 5.240929058770619 0.0 18 0.0 0.0 0.0 5.482316380447734 0.0 19 0.0 0.0 0.0 5.615745487176099 0.0 20 0.0 0.0 0.0 5.759299006954939 0.0 21 0.0 0.0 0.0 5.923580930295015 0.0 22 0.0 0.0 0.0 6.102196891059184 0.0 23 0.0 0.0 0.0 6.304791724837636 0.0 24 0.0 0.0 0.0 6.459055807896189 0.0 25 0.0 0.0 0.0 6.59520252023284 0.0 26 0.0 0.0 0.0 6.719093364139969 0.0 27 0.0 0.0 0.0 6.8585971186986185 0.0 28 0.0 0.0 0.0 7.002310497630887 0.0 29 0.0 0.0 0.0 7.163128805980011 0.0 30 0.0 0.0 0.0 7.372917301662748 0.0 31 0.0 0.0 0.0 7.530644999712253 0.0 32 0.0 0.0 0.0 7.691676453599282 0.0 33 0.0 0.0 0.0 7.849244292495359 0.0 34 0.0 0.0 0.0 8.016616826135053 0.0 35 0.0 0.0 0.0 8.213296871236649 0.0 36 0.0 0.0 0.0 8.388502503394342 0.0 37 0.0 0.0 0.0 8.563068698938322 0.0 38 0.0 0.0 0.0 8.752981373211442 0.0 39 0.0 0.0 0.0 9.027566112417219 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGC 20 7.0344284E-4 45.000004 8 AATGCGT 20 7.0344284E-4 45.000004 17 CGTTTTT 16695 0.0 43.948784 1 TAGTGCG 145 0.0 43.448273 1 CGACGGT 240 0.0 43.124996 28 TAATACG 65 0.0 41.538464 1 TCACGAC 255 0.0 41.47059 25 CACGACG 250 0.0 41.4 26 CTATGCG 120 0.0 41.249996 1 AGGGCGA 1385 0.0 41.10108 6 TATACGG 170 0.0 41.02941 2 ACATACG 445 0.0 40.95506 17 TCGAACG 55 6.184564E-11 40.909092 28 TAGCACG 50 1.0822987E-9 40.5 1 CGGTTTT 1675 0.0 40.298508 1 TAGTACG 45 1.929402E-8 40.000004 1 TAGGGCG 590 0.0 39.66102 5 GCGATCG 125 0.0 39.600002 9 TAGGGAC 1965 0.0 39.045803 5 GGGCGAT 2785 0.0 39.021545 7 >>END_MODULE