##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547880_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2618379 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51469325105342 31.0 31.0 33.0 30.0 34.0 2 31.936540508459622 31.0 31.0 34.0 30.0 34.0 3 31.943648341206526 33.0 31.0 34.0 30.0 34.0 4 35.746864758692304 37.0 35.0 37.0 35.0 37.0 5 35.700585362164915 37.0 35.0 37.0 33.0 37.0 6 35.750628537732695 37.0 35.0 37.0 33.0 37.0 7 36.04678237947982 37.0 35.0 37.0 35.0 37.0 8 36.073725003141256 37.0 35.0 37.0 35.0 37.0 9 37.83104164828698 39.0 38.0 39.0 35.0 39.0 10 37.381156814960704 39.0 37.0 39.0 35.0 39.0 11 37.112884345619946 39.0 37.0 39.0 33.0 39.0 12 36.60398704694775 39.0 35.0 39.0 33.0 39.0 13 36.44235154651027 39.0 35.0 39.0 32.0 39.0 14 37.50434753715944 40.0 35.0 41.0 33.0 41.0 15 37.69101149986308 40.0 35.0 41.0 33.0 41.0 16 37.7667289571143 40.0 35.0 41.0 33.0 41.0 17 37.70292001272543 40.0 35.0 41.0 33.0 41.0 18 37.5946973299129 39.0 36.0 41.0 33.0 41.0 19 37.49448952959064 39.0 36.0 41.0 33.0 41.0 20 37.334411481301984 39.0 35.0 41.0 32.0 41.0 21 37.226616925968315 39.0 35.0 41.0 32.0 41.0 22 37.15061341387171 39.0 35.0 41.0 32.0 41.0 23 37.05037811562039 39.0 35.0 41.0 32.0 41.0 24 37.07533477773844 39.0 35.0 41.0 32.0 41.0 25 37.03767598197205 39.0 35.0 41.0 32.0 41.0 26 36.926797839426605 39.0 35.0 41.0 32.0 41.0 27 36.85659753610917 39.0 35.0 41.0 32.0 41.0 28 36.78327125293932 39.0 35.0 41.0 31.0 41.0 29 36.78080904254121 38.0 35.0 41.0 31.0 41.0 30 36.68746579467678 38.0 35.0 41.0 31.0 41.0 31 36.51523442557399 38.0 35.0 41.0 31.0 41.0 32 36.35778051993237 38.0 35.0 41.0 30.0 41.0 33 36.2342143746188 38.0 35.0 41.0 30.0 41.0 34 36.05219870767372 38.0 35.0 41.0 30.0 41.0 35 35.92676155743687 38.0 35.0 41.0 29.0 41.0 36 35.811832053342926 38.0 35.0 41.0 29.0 41.0 37 35.708984451830695 38.0 35.0 40.0 28.0 41.0 38 35.61186902278089 38.0 35.0 40.0 28.0 41.0 39 35.527823512180625 38.0 35.0 40.0 27.0 41.0 40 35.38436299710622 38.0 35.0 40.0 27.0 41.0 41 35.322323468069364 38.0 34.0 40.0 26.0 41.0 42 35.23937061823365 38.0 34.0 40.0 26.0 41.0 43 35.183439830521095 38.0 34.0 40.0 26.0 41.0 44 34.96604005760816 38.0 34.0 40.0 25.0 41.0 45 34.85174873461787 37.0 34.0 40.0 24.0 41.0 46 34.82893003648441 37.0 34.0 40.0 25.0 41.0 47 34.764353823491554 37.0 34.0 40.0 24.0 41.0 48 34.65870983535997 37.0 34.0 40.0 24.0 41.0 49 34.519355295776506 37.0 34.0 40.0 24.0 41.0 50 34.45919784721769 37.0 34.0 40.0 24.0 41.0 51 34.12966763023993 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 5.0 12 3.0 13 14.0 14 28.0 15 86.0 16 193.0 17 449.0 18 968.0 19 1840.0 20 3232.0 21 5402.0 22 8366.0 23 12378.0 24 18779.0 25 27872.0 26 37326.0 27 42965.0 28 45989.0 29 50101.0 30 57863.0 31 69724.0 32 86897.0 33 113758.0 34 198066.0 35 287824.0 36 186375.0 37 247539.0 38 392053.0 39 722184.0 40 96.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.95903992508342 25.23267258101291 29.650291267994433 14.157996225909237 2 31.725812038669726 26.174591226098286 28.989959054819796 13.109637680412195 3 28.710664116997574 24.929316955261253 32.29792172943642 14.062097198304752 4 25.546492696435468 27.40497078535995 31.731388007618456 15.31714851058613 5 23.232732923690573 31.946101003712602 30.22163712739829 14.599528945198536 6 22.44117448238013 40.172412015220104 26.850620173779273 10.535793328620494 7 88.64759456136792 3.105470980327905 6.778545046381749 1.4683894119224146 8 89.30464229968236 2.4547248507568993 6.5288867654377 1.7117460841230396 9 84.2354372686307 5.288615590027265 7.927805714909873 2.548141426432155 10 42.08649702735929 34.89628506797526 13.141107532561177 9.876110372104268 11 33.70073621885907 21.91661329395019 27.70569119290981 16.676959294280927 12 31.36016596527852 20.97545848022765 29.944328151119453 17.720047403374377 13 23.877406593927006 28.391268032626293 30.259675929267686 17.471649444179015 14 18.465241280960473 31.66566031884613 31.224700473078954 18.644397927114447 15 17.13636566746067 26.00666290097805 39.78228514664989 17.07468628491139 16 21.526639191652546 23.293877624285866 37.02493030993603 18.154552874125557 17 21.759836906727408 23.074543448446537 29.264327280351697 25.901292364474354 18 23.13801783469849 24.952575620259708 31.98585842614839 19.923548118893407 19 25.72209752675224 26.16718206187874 27.946145305931648 20.164575105437372 20 27.009497097249863 26.46855172608702 27.42551784902033 19.09643332764279 21 24.517191743441266 25.806615467050413 31.00681757682902 18.669375212679295 22 23.836121508765537 23.217876403683345 29.65334659344579 23.292655494105322 23 20.828420942881074 26.787947810458302 29.521394725515286 22.862236521145334 24 20.63360575378889 25.33697375360863 34.017344318755995 20.01207617384649 25 20.818949433981864 26.63014025089569 31.313954167826736 21.236956147295714 26 20.147350708205344 30.031710459028275 28.01725800581199 21.803680826954384 27 19.597124785984 29.38016230652629 30.698688005059623 20.32402490243009 28 18.116093965006595 27.459775685643674 34.30622534018185 20.117905009167885 29 19.300032577407624 26.09561106318069 33.22154661338179 21.382809746029892 30 21.107066624044876 26.866393291421907 31.58289919068248 20.443640893850738 31 25.19302973328155 25.982678596184893 28.179572170415362 20.644719500118203 32 25.175347037231816 26.619828527497358 28.453138373016284 19.75168606225455 33 24.479764006662137 26.532713560565526 28.33684504802399 20.65067738474835 34 20.856644511737986 26.94697750020146 30.0527540130745 22.143623974986053 35 21.14182095105407 26.567658845415426 30.385020655909628 21.905499547620874 36 25.328571608617395 25.776520511354544 28.58982599539639 20.305081884631676 37 21.378608673534274 28.26473936737195 29.890096124357857 20.46655583473592 38 21.02132655356616 28.553658580365944 27.898023930072767 22.526990935995133 39 20.974350924751537 27.36754304858082 28.90181291554813 22.756293111119515 40 23.164904698670437 25.57395243392954 28.342039101291295 22.919103766108726 41 20.011579683460646 24.916026289547847 29.670036308723834 25.402357718267677 42 21.63537058615273 25.99871905480452 28.48995504470514 23.87595531433761 43 21.746240708468868 25.863673669854514 29.352702569032214 23.037383052644405 44 20.95174151641149 27.925674625407552 29.311150142893755 21.811433715287208 45 20.21426233559007 29.698679984830314 27.205725374363297 22.881332305216322 46 22.659171953334486 27.970320568565516 28.081496223426782 21.289011254673216 47 21.856958064512433 26.676352048347468 29.30202235810782 22.164667529032275 48 21.79226154807994 25.90862514555761 30.38051405086888 21.91859925549357 49 21.654046262974152 24.75760766489496 30.49657822645232 23.091767845678568 50 20.51406614550453 27.34737790060186 29.734274526338623 22.404281427554988 51 19.79629381384437 28.07362876038954 28.256413605517 23.873663820249096 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1252.0 1 2245.5 2 3239.0 3 17302.0 4 31365.0 5 23041.5 6 14718.0 7 13555.5 8 12393.0 9 12719.0 10 13045.0 11 13242.0 12 13439.0 13 13343.0 14 13247.0 15 12608.0 16 11969.0 17 11488.0 18 11007.0 19 11062.5 20 11118.0 21 11478.0 22 11838.0 23 12710.0 24 13582.0 25 17044.5 26 22726.5 27 24946.0 28 31160.0 29 37374.0 30 44024.0 31 50674.0 32 57437.0 33 64200.0 34 71750.0 35 79300.0 36 85871.5 37 92443.0 38 103393.5 39 114344.0 40 133749.5 41 153155.0 42 170054.0 43 186953.0 44 194696.0 45 202439.0 46 205887.5 47 209336.0 48 207524.0 49 205712.0 50 198414.5 51 191117.0 52 177995.0 53 164873.0 54 149406.0 55 133939.0 56 125705.5 57 117472.0 58 110940.0 59 104408.0 60 96817.5 61 89227.0 62 77766.5 63 66306.0 64 58924.0 65 51542.0 66 43313.0 67 35084.0 68 29020.0 69 22956.0 70 19055.0 71 15154.0 72 12322.0 73 9490.0 74 7925.5 75 4827.5 76 3294.0 77 2531.5 78 1769.0 79 1372.0 80 975.0 81 650.0 82 325.0 83 298.5 84 272.0 85 198.0 86 124.0 87 90.5 88 57.0 89 41.5 90 26.0 91 18.5 92 11.0 93 6.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2618379.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.395587853647275 #Duplication Level Percentage of deduplicated Percentage of total 1 77.022965487257 15.709286593437923 2 8.104676897686963 3.305992993843998 3 2.869963942888757 1.7560380520196275 4 1.4415014084221538 1.1760107446652128 5 0.8704486583657691 0.8876656041894223 6 0.6370579026651774 0.7795902253000739 7 0.45562764053875765 0.6504955499810777 8 0.3641348631462553 0.5941395673500223 9 0.31440083483438347 0.5771150863312243 >10 4.893883994420991 26.271247293071465 >50 2.7150543806306144 38.89113493222292 >100 0.30551630160510146 7.8741907988186215 >500 0.0038141500305598685 0.525094866238108 >1k 7.628300061119738E-4 0.25671304571640835 >5k 0.0 0.0 >10k+ 1.9070750152799345E-4 0.7452846468139546 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19161 0.7317886371682633 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04346200454556044 0.0 2 0.0 0.0 0.0 0.1433711468049507 0.0 3 0.0 0.0 0.0 0.23231930900759593 0.0 4 0.0 0.0 0.0 0.35239359924594565 0.0 5 0.0 0.0 0.0 0.635584077018644 0.0 6 0.0 0.0 0.0 1.0359844774190443 0.0 7 3.8191568141968754E-5 0.0 0.0 1.257571955778747 0.0 8 3.8191568141968754E-5 0.0 0.0 1.7088817165123917 0.0 9 3.8191568141968754E-5 0.0 0.0 1.9521620055767328 0.0 10 3.8191568141968754E-5 0.0 0.0 2.3595514629471133 0.0 11 3.8191568141968754E-5 0.0 0.0 2.830759030682724 0.0 12 3.8191568141968754E-5 0.0 0.0 3.199956919911136 0.0 13 3.8191568141968754E-5 0.0 0.0 3.357267989087905 0.0 14 3.8191568141968754E-5 0.0 0.0 3.4324671867594416 0.0 15 3.8191568141968754E-5 0.0 0.0 3.5344004821303563 0.0 16 3.8191568141968754E-5 0.0 0.0 3.7410168657784073 0.0 17 3.8191568141968754E-5 0.0 0.0 4.000337613462375 0.0 18 3.8191568141968754E-5 0.0 0.0 4.309078250322051 0.0 19 3.8191568141968754E-5 0.0 0.0 4.473645717445794 0.0 20 3.8191568141968754E-5 0.0 0.0 4.659524079592756 0.0 21 3.8191568141968754E-5 0.0 0.0 4.876757719184274 0.0 22 3.8191568141968754E-5 0.0 0.0 5.1243154638805155 0.0 23 3.8191568141968754E-5 0.0 0.0 5.3853166405627295 0.0 24 3.8191568141968754E-5 0.0 0.0 5.57310458111679 0.0 25 3.8191568141968754E-5 0.0 0.0 5.73217246242809 0.0 26 3.8191568141968754E-5 0.0 0.0 5.89357002939605 0.0 27 3.8191568141968754E-5 0.0 0.0 6.07360508161729 0.0 28 3.8191568141968754E-5 0.0 0.0 6.248560655275649 0.0 29 3.8191568141968754E-5 0.0 0.0 6.44371956848111 0.0 30 3.8191568141968754E-5 0.0 0.0 6.68505208757021 0.0 31 3.8191568141968754E-5 0.0 0.0 6.896747949781143 0.0 32 3.8191568141968754E-5 0.0 0.0 7.096260701754788 0.0 33 3.8191568141968754E-5 0.0 0.0 7.294322174139038 0.0 34 3.8191568141968754E-5 0.0 0.0 7.503841116965878 0.0 35 3.8191568141968754E-5 0.0 0.0 7.741010755127505 0.0 36 3.8191568141968754E-5 0.0 0.0 7.95392874751898 0.0 37 3.8191568141968754E-5 0.0 0.0 8.182352516576096 0.0 38 3.8191568141968754E-5 0.0 0.0 8.419980453555425 0.0 39 3.8191568141968754E-5 0.0 0.0 8.744226867080739 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 10010 0.0 43.02198 1 TATAGCG 205 0.0 41.707317 1 TAACGCG 50 1.0822987E-9 40.5 1 CGGTCTA 460 0.0 40.1087 31 TACGGGA 1005 0.0 39.850746 4 CGTTAGG 475 0.0 39.789474 2 GGGCGAT 3810 0.0 39.271652 7 GACCGAT 1030 0.0 37.79126 9 CGGGATA 585 0.0 37.69231 6 AATGCGG 485 0.0 37.57732 2 ATAGGGA 3565 0.0 37.552593 4 ACGGGAT 1175 0.0 37.340424 5 GGCGATA 785 0.0 37.261147 8 GTAGGGA 3675 0.0 37.10204 4 AGGGCGA 1995 0.0 36.992485 6 TAAGGGA 3735 0.0 36.86747 4 GCGATAT 215 0.0 36.627907 9 TAGGGAT 4395 0.0 36.5529 5 TAGGGAG 3165 0.0 36.540283 5 TAATACG 105 0.0 36.42857 1 >>END_MODULE