SRR1547863_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547863_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1687604
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10160	0.6020369707585429	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4518	0.2677168340440056	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	2751	0.16301217584219996	No Hit
CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	2131	0.12627369928016288	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	2088	0.12372570816376353	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAT	60	0.0	45.000004	29
AATCCGG	25	3.8915845E-5	45.000004	44
CTCCGAT	35	1.2123746E-7	45.000004	45
TACGCTT	30	2.1661072E-6	45.000004	28
GTTCGCC	25	3.8915845E-5	45.000004	27
TACGACG	30	2.1661072E-6	45.000004	1
TTGACGA	25	3.8915845E-5	45.000004	32
GGACGTA	25	3.8915845E-5	45.000004	9
CGCAATC	25	3.8915845E-5	45.000004	18
TAGGACG	60	0.0	45.000004	1
CGCCCTA	25	3.8915845E-5	45.000004	17
CTTACGT	30	2.1661072E-6	45.000004	29
AAGTACG	45	3.8562575E-10	45.0	1
GTTTACG	40	6.8175723E-9	45.0	1
TTTCGCG	75	0.0	45.0	1
CACGCTA	20	7.034227E-4	45.0	19
CATTACG	20	7.034227E-4	45.0	30
TACGATA	20	7.034227E-4	45.0	37
CGGATAG	20	7.034227E-4	45.0	14
CACTACG	40	6.8175723E-9	45.0	1