##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547878_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1637464 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.426406320993927 31.0 31.0 33.0 30.0 34.0 2 31.8052506803203 31.0 31.0 34.0 30.0 34.0 3 31.77964767469697 31.0 31.0 34.0 30.0 34.0 4 35.60069167932852 37.0 35.0 37.0 33.0 37.0 5 35.50960326456032 37.0 35.0 37.0 33.0 37.0 6 35.58972227786382 37.0 35.0 37.0 33.0 37.0 7 35.98342742191584 37.0 35.0 37.0 35.0 37.0 8 36.012688523228604 37.0 35.0 37.0 35.0 37.0 9 37.794112725531676 39.0 38.0 39.0 35.0 39.0 10 37.240870028287645 39.0 37.0 39.0 34.0 39.0 11 36.95153481236839 39.0 37.0 39.0 33.0 39.0 12 36.4268735068374 38.0 35.0 39.0 32.0 39.0 13 36.251752099588145 39.0 35.0 39.0 32.0 39.0 14 37.342345846992664 39.0 35.0 41.0 32.0 41.0 15 37.510817337052906 40.0 35.0 41.0 33.0 41.0 16 37.60886773693956 40.0 35.0 41.0 33.0 41.0 17 37.54363210427832 39.0 35.0 41.0 33.0 41.0 18 37.447035782160704 39.0 36.0 41.0 33.0 41.0 19 37.34714900602395 39.0 35.0 41.0 32.0 41.0 20 37.16984068046687 39.0 35.0 41.0 32.0 41.0 21 37.041563051157155 39.0 35.0 41.0 32.0 41.0 22 36.93306784149148 39.0 35.0 41.0 32.0 41.0 23 36.827281699017504 38.0 35.0 41.0 32.0 41.0 24 36.824659351289554 38.0 35.0 41.0 32.0 41.0 25 36.762537680217704 38.0 35.0 41.0 32.0 41.0 26 36.6231911052701 38.0 35.0 41.0 31.0 41.0 27 36.522482326329005 38.0 35.0 40.0 31.0 41.0 28 36.447946336530144 38.0 35.0 40.0 31.0 41.0 29 36.39980909503964 38.0 35.0 40.0 31.0 41.0 30 36.314252404938365 38.0 35.0 40.0 31.0 41.0 31 36.18110138604574 38.0 35.0 40.0 30.0 41.0 32 36.004620559597036 38.0 35.0 40.0 30.0 41.0 33 35.89611008242013 38.0 35.0 40.0 30.0 41.0 34 35.74178730036202 38.0 35.0 40.0 30.0 41.0 35 35.66502225392436 38.0 35.0 40.0 29.0 41.0 36 35.54218657631557 38.0 35.0 40.0 29.0 41.0 37 35.44847276031717 38.0 35.0 40.0 28.0 41.0 38 35.33878118847193 38.0 34.0 40.0 27.0 41.0 39 35.276363938382765 37.0 34.0 40.0 27.0 41.0 40 35.11772961115481 37.0 34.0 40.0 26.0 41.0 41 35.058315785873766 37.0 34.0 40.0 26.0 41.0 42 34.97452646287186 37.0 34.0 40.0 26.0 41.0 43 34.88821433631518 37.0 34.0 40.0 26.0 41.0 44 34.66742352808978 36.0 34.0 40.0 24.0 41.0 45 34.5158837079777 36.0 34.0 40.0 24.0 41.0 46 34.46492686251423 36.0 34.0 40.0 24.0 41.0 47 34.3860616172325 36.0 33.0 40.0 24.0 41.0 48 34.29234169422961 36.0 33.0 40.0 23.0 41.0 49 34.14169227537216 36.0 33.0 40.0 24.0 41.0 50 34.04405837319172 35.0 33.0 40.0 23.0 41.0 51 33.713466677740705 35.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 0.0 13 10.0 14 24.0 15 50.0 16 123.0 17 270.0 18 573.0 19 1252.0 20 2173.0 21 3493.0 22 5521.0 23 8188.0 24 12275.0 25 17796.0 26 23414.0 27 26634.0 28 29600.0 29 33932.0 30 40304.0 31 48209.0 32 59474.0 33 77727.0 34 130383.0 35 208887.0 36 140275.0 37 150048.0 38 220127.0 39 396634.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.81983603914346 24.102331410034054 28.94720128198238 14.130631268840107 2 31.543655310895385 26.410046266666015 29.175908600128004 12.870389822310596 3 28.81205327262157 25.277441213974782 32.52859299502157 13.381912518382084 4 25.56025659190065 27.5591402314799 32.21029592100956 14.670307255609893 5 22.595305912068905 31.479104273437464 31.188105509495173 14.73748430499846 6 19.758785536659126 41.123163623749896 28.18010044800985 10.937950391581127 7 87.0784334800643 3.571559435810497 7.533722878793061 1.8162842053321477 8 86.95006424568723 3.0903274820087647 7.354115876745992 2.605492395558009 9 83.24604388249146 4.922734179194169 8.977479810243157 2.8537421280712123 10 43.3024481759599 26.90599610128833 16.083468094565742 13.708087628186025 11 33.18540132790705 27.78992393115207 24.094331234152325 14.930343506788546 12 32.484866842874105 25.441292144437984 26.928775228035544 15.145065784652365 13 21.037409066703148 35.05274009077451 26.732862524000527 17.176988318521815 14 15.210960363098058 38.68970554467152 28.289537968468316 17.80979612376211 15 13.920306034208995 30.847823219319633 38.574893860261966 16.656976886209407 16 15.739521601696282 27.828825549752544 39.236282446514856 17.19537040203632 17 15.851707274175189 28.790006986413136 28.310484993868567 27.04780074554311 18 18.826612371325417 31.743659707938615 31.004590024574586 18.42513789616138 19 23.20392997952932 33.97888442127583 24.466797437989477 18.350388161205373 20 24.913463746378547 31.45705798722903 25.14711773816096 18.48236052823146 21 20.006668848902937 34.1766902967027 27.66082185623623 18.15581899815813 22 20.12795395807175 29.562237704157162 27.254889267794592 23.054919069976503 23 17.545301759305854 34.5142244348578 26.886270476786056 21.054203329050285 24 18.55454532130172 31.539930038156566 32.59925103696936 17.306273603572354 25 17.699808972899554 32.54612009790749 30.140448889258025 19.613622039934924 26 16.227837680706266 38.06288260383129 25.591402314798984 20.117877400663463 27 16.782659038610927 36.98817195370402 28.1076103047151 18.12155870296996 28 15.712895062120449 34.00190782820264 32.82264526120879 17.46255184846812 29 15.80370621888481 31.995024012741652 32.08937723211014 20.111892536263394 30 18.34367045626652 34.679418906308776 28.45155679758456 18.525353839840143 31 23.306466584914233 33.74962747272612 23.977015677901925 18.96689026445772 32 22.792928577361092 34.22456921190328 24.463499655564945 18.51900255517068 33 22.347361529780198 33.96972391454102 23.69291782903319 19.989996726645593 34 17.750985670524667 33.444643668502025 26.90666787178222 21.89770278919109 35 18.164429874488842 31.291313885373967 28.478549757429782 22.065706482707405 36 23.319779854702148 31.97627550895775 25.99452568117528 18.709418955164818 37 17.781154272704622 35.0532897211786 28.066937654812563 19.09861835130421 38 18.527063801097306 36.026501956684235 25.857606640512405 19.58882760170605 39 19.330073821470272 33.417772848746594 26.865445591475602 20.38670773830753 40 21.147213007431002 30.6523380055989 27.72726606508601 20.473182921884085 41 17.235432351489866 28.79318262874787 29.359424085048584 24.61196093471368 42 20.391226921630032 31.34102490192151 25.235180742904884 23.032567433543576 43 19.808862973476057 32.83241646839259 25.54700439215763 21.811716165973724 44 18.783374779537137 34.81749827782473 26.186957392651074 20.212169549987053 45 18.36095327897285 36.89815470752334 23.75099544173185 20.98989657177196 46 21.043516071193018 34.99948701162285 25.22174533302717 18.735251584156963 47 19.21123151409741 32.53109686686242 27.136413380691117 21.121258238349057 48 19.464061499978015 31.014116951578785 29.239543586912447 20.282277961530756 49 19.531055339231884 30.129761631400754 28.20019249278152 22.138990536585844 50 17.083490079781907 32.16730260940088 29.64852967759902 21.100677633218197 51 16.877012257979413 33.87934024809095 26.70422067294304 22.5394268209866 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1039.0 1 1866.0 2 2693.0 3 16806.0 4 30919.0 5 20591.5 6 10264.0 7 10195.0 8 10126.0 9 13115.0 10 16104.0 11 18854.5 12 21605.0 13 21922.5 14 22240.0 15 20255.0 16 18270.0 17 16281.0 18 14292.0 19 12777.0 20 11262.0 21 10857.5 22 10453.0 23 11113.0 24 11773.0 25 12357.5 26 16021.5 27 19101.0 28 22354.5 29 25608.0 30 28821.0 31 32034.0 32 38501.5 33 44969.0 34 49611.5 35 54254.0 36 56717.0 37 59180.0 38 62945.5 39 66711.0 40 83589.5 41 100468.0 42 115883.0 43 131298.0 44 135225.0 45 139152.0 46 143596.0 47 148040.0 48 151231.0 49 154422.0 50 139229.5 51 124037.0 52 106753.0 53 89469.0 54 76927.5 55 64386.0 56 58645.0 57 52904.0 58 48071.0 59 43238.0 60 38078.0 61 32918.0 62 27528.0 63 22138.0 64 17743.5 65 13349.0 66 10439.5 67 7530.0 68 6371.5 69 5213.0 70 4764.5 71 4316.0 72 4304.5 73 4293.0 74 3331.5 75 1548.0 76 726.0 77 662.5 78 599.0 79 434.5 80 270.0 81 221.0 82 172.0 83 146.5 84 121.0 85 106.5 86 92.0 87 75.5 88 59.0 89 44.5 90 30.0 91 18.5 92 7.0 93 6.0 94 5.0 95 4.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1637464.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.614634794808147 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20916742917551 17.76037022061559 2 9.561767543503448 4.515952970653675 3 3.971873414158679 2.813830203796949 4 2.1102831514715614 1.9933426374255085 5 1.3311298701165142 1.5717072873630944 6 0.913876334282669 1.294851352902194 7 0.6656178610439114 1.1002825891017327 8 0.4898815773522975 0.9254699633503249 9 0.3715502493150309 0.7896621100944933 >10 3.380066069875446 18.000693392125147 >50 1.2507343911656512 21.504088944392837 >100 0.7367318488700624 24.40437638926834 >500 0.0049673190612736905 0.7957975659089142 >1k 0.002091502762641554 0.9250143467814788 >5k 0.0 0.0 >10k+ 2.6143784533019424E-4 1.604560026219758 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25990 1.5872104669171352 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 2561 0.15640038498556302 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2527 0.15432400345900735 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2271 0.1386900719649409 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1819 0.11108641167072986 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1660 0.10137627453183702 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2214008979739401E-4 0.0 0.0 0.1020480450257227 0.0 2 1.2214008979739401E-4 0.0 0.0 0.35866437369004756 0.0 3 1.2214008979739401E-4 0.0 0.0 0.5610505024843294 0.0 4 1.2214008979739401E-4 0.0 0.0 0.8358046344835672 0.0 5 1.2214008979739401E-4 0.0 0.0 1.5365833996961153 0.0 6 1.2214008979739401E-4 0.0 0.0 2.338127738991514 0.0 7 1.2214008979739401E-4 0.0 0.0 2.953286301256089 0.0 8 1.2214008979739401E-4 0.0 0.0 4.162045699935999 0.0 9 1.2214008979739401E-4 0.0 0.0 4.731157448346956 0.0 10 1.2214008979739401E-4 0.0 0.0 5.508762330042065 0.0 11 1.2214008979739401E-4 0.0 0.0 6.427927575812354 0.0 12 1.2214008979739401E-4 0.0 0.0 7.004612009790749 0.0 13 1.2214008979739401E-4 0.0 0.0 7.2441287258834395 0.0 14 1.2214008979739401E-4 0.0 0.0 7.345688210549972 0.0 15 1.2214008979739401E-4 0.0 0.0 7.483645441976129 0.0 16 1.2214008979739401E-4 0.0 0.0 7.837973842478369 0.0 17 1.8321013469609103E-4 0.0 0.0 8.24805919397312 0.0 18 1.8321013469609103E-4 0.0 0.0 8.734970661950431 0.0 19 1.8321013469609103E-4 0.0 0.0 8.986579246933063 0.0 20 1.8321013469609103E-4 0.0 0.0 9.237454991376909 0.0 21 1.8321013469609103E-4 0.0 0.0 9.575660900025893 0.0 22 1.8321013469609103E-4 0.0 0.0 9.892919783274625 0.0 23 1.8321013469609103E-4 0.0 0.0 10.2642867263036 0.0 24 1.8321013469609103E-4 0.0 0.0 10.546308193645784 0.0 25 1.8321013469609103E-4 0.0 0.0 10.792298334497735 0.0 26 1.8321013469609103E-4 0.0 0.0 11.008303083304426 0.0 27 1.8321013469609103E-4 0.0 0.0 11.227849894715243 0.0 28 1.8321013469609103E-4 0.0 0.0 11.455152601828193 0.0 29 1.8321013469609103E-4 0.0 0.0 11.70511229559856 0.0 30 1.8321013469609103E-4 0.0 0.0 12.028905673651451 0.0 31 1.8321013469609103E-4 0.0 0.0 12.311537841442622 0.0 32 1.8321013469609103E-4 0.0 0.0 12.558505103012951 0.0 33 1.8321013469609103E-4 0.0 0.0 12.818968844505894 0.0 34 1.8321013469609103E-4 0.0 0.0 13.079188305819242 0.0 35 1.8321013469609103E-4 0.0 0.0 13.397668589965948 0.0 36 1.8321013469609103E-4 0.0 0.0 13.677674745826472 0.0 37 1.8321013469609103E-4 0.0 0.0 13.95994049334825 0.0 38 1.8321013469609103E-4 0.0 0.0 14.242145170825129 0.0 39 1.8321013469609103E-4 0.0 0.0 14.566121759012717 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGACG 20 7.034164E-4 45.000004 1 GGCGTAA 20 7.034164E-4 45.000004 32 TCGATTG 65 0.0 45.000004 1 TACGAGA 20 7.034164E-4 45.000004 35 TTGACGT 20 7.034164E-4 45.000004 17 ACTACGC 20 7.034164E-4 45.000004 23 CGTACGT 20 7.034164E-4 45.000004 22 TTAACGA 20 7.034164E-4 45.000004 32 CATCGTA 20 7.034164E-4 45.000004 21 ATGCGAA 20 7.034164E-4 45.000004 13 ACCGTTG 40 6.8175723E-9 45.000004 11 ACCGTAC 20 7.034164E-4 45.000004 20 CTTTACG 20 7.034164E-4 45.000004 1 ATCGGAT 20 7.034164E-4 45.000004 35 CGTCCGC 20 7.034164E-4 45.000004 28 TTACCGG 40 6.8175723E-9 45.000004 2 GTGCGTA 20 7.034164E-4 45.000004 16 TCGCGAG 40 6.8175723E-9 45.000004 1 AACGTGC 35 1.2123564E-7 45.0 45 AACGTCG 25 3.8915343E-5 45.0 35 >>END_MODULE