##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547883_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1969501 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.570484604983697 31.0 31.0 33.0 30.0 34.0 2 31.989941614652647 31.0 31.0 34.0 30.0 34.0 3 32.03969787270989 33.0 31.0 34.0 30.0 34.0 4 35.8108282250174 37.0 35.0 37.0 35.0 37.0 5 35.714407354959455 37.0 35.0 37.0 33.0 37.0 6 35.76944261515988 37.0 35.0 37.0 35.0 37.0 7 36.05361713449244 37.0 35.0 37.0 35.0 37.0 8 36.074797118661024 37.0 35.0 37.0 35.0 37.0 9 37.82969036319352 39.0 38.0 39.0 35.0 39.0 10 37.426991405437214 39.0 37.0 39.0 35.0 39.0 11 37.13967091156592 39.0 37.0 39.0 33.0 39.0 12 36.36180992038085 38.0 35.0 39.0 33.0 39.0 13 36.050115739976775 38.0 35.0 39.0 32.0 39.0 14 36.99243412417663 39.0 35.0 41.0 32.0 41.0 15 37.22688234227858 39.0 35.0 41.0 32.0 41.0 16 37.378453222415224 39.0 35.0 41.0 33.0 41.0 17 37.31377135629786 39.0 35.0 41.0 33.0 41.0 18 37.23615169527713 39.0 35.0 41.0 33.0 41.0 19 37.13804258032872 38.0 35.0 41.0 32.0 41.0 20 36.98683118211161 38.0 35.0 41.0 32.0 41.0 21 36.84809502508504 38.0 35.0 41.0 32.0 41.0 22 36.78175791736079 38.0 35.0 41.0 32.0 41.0 23 36.72410930484422 38.0 35.0 41.0 32.0 41.0 24 36.735338545144174 38.0 35.0 41.0 32.0 41.0 25 36.697099417568204 38.0 35.0 41.0 32.0 41.0 26 36.584951213530736 38.0 35.0 41.0 32.0 41.0 27 36.49499086316788 38.0 35.0 40.0 31.0 41.0 28 36.44502490732424 38.0 35.0 40.0 31.0 41.0 29 36.44255321525605 38.0 35.0 40.0 31.0 41.0 30 36.382329331135146 38.0 35.0 40.0 31.0 41.0 31 36.17967546094163 38.0 35.0 40.0 31.0 41.0 32 36.02867376051091 38.0 35.0 40.0 30.0 41.0 33 35.904040160426426 38.0 35.0 40.0 30.0 41.0 34 35.741496450116045 38.0 35.0 40.0 30.0 41.0 35 35.649462478059164 38.0 35.0 40.0 29.0 41.0 36 35.50971388184114 38.0 35.0 40.0 29.0 41.0 37 35.38705286262866 37.0 34.0 40.0 28.0 41.0 38 35.26497371669271 37.0 34.0 40.0 28.0 41.0 39 35.16228222275592 37.0 34.0 40.0 27.0 41.0 40 34.93639657964124 37.0 34.0 40.0 26.0 41.0 41 34.86966394025695 37.0 34.0 40.0 25.0 41.0 42 34.796121961857345 36.0 34.0 40.0 25.0 41.0 43 34.70352998043667 36.0 34.0 40.0 25.0 41.0 44 34.4839037908587 36.0 34.0 40.0 24.0 41.0 45 34.31279649007541 36.0 34.0 40.0 23.0 41.0 46 34.306861991946185 35.0 34.0 40.0 23.0 41.0 47 34.21504584156088 35.0 33.0 40.0 23.0 41.0 48 34.154308121701895 35.0 34.0 40.0 23.0 41.0 49 34.03368822864269 35.0 33.0 40.0 24.0 41.0 50 33.926535198509676 35.0 33.0 40.0 24.0 41.0 51 33.59187377919585 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 6.0 11 7.0 12 5.0 13 19.0 14 30.0 15 84.0 16 149.0 17 365.0 18 825.0 19 1593.0 20 2728.0 21 4489.0 22 6969.0 23 10397.0 24 15447.0 25 22032.0 26 28323.0 27 32435.0 28 35284.0 29 40195.0 30 46947.0 31 56309.0 32 70437.0 33 94818.0 34 176325.0 35 280807.0 36 132460.0 37 170337.0 38 264324.0 39 475272.0 40 82.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.98043463801237 23.954290959994434 29.577948932242226 12.487325469750967 2 31.59922234109046 26.094376189704903 29.00577354365395 13.300627925550684 3 29.40445320921391 25.90651134475179 30.61252571082726 14.07650973520704 4 25.60882172692474 28.418315096057327 30.378456268872167 15.59440690814577 5 23.817505043155602 32.16896056412259 29.254262881816256 14.759271510905556 6 21.8834110772221 40.44455930715446 26.945454711624922 10.726574903998525 7 86.99041026127938 4.655240083655707 6.471029971551169 1.8833196835137427 8 87.96187460681665 3.631681324355763 6.033152559963159 2.373291508864428 9 83.36304475092929 6.0129951698425135 7.681285767308572 2.9426743119196184 10 48.853745187232704 27.20882091453622 12.968056375701256 10.969377522529818 11 41.64024288385738 22.670158583316283 20.98364001846153 14.705958514364806 12 38.40851058212207 21.556018504179487 24.188817370491307 15.846653543207138 13 23.925501941862432 35.005465851502485 24.82745629476705 16.24157591186803 14 17.502098247220996 37.87126789983859 28.81496379032049 15.811670062619923 15 16.39466037336361 25.50854251914571 42.50228865078007 15.59450845671061 16 20.181558679076577 22.154494971061197 40.282995540494774 17.380950809367448 17 20.214257316954903 22.16063865923399 27.41024249289541 30.214861530915698 18 24.403389487997213 24.639946869790876 31.065940052835717 19.89072358937619 19 27.76804886110746 27.30356572553149 24.908542823791407 20.01984258956964 20 30.53311473312276 25.80633368553761 24.527786479925627 19.132765101414012 21 23.652996368115577 27.70046829120676 29.059391185889215 19.587144154788447 22 23.408619746829274 23.933676601332014 27.774547969257185 24.883155682581524 23 21.04020256907714 29.622884172183717 25.82984217829796 23.50707108044119 24 21.251068163966405 26.04878088409196 33.75570766402251 18.94444328791912 25 20.656095122571656 25.836798254989464 31.032581349285937 22.474525273152945 26 19.188109069251553 32.19125047410486 26.748348947271417 21.87229150937217 27 19.424107933938597 31.094069005296266 29.527834715493924 19.953988345271213 28 16.75043577027887 29.58185855198855 34.50361284406558 19.164092833667006 29 18.232181654134727 26.950836785561417 34.2585253828254 20.558456177478458 30 21.046244708685094 28.08675903185629 31.558653689437072 19.308342570021544 31 27.74068152288321 27.409023910117337 25.467770770362648 19.382523796636814 32 28.673709736628723 27.28107271841954 26.151903451686493 17.893314093265246 33 26.522149519091382 28.087368323245332 25.105851685274594 20.28463047238869 34 20.24294478652207 29.199782076779858 28.500975627836695 22.05629750886138 35 20.77368836065582 28.512704487075663 29.154135996884488 21.559471155384028 36 28.172009052039073 26.79201483015241 26.13733123263202 18.8986448851765 37 21.87010821522812 30.673353301166134 27.731389829200392 19.725148654405356 38 22.363786563195447 31.121994860627133 23.94474539489952 22.569473181277896 39 21.43218002935769 28.918137132197447 27.072491966239166 22.5771908722057 40 24.210954957626324 25.93230468022103 26.79211637871725 23.064623983435396 41 19.016491994672762 24.76007882199603 28.31707117691232 27.906358006418884 42 23.56764479936796 25.863302430412578 25.44334834051874 25.125704429700725 43 23.293362125736415 26.006790552530816 26.76276884347863 23.937078478254136 44 21.742157023530325 28.917680163655668 27.610496262758943 21.729666550055065 45 19.606844576367312 32.96459356964023 24.697524906054884 22.731036947937575 46 23.58506037823794 29.159365747973727 26.284170457389965 20.971403416398367 47 22.033449081772492 28.016385876422508 27.10884635245171 22.841318689353294 48 23.822023954290962 25.988308713730024 28.521945406476057 21.66772192550296 49 23.099556689740194 24.003135819682246 29.555557473695117 23.341750016882447 50 20.21080466575036 29.403183852153415 28.163428198310132 22.222583283786097 51 19.37500920283869 31.0694942526051 25.742967381077747 23.812529163478466 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1578.0 1 2543.0 2 3508.0 3 9409.5 4 15311.0 5 11748.5 6 8186.0 7 7952.5 8 7719.0 9 8501.0 10 9283.0 11 9557.0 12 9831.0 13 9629.5 14 9428.0 15 9324.0 16 9220.0 17 8985.0 18 8750.0 19 8840.0 20 8930.0 21 9725.5 22 10521.0 23 10844.0 24 11167.0 25 12578.0 26 15866.0 27 17743.0 28 20469.0 29 23195.0 30 25858.0 31 28521.0 32 33085.0 33 37649.0 34 42743.5 35 47838.0 36 50794.0 37 53750.0 38 64925.0 39 76100.0 40 97321.5 41 118543.0 42 138962.0 43 159381.0 44 164509.5 45 169638.0 46 167109.0 47 164580.0 48 162505.5 49 160431.0 50 155252.5 51 150074.0 52 136827.0 53 123580.0 54 113943.0 55 104306.0 56 97035.0 57 89764.0 58 85813.5 59 81863.0 60 75805.5 61 69748.0 62 62126.5 63 54505.0 64 46058.5 65 37612.0 66 32618.0 67 27624.0 68 22969.0 69 18314.0 70 14629.5 71 10945.0 72 9094.5 73 7244.0 74 5821.5 75 3556.5 76 2714.0 77 1848.5 78 983.0 79 742.5 80 502.0 81 401.5 82 301.0 83 214.0 84 127.0 85 91.5 86 56.0 87 38.0 88 20.0 89 17.5 90 15.0 91 12.0 92 9.0 93 7.0 94 5.0 95 2.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1969501.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.70204709243856 #Duplication Level Percentage of deduplicated Percentage of total 1 79.3014487743151 15.624008782501605 2 7.8469434678711005 3.0920169947139917 3 2.741565181507088 1.6204333893912755 4 1.3279345166694423 1.0465211353238397 5 0.8139163135731944 0.8017908769661533 6 0.5293988558021765 0.6258144712618545 7 0.4141742958299527 0.5712057036643515 8 0.32324876922296064 0.5094929979042859 9 0.27334842932492315 0.4846971264483374 >10 3.2223593968253037 16.290492074883545 >50 2.19147195103765 31.670009277517547 >100 1.006884331188985 26.013992536203563 >500 0.00600112454064217 0.7931474559320226 >1k 0.00104367383315516 0.4041047476234124 >5k 2.6091845828879E-4 0.45227242966426434 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8798 0.4467121367290497 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3735 0.18964194483780408 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03894387461595602 0.0 2 0.0 0.0 0.0 0.14338657355340262 0.0 3 0.0 0.0 0.0 0.22828117375924156 0.0 4 0.0 0.0 0.0 0.4252346152654911 0.0 5 0.0 0.0 0.0 0.7375472264294357 0.0 6 0.0 0.0 0.0 1.1782679978329536 0.0 7 0.0 0.0 0.0 1.3766938935293762 0.0 8 0.0 0.0 0.0 1.874586506937544 0.0 9 0.0 0.0 0.0 2.093322115601871 0.0 10 0.0 0.0 0.0 2.496774563709285 0.0 11 0.0 0.0 0.0 2.9950733713768107 0.0 12 0.0 0.0 0.0 3.3876093487639762 0.0 13 0.0 0.0 0.0 3.561409717486815 0.0 14 0.0 0.0 0.0 3.6462535434102343 0.0 15 0.0 0.0 0.0 3.76151116450309 0.0 16 0.0 0.0 0.0 3.999388677639666 0.0 17 0.0 0.0 0.0 4.251635312701034 0.0 18 0.0 0.0 0.0 4.605887481143701 0.0 19 0.0 0.0 0.0 4.775625907272959 0.0 20 0.0 0.0 0.0 4.9632876550963925 0.0 21 0.0 0.0 0.0 5.1927874116337085 0.0 22 0.0 0.0 0.0 5.414214057266282 0.0 23 0.0 0.0 0.0 5.6560519644316 0.0 24 0.0 0.0 0.0 5.833914275748019 0.0 25 0.0 0.0035034254869634493 0.0 5.974762135180434 0.0 26 0.0 0.0035034254869634493 0.0 6.125561753967122 0.0 27 0.0 0.0035034254869634493 0.0 6.302560902482406 0.0 28 0.0 0.0035034254869634493 0.0 6.46463241196628 0.0 29 0.0 0.0035034254869634493 1.0154856483952026E-4 6.657828556573467 0.0 30 0.0 0.0035034254869634493 1.0154856483952026E-4 6.878595136534584 0.0 31 0.0 0.0035034254869634493 1.0154856483952026E-4 7.073923801003401 0.0 32 0.0 0.0035034254869634493 1.0154856483952026E-4 7.252700049403376 0.0 33 0.0 0.0035034254869634493 1.0154856483952026E-4 7.434471980466118 0.0 34 0.0 0.0035034254869634493 1.0154856483952026E-4 7.630460710606392 0.0 35 0.0 0.0035034254869634493 2.5387141209880064E-4 7.873567974832204 0.0 36 0.0 0.0035034254869634493 2.5387141209880064E-4 8.072450839070404 0.0 37 0.0 0.0035034254869634493 2.5387141209880064E-4 8.291084899169892 0.0 38 0.0 0.0035034254869634493 2.5387141209880064E-4 8.529724026542764 0.0 39 0.0 0.0035034254869634493 2.5387141209880064E-4 8.928860660644498 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 65 0.0 45.000004 1 ACTATCG 20 7.034515E-4 45.0 14 CACGCAT 40 6.8193913E-9 45.0 26 ATTCGTT 20 7.034515E-4 45.0 14 ATTAACG 20 7.034515E-4 45.0 1 ATATCGT 20 7.034515E-4 45.0 35 TTGCCGA 25 3.891823E-5 45.0 29 TAAGTCG 30 2.1662945E-6 44.999996 1 ACGTTAG 110 0.0 42.954544 1 CGACGGT 245 0.0 42.2449 28 CGGTCTA 250 0.0 41.399998 31 GCGATAA 185 0.0 41.351353 9 CGTTTCG 60 3.6379788E-12 41.249996 42 CGGGTAC 225 0.0 41.0 6 TAACGGG 410 0.0 40.609756 3 GGCGATA 555 0.0 40.54054 8 CGTTTTT 4930 0.0 40.025352 1 TCGCTAA 45 1.929584E-8 40.000004 30 CCACGCA 45 1.929584E-8 40.000004 25 CGAATAT 130 0.0 39.807693 14 >>END_MODULE