SRR1547878_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547878_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1637464
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25990	1.5872104669171352	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2561	0.15640038498556302	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2527	0.15432400345900735	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2271	0.1386900719649409	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1819	0.11108641167072986	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1660	0.10137627453183702	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	20	7.034164E-4	45.000004	1
GGCGTAA	20	7.034164E-4	45.000004	32
TCGATTG	65	0.0	45.000004	1
TACGAGA	20	7.034164E-4	45.000004	35
TTGACGT	20	7.034164E-4	45.000004	17
ACTACGC	20	7.034164E-4	45.000004	23
CGTACGT	20	7.034164E-4	45.000004	22
TTAACGA	20	7.034164E-4	45.000004	32
CATCGTA	20	7.034164E-4	45.000004	21
ATGCGAA	20	7.034164E-4	45.000004	13
ACCGTTG	40	6.8175723E-9	45.000004	11
ACCGTAC	20	7.034164E-4	45.000004	20
CTTTACG	20	7.034164E-4	45.000004	1
ATCGGAT	20	7.034164E-4	45.000004	35
CGTCCGC	20	7.034164E-4	45.000004	28
TTACCGG	40	6.8175723E-9	45.000004	2
GTGCGTA	20	7.034164E-4	45.000004	16
TCGCGAG	40	6.8175723E-9	45.000004	1
AACGTGC	35	1.2123564E-7	45.0	45
AACGTCG	25	3.8915343E-5	45.0	35