##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547874_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1890401 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.44366248219293 31.0 31.0 33.0 30.0 34.0 2 31.853814084948116 31.0 31.0 34.0 30.0 34.0 3 31.919823889217156 33.0 31.0 34.0 30.0 34.0 4 35.69193784810736 37.0 35.0 37.0 33.0 37.0 5 35.59964684741492 37.0 35.0 37.0 33.0 37.0 6 35.641454908244334 37.0 35.0 37.0 33.0 37.0 7 35.99539198297081 37.0 35.0 37.0 35.0 37.0 8 36.02630024000199 37.0 35.0 37.0 35.0 37.0 9 37.81817032470889 39.0 38.0 39.0 35.0 39.0 10 37.2397089294811 39.0 37.0 39.0 34.0 39.0 11 37.013477034766694 39.0 37.0 39.0 33.0 39.0 12 36.37062718439104 38.0 35.0 39.0 32.0 39.0 13 36.1394995030155 38.0 35.0 39.0 32.0 39.0 14 37.21058336300076 39.0 35.0 41.0 32.0 41.0 15 37.41575729170689 39.0 35.0 41.0 33.0 41.0 16 37.51550120847376 39.0 35.0 41.0 33.0 41.0 17 37.43703372988059 39.0 35.0 41.0 33.0 41.0 18 37.36586099986194 39.0 35.0 41.0 32.0 41.0 19 37.289125428943386 39.0 35.0 41.0 32.0 41.0 20 37.13943814037339 39.0 35.0 41.0 32.0 41.0 21 37.031156352541075 39.0 35.0 41.0 32.0 41.0 22 36.9166007635417 38.0 35.0 41.0 32.0 41.0 23 36.841932478876174 38.0 35.0 41.0 32.0 41.0 24 36.85755244522194 38.0 35.0 41.0 32.0 41.0 25 36.81785822161542 38.0 35.0 41.0 32.0 41.0 26 36.70924687407592 38.0 35.0 41.0 31.0 41.0 27 36.62509382929865 38.0 35.0 41.0 31.0 41.0 28 36.59859786362787 38.0 35.0 41.0 31.0 41.0 29 36.62019698466093 38.0 35.0 41.0 31.0 41.0 30 36.54488439225329 38.0 35.0 40.0 31.0 41.0 31 36.408319716293 38.0 35.0 40.0 31.0 41.0 32 36.254282027993 38.0 35.0 40.0 30.0 41.0 33 36.16561512610287 38.0 35.0 40.0 30.0 41.0 34 36.05682074861365 38.0 35.0 40.0 30.0 41.0 35 35.968452196121355 38.0 35.0 40.0 30.0 41.0 36 35.843802981483826 38.0 35.0 40.0 30.0 41.0 37 35.7564976954625 38.0 35.0 40.0 29.0 41.0 38 35.64532075469702 38.0 35.0 40.0 29.0 41.0 39 35.56381370936643 38.0 35.0 40.0 29.0 41.0 40 35.38563246633915 38.0 34.0 40.0 27.0 41.0 41 35.3349569747371 38.0 34.0 40.0 27.0 41.0 42 35.214266708492005 38.0 34.0 40.0 27.0 41.0 43 35.116220315160646 37.0 34.0 40.0 27.0 41.0 44 34.95803853256531 37.0 34.0 40.0 26.0 41.0 45 34.800244498389496 37.0 34.0 40.0 25.0 41.0 46 34.71446269865494 37.0 34.0 40.0 24.0 41.0 47 34.63304082043968 37.0 34.0 40.0 24.0 41.0 48 34.55840850697815 37.0 34.0 40.0 24.0 41.0 49 34.43986328826529 36.0 34.0 40.0 24.0 41.0 50 34.34805895680334 36.0 34.0 40.0 24.0 41.0 51 33.99641187240167 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 1.0 12 1.0 13 2.0 14 11.0 15 50.0 16 96.0 17 268.0 18 630.0 19 1197.0 20 2169.0 21 3584.0 22 5688.0 23 8692.0 24 12923.0 25 18995.0 26 24812.0 27 29566.0 28 33323.0 29 38027.0 30 45618.0 31 54773.0 32 67810.0 33 88310.0 34 154607.0 35 248242.0 36 129179.0 37 162739.0 38 260557.0 39 498467.0 40 60.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.870539636828376 24.73284768681354 30.43534149632803 12.961271180030057 2 29.458564611423714 26.768447541024365 30.76617077540691 13.00681707214501 3 28.762521814154773 25.5468019748191 32.11350396027086 13.577172250755263 4 24.911010944238814 28.156618622186507 31.810975554921946 15.12139487865273 5 22.76104382086129 32.420793260265945 30.50405707572097 14.314105843151797 6 20.017498932766117 40.40470778422144 28.06441596253916 11.513377320473275 7 88.4008736770664 3.645311232907727 6.2004833895030735 1.753331700522799 8 89.49043086625537 2.428162067201615 5.4247749551550175 2.6566321113880074 9 85.83348189087924 3.979473138238924 7.556068791753708 2.630976179128132 10 42.956124123929264 28.33747971991128 14.65979969329259 14.046596462866873 11 35.7356455059006 26.206344579800795 23.946347891267514 14.111662023031094 12 33.536852762985205 23.199416420114037 26.539501407373358 16.724229409527396 13 20.468091161610687 34.89069250386558 27.476657069055722 17.164559265468014 14 14.934291719058548 37.83059784670025 29.472477003556392 17.76263343068481 15 13.929742948718287 28.037702053691255 42.37185655318633 15.660698444404122 16 16.437411956510815 23.85530900586701 40.871857346668776 18.835421690953403 17 17.008349022244488 24.87070203623464 28.427249033406138 29.693699908114734 18 20.167149721143822 26.312195137433804 33.15026811771683 20.370387023705554 19 24.11752850321175 28.450101327707717 26.83139714801251 20.600973021068018 20 25.916088702873097 26.873504616216348 27.06970637446764 20.14070030644292 21 21.3129912648163 29.934548278381147 28.99908537923964 19.75337507756291 22 21.44957604233176 25.098325699150603 28.47443478923255 24.977663469285087 23 18.999831252734207 30.109326010724708 27.355518749725587 23.535323986815495 24 18.974598511109548 26.469727851392378 35.881699173878985 18.673974463619096 25 17.48983416745971 28.165399827867212 32.21649798111618 22.128268023556906 26 17.03458684162778 34.250457971615546 27.54452626717823 21.170428919578438 27 17.48581385642517 33.143602865212195 29.474804552050067 19.895778726312567 28 15.819394932609537 29.372551114816382 36.10926993796554 18.698784014608542 29 15.920696190913992 25.643130743159787 35.28732792672031 23.148845139205914 30 18.148001402876957 29.64492718740627 31.732050501454452 20.47502090826232 31 24.393237202053957 27.792568878243294 26.563676172409984 21.250517747292772 32 24.1922216503271 28.629798651185652 26.622182277728374 20.555797420758875 33 23.004854525574203 28.958564875917858 26.72745094823797 21.30912965026997 34 17.79035241729136 28.438728079386333 29.28595573108563 24.484963772236686 35 18.721424713592512 27.43878150720403 30.225650536579273 23.614143242624184 36 23.998559035887094 26.467611898216305 29.177671827300134 20.356157238596467 37 19.072143952526474 29.50865980286722 30.42994581572904 20.98925042887726 38 18.703650706913507 31.29246122912546 27.483533916877956 22.52035414708308 39 19.16318283792698 29.810817916410326 28.308067970763872 22.717931274898817 40 21.76331899951386 27.133872654532027 27.97073213566857 23.132076210285543 41 18.025329017494172 24.51527480148392 30.03246401160389 27.426932169418023 42 21.02881875326981 25.74739433591074 27.2738429571292 25.949943953690248 43 20.008453232938407 27.27849805411656 28.468563019168947 24.24448569377608 44 19.28305158535147 29.986071738218506 27.877259904115583 22.853616772314446 45 18.541674491285182 32.68184898336385 25.029874613904667 23.7466019114463 46 21.84123897522272 30.339912008087172 27.00278935527436 20.816059661415753 47 20.618588331258817 27.31235330493372 28.414553314349707 23.65450504945776 48 20.463224469305718 25.105467041119844 31.28632496491485 23.144983524659583 49 19.95756455905387 24.212852193793804 31.352184007520094 24.477399239632224 50 18.642552558954424 28.969514933604035 29.616520516017502 22.771411991424042 51 17.627318225074998 29.55547526688782 27.241415974705895 25.57579053333129 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1024.0 1 1557.5 2 2091.0 3 7860.0 4 13629.0 5 10162.0 6 6695.0 7 6589.5 8 6484.0 9 7077.0 10 7670.0 11 8080.5 12 8491.0 13 8573.5 14 8656.0 15 8526.5 16 8397.0 17 8543.5 18 8690.0 19 8213.5 20 7737.0 21 8074.5 22 8412.0 23 9085.0 24 9758.0 25 11996.0 26 17480.0 27 20726.0 28 24781.5 29 28837.0 30 33553.0 31 38269.0 32 43141.0 33 48013.0 34 54744.5 35 61476.0 36 64274.5 37 67073.0 38 75920.0 39 84767.0 40 104235.0 41 123703.0 42 146089.0 43 168475.0 44 175932.5 45 183390.0 46 186550.5 47 189711.0 48 183872.0 49 178033.0 50 167267.0 51 156501.0 52 138452.0 53 120403.0 54 102699.0 55 84995.0 56 75016.0 57 65037.0 58 57946.5 59 50856.0 60 44249.0 61 37642.0 62 32702.5 63 27763.0 64 22717.0 65 17671.0 66 14185.0 67 10699.0 68 8381.5 69 6064.0 70 4952.0 71 3840.0 72 2960.0 73 2080.0 74 1681.5 75 890.5 76 498.0 77 406.0 78 314.0 79 262.0 80 210.0 81 130.0 82 50.0 83 39.0 84 28.0 85 20.0 86 12.0 87 7.5 88 3.0 89 5.0 90 7.0 91 5.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1890401.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.1267473386222 #Duplication Level Percentage of deduplicated Percentage of total 1 76.41913642827892 16.144877871559483 2 9.590978801258393 4.052523717285354 3 3.46638622701771 2.1970039798884917 4 1.7477695026219355 1.476987387521721 5 1.0146824520688165 1.071846989689576 6 0.6668710387440163 0.8453289565793619 7 0.441997566749562 0.6536579641902658 8 0.3418443762111815 0.5777647812274036 9 0.2668782425780543 0.507444228100987 >10 3.181673021497654 16.836897638568225 >50 2.034184209342672 31.506364050235717 >100 0.8217484848849779 22.455866919164748 >500 0.003560655758480712 0.5259844678272957 >1k 0.00203466043341755 0.6769719389269688 >5k 2.5433255417719374E-4 0.4704791092344265 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8756 0.46318215024219733 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3829 0.20254961777950814 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.289882940180417E-5 0.0 0.0 0.10712012953865344 0.0 2 5.289882940180417E-5 0.0 0.0 0.3819824471104279 0.0 3 2.6449414700902083E-4 0.0 0.0 0.5732646142273518 0.0 4 2.6449414700902083E-4 0.0 0.0 1.0103676415744596 0.0 5 2.6449414700902083E-4 0.0 0.0 1.6803842147777113 0.0 6 2.6449414700902083E-4 0.0 0.0 2.5495648806787554 0.0 7 2.6449414700902083E-4 0.0 0.0 2.9666192516825793 0.0 8 2.6449414700902083E-4 0.0 0.0 4.013381287885481 0.0 9 2.6449414700902083E-4 0.0 0.0 4.412873247527905 0.0 10 2.6449414700902083E-4 0.0 0.0 5.165835185233186 0.0 11 2.6449414700902083E-4 0.0 0.0 5.996188110353306 0.0 12 2.6449414700902083E-4 0.0 0.0 6.6312914561513665 0.0 13 2.6449414700902083E-4 0.0 0.0 6.889279047143965 0.0 14 2.6449414700902083E-4 0.0 0.0 6.9856607143140526 0.0 15 2.6449414700902083E-4 0.0 0.0 7.136369479279793 0.0 16 2.6449414700902083E-4 0.0 0.0 7.490580040954273 0.0 17 2.6449414700902083E-4 0.0 0.0 7.896684354271924 0.0 18 2.6449414700902083E-4 0.0 0.0 8.433607472700237 0.0 19 2.6449414700902083E-4 0.0 0.0 8.704661074555082 0.0 20 2.6449414700902083E-4 0.0 0.0 8.995445939776799 0.0 21 2.6449414700902083E-4 0.0 0.0 9.388748736379213 0.0 22 2.6449414700902083E-4 0.0 0.0 9.769408712754595 0.0 23 2.6449414700902083E-4 0.0 0.0 10.184611624729357 0.0 24 2.6449414700902083E-4 0.0 0.0 10.482749427237925 0.0 25 2.6449414700902083E-4 0.0 0.0 10.74507472224147 0.0 26 2.6449414700902083E-4 0.0 0.0 10.993857916918156 0.0 27 2.6449414700902083E-4 0.0 0.0 11.23058017849123 0.0 28 2.6449414700902083E-4 0.0 0.0 11.474337984374744 0.0 29 2.6449414700902083E-4 0.0 0.0 11.74338143071232 0.0 30 2.6449414700902083E-4 0.0 0.0 12.09817387951022 0.0 31 2.6449414700902083E-4 0.0 0.0 12.412816116792152 0.0 32 2.6449414700902083E-4 0.0 0.0 12.683658123329389 0.0 33 2.6449414700902083E-4 0.0 0.0 12.94730588906798 0.0 34 2.6449414700902083E-4 0.0 0.0 13.228992155632588 0.0 35 2.6449414700902083E-4 0.0 0.0 13.567967854439349 0.0 36 2.6449414700902083E-4 0.0 0.0 13.85711285594961 0.0 37 2.6449414700902083E-4 0.0 0.0 14.149167293076971 0.0 38 3.17392976410825E-4 0.0 0.0 14.44852176866178 0.0 39 3.17392976410825E-4 0.0 0.0 14.745284201605903 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGC 25 3.8917642E-5 45.0 12 ACCGGAT 20 7.0344436E-4 45.0 12 GTCGAAT 20 7.0344436E-4 45.0 40 TCCGATT 35 1.2124838E-7 45.0 27 CGCGATT 20 7.0344436E-4 45.0 38 CCCGTTA 45 3.8562575E-10 45.0 30 CCCGGTA 20 7.0344436E-4 45.0 23 TCGCGAC 25 3.8917642E-5 45.0 10 CCGAACG 30 2.1662472E-6 44.999996 1 CGCATCG 105 0.0 42.857147 21 CGTTTTT 4865 0.0 42.68756 1 TACGGGT 185 0.0 42.567566 4 TACGGGA 770 0.0 40.909092 4 TACGATG 110 0.0 40.909092 1 TTACGGG 615 0.0 40.609756 3 GCGATGA 150 0.0 40.5 9 AGGGCGA 1510 0.0 40.380795 6 CGACGGT 280 0.0 40.17857 28 AACGGGA 450 0.0 40.0 4 ACGGGAT 715 0.0 39.965034 5 >>END_MODULE