SRR1547871_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547871_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1871538
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7840	0.4189068028541232	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3536	0.18893551720563515	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATA	25	3.8917482E-5	45.000004	9
GACCGAC	25	3.8917482E-5	45.000004	9
GCGGATA	25	3.8917482E-5	45.000004	30
ACGTACG	45	3.8562575E-10	45.000004	1
AACCGGT	20	7.0344255E-4	45.0	37
ATCCGAC	20	7.0344255E-4	45.0	32
CCGTATT	20	7.0344255E-4	45.0	19
CGACTCC	20	7.0344255E-4	45.0	28
TAATGCG	75	0.0	45.0	1
GCGTAAG	140	0.0	45.0	1
AGTCGAC	20	7.0344255E-4	45.0	38
CGACGGT	305	0.0	42.786884	28
TATAGCG	85	0.0	42.352943	1
ATAACGG	125	0.0	41.4	2
CGGTCTA	310	0.0	41.370968	31
ACGCTAG	60	3.6379788E-12	41.250004	1
CGTTTTT	3775	0.0	41.125824	1
TACACGG	215	0.0	40.813953	2
CGCATCG	160	0.0	40.78125	21
TAAGGGA	2015	0.0	39.528534	4