SRR1547866_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547866_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1053993
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39555	3.752871224002437	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3629	0.3443096870662329	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1574	0.14933685517835507	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT	1267	0.12020952700824389	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1141	0.10825498841073897	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1112	0.10550354698750371	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1081	0.10256235098335567	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT	1063	0.10085455975514068	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACG	20	7.0330186E-4	45.000004	1
TAGCACG	30	2.1653286E-6	45.000004	1
GCGATCG	30	2.1653286E-6	45.000004	9
TTACGAG	40	6.8139343E-9	45.000004	1
GTCGCAA	25	3.8905848E-5	45.0	22
CTCCGAT	25	3.8905848E-5	45.0	16
TACGGGT	45	3.8562575E-10	45.0	4
TCGATAG	25	3.8905848E-5	45.0	1
AGGCCCG	25	3.8905848E-5	45.0	38
TATAGCG	45	3.8562575E-10	45.0	1
TAAGCGC	25	3.8905848E-5	45.0	18
CGTTTTT	9945	0.0	44.117645	1
TCACGAC	225	0.0	44.0	25
TCGGTAG	165	0.0	43.636364	28
CGGTCTA	225	0.0	43.0	31
ATCGGTA	170	0.0	42.35294	27
TCTAGCG	80	0.0	42.187504	1
CTCACGA	235	0.0	42.12766	24
CGACGGT	230	0.0	42.06522	28
CGCCAGT	70	0.0	41.785713	26