SRR1547884_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547884_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1711308
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8699	0.5083246265429717	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4856	0.28375955701720557	No Hit
GAGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT	2150	0.1256348944783756	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1792	0.10471522367686004	No Hit
AAGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT	1725	0.100800089755906	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGC	30	2.1661253E-6	45.000004	18
GCGAAAC	30	2.1661253E-6	45.000004	43
CGTTGCA	30	2.1661253E-6	45.000004	19
ATTACGA	30	2.1661253E-6	45.000004	30
CCATGCG	60	0.0	45.000004	1
TGCGCAC	30	2.1661253E-6	45.000004	13
CGTAACA	30	2.1661253E-6	45.000004	19
ATCGCTA	30	2.1661253E-6	45.000004	10
AGCGTAT	25	3.891609E-5	45.0	14
TCGCATA	20	7.034256E-4	45.0	36
CGAACTA	20	7.034256E-4	45.0	39
CGAACGC	25	3.891609E-5	45.0	13
CGACGGT	255	0.0	45.0	28
CGACGAT	50	2.1827873E-11	45.0	36
CTATCGT	45	3.8562575E-10	45.0	13
CGTCTAG	20	7.034256E-4	45.0	39
ATCCGAT	20	7.034256E-4	45.0	44
GTAGCGA	35	1.2123928E-7	45.0	34
TGACCTA	20	7.034256E-4	45.0	31
CGTAGTC	20	7.034256E-4	45.0	18