SRR1547883_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547883_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1969501
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8798	0.4467121367290497	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3735	0.18964194483780408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	65	0.0	45.000004	1
ACTATCG	20	7.034515E-4	45.0	14
CACGCAT	40	6.8193913E-9	45.0	26
ATTCGTT	20	7.034515E-4	45.0	14
ATTAACG	20	7.034515E-4	45.0	1
ATATCGT	20	7.034515E-4	45.0	35
TTGCCGA	25	3.891823E-5	45.0	29
TAAGTCG	30	2.1662945E-6	44.999996	1
ACGTTAG	110	0.0	42.954544	1
CGACGGT	245	0.0	42.2449	28
CGGTCTA	250	0.0	41.399998	31
GCGATAA	185	0.0	41.351353	9
CGTTTCG	60	3.6379788E-12	41.249996	42
CGGGTAC	225	0.0	41.0	6
TAACGGG	410	0.0	40.609756	3
GGCGATA	555	0.0	40.54054	8
CGTTTTT	4930	0.0	40.025352	1
TCGCTAA	45	1.929584E-8	40.000004	30
CCACGCA	45	1.929584E-8	40.000004	25
CGAATAT	130	0.0	39.807693	14