SRR1547882_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547882_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1769393
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41668	2.354931889071563	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4308	0.24347332672843172	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTT	4194	0.23703043925233117	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTC	3205	0.1811355645693184	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCT	2746	0.15519446499449246	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	1819	0.10280361683356948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.034319E-4	45.000004	1
CGTTTTT	16350	0.0	43.98165	1
CGGTCTA	155	0.0	42.096775	31
CGACGGT	150	0.0	42.000004	28
CGGTTTT	1430	0.0	41.223778	1
ATAGCGG	265	0.0	40.75472	2
TCACGAC	155	0.0	40.645164	25
CACGACC	515	0.0	40.194176	27
CCGCTCG	45	1.929402E-8	40.000004	19
AGGGCGC	225	0.0	40.0	6
CACGTGA	445	0.0	39.94382	43
TTCGTAG	130	0.0	39.807693	1
TACGGGA	840	0.0	39.642857	4
GCGAGAC	540	0.0	39.583336	21
CGTTAGG	195	0.0	39.23077	2
CGGGAGT	340	0.0	39.04412	6
GTAGCCG	110	0.0	38.863636	43
ACGACCA	540	0.0	38.750004	28
ACACGAC	535	0.0	38.69159	26
TATCGTG	35	6.2501986E-6	38.57143	1