##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547866_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1053993 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.49625566773214 31.0 31.0 33.0 30.0 34.0 2 31.844249439986793 31.0 31.0 34.0 30.0 34.0 3 31.52909174918619 31.0 31.0 34.0 30.0 34.0 4 35.529154368197894 37.0 35.0 37.0 33.0 37.0 5 35.55951889623555 37.0 35.0 37.0 33.0 37.0 6 35.68017434650894 37.0 35.0 37.0 33.0 37.0 7 36.02998881396746 37.0 35.0 37.0 35.0 37.0 8 36.07575287501909 37.0 35.0 37.0 35.0 37.0 9 37.84779215801243 39.0 38.0 39.0 35.0 39.0 10 37.45893948062274 39.0 37.0 39.0 35.0 39.0 11 37.164507733922335 39.0 37.0 39.0 34.0 39.0 12 36.65704231432277 39.0 35.0 39.0 33.0 39.0 13 36.50091224514774 39.0 35.0 39.0 33.0 39.0 14 37.570743828469446 40.0 35.0 41.0 33.0 41.0 15 37.76561988552106 40.0 35.0 41.0 33.0 41.0 16 37.86403325259276 40.0 35.0 41.0 33.0 41.0 17 37.80285258061486 40.0 35.0 41.0 33.0 41.0 18 37.61877830308171 39.0 36.0 41.0 33.0 41.0 19 37.408016941288984 39.0 36.0 41.0 33.0 41.0 20 37.121066268941064 38.0 35.0 41.0 33.0 41.0 21 37.005714459204185 38.0 35.0 41.0 32.0 41.0 22 36.927537469413934 38.0 35.0 41.0 32.0 41.0 23 36.83532053818194 38.0 35.0 41.0 32.0 41.0 24 36.78417503721562 38.0 35.0 41.0 32.0 41.0 25 36.69562321571396 38.0 35.0 41.0 32.0 41.0 26 36.55441734432771 38.0 35.0 40.0 32.0 41.0 27 36.446625357094405 38.0 35.0 40.0 32.0 41.0 28 36.339663546152586 37.0 35.0 40.0 31.0 41.0 29 36.2639543146871 37.0 35.0 40.0 31.0 41.0 30 36.119962846053056 37.0 35.0 40.0 31.0 41.0 31 35.88819090828876 37.0 35.0 40.0 31.0 41.0 32 35.60029715567371 37.0 35.0 40.0 30.0 41.0 33 35.34410854721047 37.0 34.0 40.0 29.0 41.0 34 35.040303872985874 37.0 34.0 40.0 26.0 41.0 35 34.794854425029385 36.0 34.0 40.0 25.0 41.0 36 34.568156524758706 36.0 34.0 40.0 23.0 41.0 37 34.42734249658204 36.0 34.0 40.0 23.0 41.0 38 34.26214974862262 36.0 33.0 40.0 23.0 41.0 39 34.1423823497879 36.0 33.0 40.0 22.0 41.0 40 33.97493436863433 36.0 33.0 40.0 21.0 41.0 41 33.86738526726458 35.0 33.0 40.0 21.0 41.0 42 33.783889456571345 35.0 33.0 40.0 21.0 41.0 43 33.72298203118996 35.0 33.0 40.0 21.0 41.0 44 33.447502972031124 35.0 33.0 40.0 18.0 41.0 45 33.34627174943287 35.0 33.0 40.0 20.0 41.0 46 33.32894430987682 35.0 33.0 40.0 20.0 41.0 47 33.24957091745391 35.0 33.0 40.0 20.0 41.0 48 33.11725694572924 35.0 33.0 40.0 19.0 41.0 49 32.9756782065915 35.0 33.0 39.0 18.0 41.0 50 32.88927630449159 35.0 32.0 39.0 18.0 41.0 51 32.6135790275647 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 6.0 13 8.0 14 15.0 15 46.0 16 73.0 17 200.0 18 453.0 19 887.0 20 1534.0 21 2637.0 22 4016.0 23 6191.0 24 10031.0 25 15834.0 26 21456.0 27 23920.0 28 23624.0 29 24296.0 30 26624.0 31 31080.0 32 38125.0 33 49564.0 34 84881.0 35 135655.0 36 98780.0 37 98393.0 38 132969.0 39 222654.0 40 35.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.81784509005278 23.49550708591044 27.027693732311313 19.658954091725466 2 37.572071161762935 24.58403423931658 26.325981292095868 11.51791330682462 3 27.11203964352704 24.255569059756564 36.51997688789205 12.112414408824348 4 24.793333542063372 25.444191754594197 35.90090256766411 13.86157213567832 5 21.750239327965176 29.466988869945055 35.13116311019143 13.651608691898334 6 19.520338370368684 37.98089740633951 32.15135204882765 10.347412174464157 7 80.76135230499634 3.301065566849116 13.895443328371252 2.0421387997833005 8 81.47416538819517 2.6014404270237086 13.622671118309135 2.3017230664719786 9 76.73665764383635 5.035137804520523 15.092984488511782 3.135220063131349 10 42.2668841254164 28.590417583418485 19.411039731762926 9.731658559402197 11 32.14025140584425 21.4869548469487 30.678002605330395 15.694791141876655 12 29.944601150102514 21.59226863935529 32.8241269154539 15.639003295088298 13 20.966742663376323 29.80427763751752 33.30135968644953 15.927620012656629 14 15.558737107362195 33.86720784673143 34.3300192695777 16.244035776328687 15 14.576662273848118 27.915745170983108 42.378080309831276 15.129512245337493 16 17.814729319834193 25.152728718312172 41.174846512263365 15.857695449590272 17 17.429053134128974 26.745813302365384 31.863494349582965 23.961639213922673 18 19.58608833265496 29.68947611606529 33.71967366007175 17.004761891208005 19 22.12130441094011 31.209505186467084 29.23159831232276 17.437592090270048 20 22.923966288201157 30.188720418446803 29.318126401218986 17.56918689213306 21 20.365505273754188 30.478191031629244 32.0794350626617 17.076868631954863 22 20.103643952094558 27.5019853073028 31.789774694898355 20.604596045704287 23 17.330950015797068 31.780002333981344 31.22354702545463 19.665500624766956 24 18.251164855933578 30.45598974566245 34.97006147099649 16.32278392740749 25 18.49414559679239 30.443371066031748 32.781147502877154 18.28133583429871 26 16.242897248843207 34.2514608730798 29.513668496849597 19.99197338122739 27 16.737682318573274 33.486560157420406 32.57403037781086 17.201727146195466 28 15.554942015743938 31.237019600699433 36.052136968651595 17.155901414905035 29 16.24365626716686 30.86045163487803 34.27413654549888 18.621755552456232 30 17.96767151204989 32.542436240088875 32.84737185161571 16.642520396245516 31 23.471123622263146 31.30760830479899 28.2111930534643 17.010075019473565 32 23.515336439615822 32.220043207118074 27.74354288880476 16.52107746446134 33 21.443690802500587 31.97962415310159 27.80151291327362 18.77517213112421 34 18.435131922128516 31.73227905688178 30.582366296550354 19.250222724439347 35 19.156009575016153 31.30969560518903 30.178094161915688 19.356200657879132 36 24.31818807145778 31.18730390050029 28.511764309630138 15.982743718411793 37 19.518440824559555 33.05382483564882 30.268986606172906 17.158747733618725 38 18.890258284447807 33.858574013299894 28.781974832849933 18.46919286940236 39 18.704109040572376 32.33968347038358 29.788148498139932 19.168058990904115 40 20.92082205479543 30.454566586305603 29.556363277554976 19.068248081343995 41 17.174497363834483 29.584826464691893 31.264249383060417 21.976426788413207 42 18.745475539211363 32.130763676798615 28.669829875530482 20.453930908459544 43 19.356105780588674 31.495275585321725 28.936529939003393 20.212088695086212 44 19.19699656449331 33.11672847922139 29.16338154048461 18.522893415800674 45 18.37640287933601 35.38979860397555 25.717058841946766 20.516739674741675 46 20.637044079040372 33.252213249993126 27.438322645406565 18.67242002555994 47 19.531059504190257 31.672221732022887 29.300763857065466 19.49595490672139 48 19.627549708584404 30.850204887508742 30.248872620596153 19.273372783310705 49 19.273657415182075 29.79839524550922 30.03900405410662 20.88894328520208 50 17.683229395261638 31.839869904259327 30.955423802624875 19.52147689785416 51 16.721553179195688 32.80202050677756 29.663005352027955 20.813420961998798 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 567.0 1 1237.0 2 1907.0 3 24684.0 4 47461.0 5 30411.0 6 13361.0 7 12146.0 8 10931.0 9 13433.5 10 15936.0 11 18138.0 12 20340.0 13 20945.0 14 21550.0 15 20208.5 16 18867.0 17 16691.5 18 14516.0 19 13056.5 20 11597.0 21 10569.5 22 9542.0 23 9110.5 24 8679.0 25 8906.5 26 9907.5 27 10681.0 28 12050.0 29 13419.0 30 15396.5 31 17374.0 32 19463.0 33 21552.0 34 23583.0 35 25614.0 36 27733.0 37 29852.0 38 33212.0 39 36572.0 40 42513.5 41 48455.0 42 57269.0 43 66083.0 44 70030.0 45 73977.0 46 78514.0 47 83051.0 48 84037.5 49 85024.0 50 78333.5 51 71643.0 52 64049.5 53 56456.0 54 50822.5 55 45189.0 56 41757.5 57 38326.0 58 37042.0 59 35758.0 60 31857.5 61 27957.0 62 24783.5 63 21610.0 64 18690.0 65 15770.0 66 12799.5 67 9829.0 68 7692.0 69 5555.0 70 4733.5 71 3912.0 72 3303.5 73 2695.0 74 2108.5 75 1174.0 76 826.0 77 643.5 78 461.0 79 348.5 80 236.0 81 159.0 82 82.0 83 73.5 84 65.0 85 43.0 86 21.0 87 16.5 88 12.0 89 10.5 90 9.0 91 10.0 92 11.0 93 7.0 94 3.0 95 3.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1053993.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.23710992036838 #Duplication Level Percentage of deduplicated Percentage of total 1 74.92194757313652 23.403451117901426 2 8.912884950444148 5.568255338092418 3 3.6307957209879755 3.402466951047136 4 1.98885744636381 2.4850463467203796 5 1.2601673701482135 1.9681993329690641 6 0.9343559300514057 1.7511947335058273 7 0.709529119118288 1.5514547359920074 8 0.6215306384102357 1.5531856696717812 9 0.5036405183625757 1.4159046809198776 >10 6.020910524090387 40.93629673025797 >50 0.4585262447057671 8.720259265409643 >100 0.03132586955367518 1.7944506608096185 >500 0.0030711636816934144 0.6126362961692837 >1k 0.00214981457718539 1.0425177936848742 >5k 0.0 0.0 >10k+ 3.0711636816934144E-4 3.7946803468487342 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39555 3.752871224002437 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3629 0.3443096870662329 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1574 0.14933685517835507 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT 1267 0.12020952700824389 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1141 0.10825498841073897 No Hit GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1112 0.10550354698750371 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1081 0.10256235098335567 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT 1063 0.10085455975514068 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04962082290869104 0.0 2 0.0 0.0 0.0 0.18472608451858788 0.0 3 0.0 0.0 0.0 0.34079922731934653 0.0 4 0.0 0.0 0.0 0.5121476138835837 0.0 5 0.0 0.0 0.0 1.0154716397547232 0.0 6 0.0 0.0 0.0 1.9559902200488997 0.0 7 0.0 0.0 0.0 2.702864250521588 0.0 8 0.0 0.0 0.0 3.7044838058696783 0.0 9 0.0 0.0 0.0 4.485039274454384 0.0 10 0.0 0.0 0.0 5.232103059507986 0.0 11 0.0 0.0 0.0 5.873853052154995 0.0 12 0.0 0.0 0.0 6.304880582698367 0.0 13 0.0 0.0 0.0 6.528790988175444 0.0 14 0.0 0.0 0.0 6.666078427465837 0.0 15 0.0 0.0 0.0 6.777654121042549 0.0 16 9.487729045638824E-5 0.0 0.0 6.960292905171097 0.0 17 9.487729045638824E-5 0.0 0.0 7.171964140179299 0.0 18 9.487729045638824E-5 0.0 0.0 7.438189817199924 0.0 19 9.487729045638824E-5 0.0 0.0 7.580221121013138 0.0 20 9.487729045638824E-5 0.0 0.0 7.738476441494393 0.0 21 9.487729045638824E-5 0.0 0.0 7.905650227278549 0.0 22 9.487729045638824E-5 0.0 0.0 8.085537569983861 0.0 23 9.487729045638824E-5 0.0 0.0 8.272256077602034 0.0 24 9.487729045638824E-5 0.0 0.0 8.430416520792832 0.0 25 9.487729045638824E-5 0.0 0.0 8.560113776846716 0.0 26 9.487729045638824E-5 0.0 0.0 8.69000078748151 0.0 27 9.487729045638824E-5 0.0 0.0 8.83108331839016 0.0 28 9.487729045638824E-5 0.0 0.0 8.958029133020808 0.0 29 9.487729045638824E-5 0.0 0.0 9.104614546775927 0.0 30 9.487729045638824E-5 0.0 0.0 9.300441274277913 0.0 31 9.487729045638824E-5 0.0 0.0 9.456134907916846 0.0 32 9.487729045638824E-5 0.0 0.0 9.604807622062006 0.0 33 9.487729045638824E-5 0.0 0.0 9.761829537767328 0.0 34 9.487729045638824E-5 0.0 0.0 9.92017973553904 0.0 35 9.487729045638824E-5 0.0 0.0 10.116196217621939 0.0 36 9.487729045638824E-5 0.0 0.0 10.280998071144685 0.0 37 9.487729045638824E-5 0.0 0.0 10.448551366090667 0.0 38 9.487729045638824E-5 0.0 0.0 10.654814595542854 0.0 39 9.487729045638824E-5 0.0 0.0 10.997036982219047 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTACG 20 7.0330186E-4 45.000004 1 TAGCACG 30 2.1653286E-6 45.000004 1 GCGATCG 30 2.1653286E-6 45.000004 9 TTACGAG 40 6.8139343E-9 45.000004 1 GTCGCAA 25 3.8905848E-5 45.0 22 CTCCGAT 25 3.8905848E-5 45.0 16 TACGGGT 45 3.8562575E-10 45.0 4 TCGATAG 25 3.8905848E-5 45.0 1 AGGCCCG 25 3.8905848E-5 45.0 38 TATAGCG 45 3.8562575E-10 45.0 1 TAAGCGC 25 3.8905848E-5 45.0 18 CGTTTTT 9945 0.0 44.117645 1 TCACGAC 225 0.0 44.0 25 TCGGTAG 165 0.0 43.636364 28 CGGTCTA 225 0.0 43.0 31 ATCGGTA 170 0.0 42.35294 27 TCTAGCG 80 0.0 42.187504 1 CTCACGA 235 0.0 42.12766 24 CGACGGT 230 0.0 42.06522 28 CGCCAGT 70 0.0 41.785713 26 >>END_MODULE